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HUMAN:IRF7
Contents
Species (Taxon ID) | Homo sapiens (Human). (9606) | |
Gene Name(s) | IRF7 | |
Protein Name(s) | Interferon regulatory factor 7
IRF-7 | |
External Links | ||
UniProt | Q92985 | |
EMBL | U73036 U53830 U53831 U53832 U53832 AF076494 CH471158 BC136555 | |
CCDS | CCDS7703.1 CCDS7704.1 CCDS7705.1 | |
RefSeq | NP_001563.2 NP_004020.1 NP_004022.2 XP_005252963.1 XP_006725200.1 | |
UniGene | Hs.166120 | |
PDB | 2O61 | |
PDBsum | 2O61 | |
ProteinModelPortal | Q92985 | |
SMR | Q92985 | |
BioGrid | 109873 | |
DIP | DIP-34895N | |
IntAct | Q92985 | |
MINT | MINT-1202972 | |
STRING | 9606.ENSP00000329411 | |
PhosphoSite | Q92985 | |
DMDM | 116242593 | |
MaxQB | Q92985 | |
PaxDb | Q92985 | |
PRIDE | Q92985 | |
Ensembl | ENST00000330243 ENST00000348655 ENST00000397566 ENST00000397574 ENST00000469048 ENST00000533182 ENST00000612534 ENST00000621391 | |
GeneID | 3665 | |
KEGG | hsa:3665 | |
UCSC | uc001lqg.3 uc001lqh.3 uc001lqi.3 | |
CTD | 3665 | |
GeneCards | GC11M000602 | |
HGNC | HGNC:6122 | |
HPA | CAB017694 | |
MIM | 605047 | |
neXtProt | NX_Q92985 | |
PharmGKB | PA29921 | |
eggNOG | NOG39245 | |
GeneTree | ENSGT00760000119093 | |
HOGENOM | HOG000111812 | |
HOVERGEN | HBG105600 | |
InParanoid | Q92985 | |
KO | K09447 | |
OMA | GWKTNFR | |
PhylomeDB | Q92985 | |
TreeFam | TF328512 | |
Reactome | REACT_24938 REACT_24970 REACT_25026 REACT_25078 REACT_25120 REACT_25148 REACT_25162 | |
SignaLink | Q92985 | |
ChiTaRS | IRF7 | |
GeneWiki | IRF7 | |
GenomeRNAi | 3665 | |
NextBio | 14347 | |
PRO | PR:Q92985 | |
Proteomes | UP000005640 UP000005640 | |
Bgee | Q92985 | |
CleanEx | HS_IRF7 | |
ExpressionAtlas | Q92985 | |
Genevestigator | Q92985 | |
GO | GO:0005737 GO:0005829 GO:0010008 GO:0005654 GO:0005634 GO:0003677 GO:0000982 GO:0000979 GO:0006974 GO:0019221 GO:0019043 GO:0016064 GO:0045087 GO:0032607 GO:0032608 GO:0060333 GO:0039530 GO:0002756 GO:2000110 GO:0000122 GO:0032727 GO:0032728 GO:0045944 GO:0045893 GO:0032481 GO:0060340 GO:0002819 GO:0050776 GO:0045655 GO:0034124 GO:0034127 GO:0032479 GO:0009615 GO:0034138 GO:0034142 GO:0034162 GO:0002224 GO:0006366 GO:0035666 GO:0045351 GO:0060337 | |
Gene3D | 1.10.10.10 2.60.200.10 | |
InterPro | IPR019817 IPR001346 IPR019471 IPR017855 IPR008984 IPR011991 | |
Pfam | PF00605 PF10401 | |
PRINTS | PR00267 | |
SMART | SM00348 | |
SUPFAM | SSF49879 | |
PROSITE | PS00601 PS51507 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0032728 |
positive regulation of interferon-beta production |
ECO:0000315 |
P |
Fig. 7BC |
complete | |||||
GO:0005634 |
nucleus |
ECO:0000314 |
C |
Fig. 6D and Fig. 7A |
complete | |||||
enables |
GO:0000981 |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ECO:0000303 |
author statement without traceable support used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0000981 |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ECO:0000255 |
match to sequence model evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0000981 |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ECO:0005556 |
multiple sequence alignment evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051607 |
defense response to virus |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032728 |
positive regulation of interferon-beta production |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032727 |
positive regulation of interferon-alpha production |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0034127 |
regulation of MyD88-independent toll-like receptor signaling pathway |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0034124 |
regulation of MyD88-dependent toll-like receptor signaling pathway |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032608 |
interferon-beta production |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032607 |
interferon-alpha production |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0002819 |
regulation of adaptive immune response |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0000981 |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
occurs_at:(SO:0001952) |
Seeded From UniProt |
complete | ||
enables |
GO:0000978 |
RNA polymerase II proximal promoter sequence-specific DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1096873 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0002376 |
immune system process |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1096873 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0000981 |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1859212 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0060340 |
positive regulation of type I interferon-mediated signaling pathway |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P70434 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0060337 |
type I interferon signaling pathway |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P70434 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0051607 |
defense response to virus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P70434 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P70434 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045351 |
type I interferon biosynthetic process |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P70434 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0034127 |
regulation of MyD88-independent toll-like receptor signaling pathway |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P70434 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0034124 |
regulation of MyD88-dependent toll-like receptor signaling pathway |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P70434 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0032608 |
interferon-beta production |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P70434 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0032607 |
interferon-alpha production |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P70434 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0032481 |
positive regulation of type I interferon production |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P70434 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0016064 |
immunoglobulin mediated immune response |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P70434 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0010468 |
regulation of gene expression |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P70434 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0001158 |
enhancer sequence-specific DNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P70434 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000987 |
proximal promoter sequence-specific DNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P70434 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000981 |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P70434 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0044212 |
transcription regulatory region DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009615 |
response to virus |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006366 |
transcription by RNA polymerase II |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000122 |
negative regulation of transcription by RNA polymerase II |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:2000110 |
negative regulation of macrophage apoptotic process |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0050776 |
regulation of immune response |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045655 |
regulation of monocyte differentiation |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045087 |
innate immune response |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0039530 |
MDA-5 signaling pathway |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032728 |
positive regulation of interferon-beta production |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032727 |
positive regulation of interferon-alpha production |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032479 |
regulation of type I interferon production |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0019043 |
establishment of viral latency |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0060337 |
type I interferon signaling pathway |
Reactome:R-HSA-909733 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0060333 |
interferon-gamma-mediated signaling pathway |
Reactome:R-HSA-877300 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0035666 |
TRIF-dependent toll-like receptor signaling pathway |
Reactome:R-HSA-936964 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
P |
Seeded From UniProt |
complete | |
involved_in |
GO:0032481 |
positive regulation of type I interferon production |
Reactome:R-HSA-1834949 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0010008 |
endosome membrane |
Reactome:R-HSA-975188 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
part_of |
GO:0005829 |
cytosol |
Reactome:R-HSA-975188 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
part_of |
GO:0005654 |
nucleoplasm |
Reactome:R-HSA-9604487 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051607 |
defense response to virus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0002376 |
immune system process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0016032 |
viral process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045087 |
innate immune response |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 Siednienko, J et al. (2011) Nuclear factor κB subunits RelB and cRel negatively regulate Toll-like receptor 3-mediated β-interferon production via induction of transcriptional repressor protein YY1. J. Biol. Chem. 286 44750-63 PubMed GONUTS page
- ↑ 2.0 2.1 Vaquerizas, JM et al. (2009) A census of human transcription factors: function, expression and evolution. Nat. Rev. Genet. 10 252-63 PubMed GONUTS page
- ↑ Schoggins, JW et al. (2011) A diverse range of gene products are effectors of the type I interferon antiviral response. Nature 472 481-5 PubMed GONUTS page
- ↑ Saira, K et al. (2009) The infected cell protein 0 encoded by bovine herpesvirus 1 (bICP0) associates with interferon regulatory factor 7 and consequently inhibits beta interferon promoter activity. J. Virol. 83 3977-81 PubMed GONUTS page
- ↑ 5.0 5.1 Kawai, T et al. (2005) IPS-1, an adaptor triggering RIG-I- and Mda5-mediated type I interferon induction. Nat. Immunol. 6 981-8 PubMed GONUTS page
- ↑ 6.0 6.1 6.2 6.3 6.4 Sgarbanti, M et al. (2007) IRF-7: new role in the regulation of genes involved in adaptive immunity. Ann. N. Y. Acad. Sci. 1095 325-33 PubMed GONUTS page
- ↑ 7.0 7.1 Caillaud, A et al. (2002) Acetylation of interferon regulatory factor-7 by p300/CREB-binding protein (CBP)-associated factor (PCAF) impairs its DNA binding. J. Biol. Chem. 277 49417-21 PubMed GONUTS page
- ↑ 8.0 8.1 8.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 9.0 9.1 9.2 Au, WC et al. (1998) Characterization of the interferon regulatory factor-7 and its potential role in the transcription activation of interferon A genes. J. Biol. Chem. 273 29210-7 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 10.3 10.4 10.5 Ning, S et al. (2011) IRF7: activation, regulation, modification and function. Genes Immun. 12 399-414 PubMed GONUTS page
- ↑ 11.0 11.1 Zhang, L & Pagano, JS (1997) IRF-7, a new interferon regulatory factor associated with Epstein-Barr virus latency. Mol. Cell. Biol. 17 5748-57 PubMed GONUTS page
- ↑ 12.0 12.1 12.2 12.3 Honda, K et al. (2006) Type I interferon [corrected] gene induction by the interferon regulatory factor family of transcription factors. Immunity 25 349-60 PubMed GONUTS page
c
d
e
i
n
p
- GO:0032728 ! positive regulation of interferon-beta production
- GO:0060340 ! positive regulation of type I interferon-mediated signaling pathway
- GO:0045944 ! positive regulation of transcription by RNA polymerase II
- GO:0032727 ! positive regulation of interferon-alpha production
- GO:0045893 ! positive regulation of DNA-templated transcription
- GO:0032481 ! positive regulation of type I interferon production
- Primates
r
- GO:0045655 ! regulation of monocyte differentiation
- GO:0032479 ! regulation of type I interferon production
- GO:0034127 ! regulation of MyD88-independent toll-like receptor signaling pathway
- GO:0006355 ! regulation of DNA-templated transcription
- GO:0010468 ! regulation of gene expression
- GO:0034124 ! regulation of MyD88-dependent toll-like receptor signaling pathway
- GO:0050776 ! regulation of immune response
- GO:0002819 ! regulation of adaptive immune response
- GO:0009615 ! response to virus
- GO:0000978 ! RNA polymerase II cis-regulatory region sequence-specific DNA binding
t
- GO:0044212 ! transcription regulatory region DNA binding
- GO:0006366 ! transcription by RNA polymerase II
- GO:0035666 ! TRIF-dependent toll-like receptor signaling pathway
- GO:0060333 ! type II interferon-mediated signaling pathway
- GO:0045351 ! type I interferon biosynthetic process
- GO:0060337 ! type I interferon-mediated signaling pathway