GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

HUMAN:SRBP2

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Homo sapiens (Human). (9606)
Gene Name(s) SREBF2 (synonyms: BHLHD2, SREBP2)
Protein Name(s) Sterol regulatory element-binding protein 2

SREBP-2 Class D basic helix-loop-helix protein 2 bHLHd2 Sterol regulatory element-binding transcription factor 2 Processed sterol regulatory element-binding protein 2

External Links
UniProt Q12772
EMBL U02031
CT841522
AL021453
Z99716
Z99716
AL021453
BC051385
BC051799
BC056158
CCDS CCDS14023.1
PIR A49397
RefSeq NP_004590.2
UniGene Hs.443258
PDB 1UKL
PDBsum 1UKL
ProteinModelPortal Q12772
SMR Q12772
BioGrid 112599
DIP DIP-263N
IntAct Q12772
MINT MINT-144301
STRING 9606.ENSP00000354476
BindingDB Q12772
ChEMBL CHEMBL1795166
iPTMnet Q12772
PhosphoSite Q12772
BioMuta SREBF2
DMDM 116242800
EPD Q12772
MaxQB Q12772
PaxDb Q12772
PRIDE Q12772
DNASU 6721
Ensembl ENST00000361204
GeneID 6721
KEGG hsa:6721
UCSC uc003bbi.5
CTD 6721
GeneCards SREBF2
HGNC HGNC:11290
HPA HPA031962
MIM 600481
neXtProt NX_Q12772
PharmGKB PA336
eggNOG KOG2588
ENOG410XSVP
GeneTree ENSGT00390000017651
HOGENOM HOG000186198
HOVERGEN HBG061592
InParanoid Q12772
KO K09107
OMA QEEESCE
OrthoDB EOG7D85VS
PhylomeDB Q12772
TreeFam TF313894
Reactome [www.reactome.org/content/detail/R-HSA-1655829 R-HSA-1655829]
[www.reactome.org/content/detail/R-HSA-1989781 R-HSA-1989781]
[www.reactome.org/content/detail/R-HSA-2426168 R-HSA-2426168]
[www.reactome.org/content/detail/R-HSA-381340 R-HSA-381340]
SIGNOR Q12772
EvolutionaryTrace Q12772
GeneWiki SREBF2
GenomeRNAi 6721
PMAP-CutDB Q12772
PRO PR:Q12772
Proteomes UP000005640
Bgee Q12772
CleanEx HS_SREBF2
ExpressionAtlas Q12772
Genevisible Q12772
GO GO:0005737
GO:0005829
GO:0005783
GO:0005789
GO:0012507
GO:0000139
GO:0005654
GO:0005634
GO:0032937
GO:0070888
GO:0008022
GO:0000978
GO:0001078
GO:0071499
GO:0009267
GO:0008203
GO:0006629
GO:0090370
GO:0000122
GO:0010886
GO:1903955
GO:0045944
GO:2000188
GO:0072368
GO:1903146
GO:0055098
GO:0006351
Gene3D 4.10.280.10
InterPro IPR011598
Pfam PF00010
SMART SM00353
SUPFAM SSF47459
PROSITE PS50888

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

PMID:19274049[1]

ECO:0000303

author statement without traceable support used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

PMID:19274049[1]

ECO:0000255

match to sequence model evidence used in manual assertion

InterPro:IPR011598

F

Seeded From UniProt

complete

involved_in

GO:1903955

positive regulation of protein targeting to mitochondrion

PMID:24912190[2]

ECO:0007001

high throughput mutant phenotypic evidence used in manual assertion

P

has_regulation_target:(UniProtKB:O60260)

Seeded From UniProt

complete

involved_in

GO:1903146

regulation of autophagy of mitochondrion

PMID:24912190[2]

ECO:0007001

high throughput mutant phenotypic evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

GO_REF:0000113

ECO:0005556

multiple sequence alignment evidence used in manual assertion

UniProtKB:Q08874

F

Seeded From UniProt

complete

part_of

GO:0032937

SREBP-SCAP-Insig complex

PMID:12202038[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0009267

cellular response to starvation

PMID:25339898[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0001227

DNA-binding transcription repressor activity, RNA polymerase II-specific

PMID:15358760[5]

ECO:0000314

direct assay evidence used in manual assertion

F

occurs_at:(SO:0001952)

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:15358760[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0090370

negative regulation of cholesterol efflux

PMID:15358760[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0072368

regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter

PMID:15358760[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0071499

cellular response to laminar fluid shear stress

PMID:15358760[5]

ECO:0000303

author statement without traceable support used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0070888

E-box binding

PMID:15358760[5]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0071404

cellular response to low-density lipoprotein particle stimulus

PMID:15358760[5]

ECO:0000270

expression pattern evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010886

positive regulation of cholesterol storage

PMID:15358760[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:19098903[6]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:19098903[6]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:15358760[5]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0000978

RNA polymerase II proximal promoter sequence-specific DNA binding

PMID:15358760[5]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:19098903[6]

ECO:0000314

direct assay evidence used in manual assertion

P

has_regulation_target:(UniProtKB:Q07954)

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:12242332[7]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0032937

SREBP-SCAP-Insig complex

PMID:12242332[7]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0008022

protein C-terminus binding

PMID:9242699[8]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P97260

F

Seeded From UniProt

complete

part_of

GO:0005783

endoplasmic reticulum

PMID:12202038[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005783

endoplasmic reticulum

PMID:12941800[9]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:12941800[9]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:12202038[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:12941800[9]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:12242332[7]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

NOT|enables

GO:0000247

C-8 sterol isomerase activity

PMID:12941800[9]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

GO:0032933

SREBP signaling pathway

PMID:27614840[10]

ECO:0000315

P

Figure 2B. RNA interference-mediated knockdown of SREBP-2 decreases the expression of sodium/iodide symporter (NIS) in human MCF-7 cells.

complete
CACAO 12107

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:12446768[11]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

GO:0032933

SREBP signaling pathway

PMID:27614840[10]

ECO:0000314

P

Figure 4B and 4C. nSREBP-2 transcriptionally activates the 5′-Flanking Region of hNIS in human MCF-7 Cells

complete
CACAO 12108

part_of

GO:0043231

intracellular membrane-bounded organelle

GO_REF:0000052

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005739

mitochondrion

GO_REF:0000052

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000052

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:1902895

positive regulation of pri-miRNA transcription by RNA polymerase II

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q3U1N2
ensembl:ENSMUSP00000023100

P

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q3U1N2
ensembl:ENSMUSP00000023100

P

Seeded From UniProt

complete

enables

GO:0044212

transcription regulatory region DNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q3U1N2
ensembl:ENSMUSP00000023100

F

Seeded From UniProt

complete

involved_in

GO:0042632

cholesterol homeostasis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q3U1N2
ensembl:ENSMUSP00000023100

P

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q3U1N2
ensembl:ENSMUSP00000023100

C

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q3U1N2
ensembl:ENSMUSP00000023100

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q3U1N2
ensembl:ENSMUSP00000023100

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q3U1N2
ensembl:ENSMUSP00000023100

C

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q3U1N2
ensembl:ENSMUSP00000023100

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q3U1N2
ensembl:ENSMUSP00000023100

F

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR024097

P

Seeded From UniProt

complete

enables

GO:0046983

protein dimerization activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR011598
InterPro:IPR036638

F

Seeded From UniProt

complete

involved_in

GO:0006629

lipid metabolic process

PMID:7903453[12]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045540

regulation of cholesterol biosynthetic process

Reactome:R-HSA-1655829

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

Reactome:R-HSA-2065550
Reactome:R-HSA-2065549
Reactome:R-HSA-1655851
Reactome:R-HSA-1655831

ECO:0000304

author statement supported by traceable reference used in manual assertion




C

Seeded From UniProt

complete

part_of

GO:0005789

endoplasmic reticulum membrane

Reactome:R-NUL-2317528
Reactome:R-NUL-2317526
Reactome:R-NUL-1655840
Reactome:R-NUL-1655838

ECO:0000304

author statement supported by traceable reference used in manual assertion




C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

Reactome:R-HSA-2426164
Reactome:R-HSA-2426163
Reactome:R-HSA-2426162
Reactome:R-HSA-2426161
Reactome:R-HSA-2426157
Reactome:R-HSA-2426156
Reactome:R-HSA-2426155
Reactome:R-HSA-2426154
Reactome:R-HSA-2426152
Reactome:R-HSA-2426151
Reactome:R-HSA-2426150
Reactome:R-HSA-2426147
Reactome:R-HSA-2426146
Reactome:R-HSA-2426144
Reactome:R-HSA-2065966
Reactome:R-HSA-2065539
Reactome:R-HSA-1655831

ECO:0000304

author statement supported by traceable reference used in manual assertion

















C

Seeded From UniProt

complete

part_of

GO:0000139

Golgi membrane

Reactome:R-NUL-1655840
Reactome:R-HSA-1655851
Reactome:R-HSA-1655842

ECO:0000304

author statement supported by traceable reference used in manual assertion



C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

part_of

GO:0031410

cytoplasmic vesicle

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0968

C

Seeded From UniProt

complete

part_of

GO:0005794

Golgi apparatus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0333

C

Seeded From UniProt

complete

involved_in

GO:0006629

lipid metabolic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0443

P

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

involved_in

GO:0008203

cholesterol metabolic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0153

P

Seeded From UniProt

complete

involved_in

GO:0008202

steroid metabolic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0753

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

part_of

GO:0016021

integral component of membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0812

C

Seeded From UniProt

complete

part_of

GO:0005783

endoplasmic reticulum

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0256

C

Seeded From UniProt

complete

part_of

GO:0012507

ER to Golgi transport vesicle membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0078

C

Seeded From UniProt

complete

part_of

GO:0000139

Golgi membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0134

C

Seeded From UniProt

complete

part_of

GO:0005789

endoplasmic reticulum membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0097

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Vaquerizas, JM et al. (2009) A census of human transcription factors: function, expression and evolution. Nat. Rev. Genet. 10 252-63 PubMed GONUTS page
  2. 2.0 2.1 Ivatt, RM et al. (2014) Genome-wide RNAi screen identifies the Parkinson disease GWAS risk locus SREBF1 as a regulator of mitophagy. Proc. Natl. Acad. Sci. U.S.A. 111 8494-9 PubMed GONUTS page
  3. 3.0 3.1 3.2 Yang, T et al. (2002) Crucial step in cholesterol homeostasis: sterols promote binding of SCAP to INSIG-1, a membrane protein that facilitates retention of SREBPs in ER. Cell 110 489-500 PubMed GONUTS page
  4. Jiang, P et al. (2014) Nutrient deprivation induces α-synuclein aggregation through endoplasmic reticulum stress response and SREBP2 pathway. Front Aging Neurosci 6 268 PubMed GONUTS page
  5. 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 Zeng, L et al. (2004) Sterol-responsive element-binding protein (SREBP) 2 down-regulates ATP-binding cassette transporter A1 in vascular endothelial cells: a novel role of SREBP in regulating cholesterol metabolism. J. Biol. Chem. 279 48801-7 PubMed GONUTS page
  6. 6.0 6.1 6.2 Bell, RD et al. (2009) SRF and myocardin regulate LRP-mediated amyloid-beta clearance in brain vascular cells. Nat. Cell Biol. 11 143-53 PubMed GONUTS page
  7. 7.0 7.1 7.2 Yabe, D et al. (2002) Insig-2, a second endoplasmic reticulum protein that binds SCAP and blocks export of sterol regulatory element-binding proteins. Proc. Natl. Acad. Sci. U.S.A. 99 12753-8 PubMed GONUTS page
  8. Sakai, J et al. (1997) Identification of complexes between the COOH-terminal domains of sterol regulatory element-binding proteins (SREBPs) and SREBP cleavage-activating protein. J. Biol. Chem. 272 20213-21 PubMed GONUTS page
  9. 9.0 9.1 9.2 9.3 Vidal, H et al. (2003) Identification and pharmacological characterization of SRBP-2: a novel SR31747A-binding protein. Cancer Res. 63 4809-18 PubMed GONUTS page
  10. 10.0 10.1 Wen, G et al. (2016) Sterol regulatory element-binding proteins are regulators of the sodium/iodide symporter in mammary epithelial cells. J. Dairy Sci. PubMed GONUTS page
  11. Wang, H et al. (2002) Expression of a novel, sterol-insensitive form of sterol regulatory element binding protein 2 (SREBP2) in male germ cells suggests important cell- and stage-specific functions for SREBP targets during spermatogenesis. Mol. Cell. Biol. 22 8478-90 PubMed GONUTS page
  12. Hua, X et al. (1993) SREBP-2, a second basic-helix-loop-helix-leucine zipper protein that stimulates transcription by binding to a sterol regulatory element. Proc. Natl. Acad. Sci. U.S.A. 90 11603-7 PubMed GONUTS page