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HUMAN:H2AY
Contents
Species (Taxon ID) | Homo sapiens (Human). (9606) | |
Gene Name(s) | H2AFY (synonyms: MACROH2A1) | |
Protein Name(s) | Core histone macro-H2A.1
Histone macroH2A1 mH2A1 Histone H2A.y H2A/y Medulloblastoma antigen MU-MB-50.205 | |
External Links | ||
UniProt | O75367 | |
EMBL | AF041483 AF044286 AF054174 AK023409 AC026691 BC013331 BC095406 AY134746 | |
CCDS | CCDS4183.1 CCDS4184.1 CCDS4185.1 | |
RefSeq | NP_001035248.1 NP_004884.1 NP_613075.1 NP_613258.2 | |
UniGene | Hs.420272 Hs.599225 | |
PDB | 1U35 1ZR3 1ZR5 2F8N 2FXK 3HQH 3HSV 3IID 3IIF 3IVB | |
PDBsum | 1U35 1ZR3 1ZR5 2F8N 2FXK 3HQH 3HSV 3IID 3IIF 3IVB | |
ProteinModelPortal | O75367 | |
SMR | O75367 | |
BioGrid | 114927 | |
DIP | DIP-44283N | |
IntAct | O75367 | |
MINT | MINT-2866965 | |
STRING | 9606.ENSP00000353806 | |
PhosphoSite | O75367 | |
SWISS-2DPAGE | O75367 | |
MaxQB | O75367 | |
PaxDb | O75367 | |
PRIDE | O75367 | |
DNASU | 9555 | |
Ensembl | ENST00000304332 ENST00000312469 ENST00000510038 ENST00000511689 | |
GeneID | 9555 | |
KEGG | hsa:9555 | |
UCSC | uc003lam.1 uc003lan.1 uc003lao.1 | |
CTD | 9555 | |
GeneCards | GC05M134669 | |
HGNC | HGNC:4740 | |
MIM | 610054 | |
neXtProt | NX_O75367 | |
PharmGKB | PA29117 | |
eggNOG | COG2110 | |
GeneTree | ENSGT00760000119217 | |
HOVERGEN | HBG009342 | |
InParanoid | O75367 | |
KO | K11251 | |
OMA | QVVQADI | |
OrthoDB | EOG71G9VP | |
PhylomeDB | O75367 | |
TreeFam | TF332276 | |
ChiTaRS | H2AFY | |
EvolutionaryTrace | O75367 | |
GeneWiki | H2AFY | |
GenomeRNAi | 9555 | |
NextBio | 35835 | |
PMAP-CutDB | O75367 | |
PRO | PR:O75367 | |
Proteomes | UP000005640 | |
Bgee | O75367 | |
CleanEx | HS_H2AFY | |
ExpressionAtlas | O75367 | |
Genevestigator | O75367 | |
GO | GO:0001740 GO:0000793 GO:0070062 GO:0000790 GO:0005730 GO:0000786 GO:0005634 GO:0005721 GO:0001739 GO:0031490 GO:0003677 GO:0010385 GO:0019901 GO:0030291 GO:0000182 GO:0044212 GO:0016568 GO:0007549 GO:0071169 GO:1902750 GO:0045814 GO:0033128 GO:0071901 GO:0000122 GO:1901837 GO:0006334 | |
Gene3D | 1.10.20.10 | |
InterPro | IPR021171 IPR009072 IPR007125 IPR002119 IPR002589 | |
Pfam | PF00125 PF01661 | |
PIRSF | PIRSF037942 | |
PRINTS | PR00620 | |
SMART | SM00506 SM00414 | |
SUPFAM | SSF47113 | |
PROSITE | PS51154 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
involved_in |
GO:1902882 |
regulation of response to oxidative stress |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0000784 |
nuclear chromosome, telomeric region |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:1904815 |
negative regulation of protein localization to chromosome, telomeric region |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
transports_or_maintains_localization_of:(UniProtKB:O95271) |
Seeded From UniProt |
complete | ||
involved_in |
GO:0034184 |
positive regulation of maintenance of mitotic sister chromatid cohesion |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0019899 |
enzyme binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045814 |
negative regulation of gene expression, epigenetic |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
|
Seeded From UniProt |
complete | ||
enables |
GO:0000977 |
RNA polymerase II regulatory region sequence-specific DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
|
Seeded From UniProt |
complete | ||
involved_in |
GO:0045618 |
positive regulation of keratinocyte differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0000979 |
RNA polymerase II core promoter sequence-specific DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0061086 |
negative regulation of histone H3-K27 methylation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
causally_upstream_of:(GO:0019216) |
Seeded From UniProt |
complete | ||
involved_in |
GO:0051572 |
negative regulation of histone H3-K4 methylation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
causally_upstream_of:(GO:0019216) |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045815 |
positive regulation of gene expression, epigenetic |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
causally_upstream_of:(GO:0019216) |
Seeded From UniProt |
complete | ||
involved_in |
GO:0019216 |
regulation of lipid metabolic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
occurs_in:(CL:0000182) |
Seeded From UniProt |
complete | ||
enables |
GO:0044212 |
transcription regulatory region DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0040029 |
regulation of gene expression, epigenetic |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0031492 |
nucleosomal DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0031492 |
nucleosomal DNA binding |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:1990841 |
promoter-specific chromatin binding |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0000228 |
nuclear chromosome |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0001740 |
Barr body |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005721 |
pericentric heterochromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0070062 |
extracellular exosome |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:1902750 |
negative regulation of cell cycle G2/M phase transition |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1901837 |
negative regulation of transcription of nucleolar large rRNA by RNA polymerase I |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1901837 |
negative regulation of transcription of nucleolar large rRNA by RNA polymerase I |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0071901 |
negative regulation of protein serine/threonine kinase activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0071169 |
establishment of protein localization to chromatin |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
has_input:(UniProtKB:Q15910) |
Seeded From UniProt |
complete | ||
NOT|involved_in |
GO:0061187 |
regulation of chromatin silencing at rDNA |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045814 |
negative regulation of gene expression, epigenetic |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045814 |
negative regulation of gene expression, epigenetic |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0044212 |
transcription regulatory region DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0033128 |
negative regulation of histone phosphorylation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
|
Seeded From UniProt |
complete | ||
enables |
GO:0031490 |
chromatin DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0031490 |
chromatin DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0030291 |
protein serine/threonine kinase inhibitor activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
has_regulation_target:(UniProtKB:Q99986) |
Seeded From UniProt |
complete | ||
enables |
GO:0019901 |
protein kinase binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0010385 |
double-stranded methylated DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005730 |
nucleolus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
part_of:(CL:0000019) |
Seeded From UniProt |
complete | ||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0000182 |
rDNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000122 |
negative regulation of transcription by RNA polymerase II |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
|
Seeded From UniProt |
complete | ||
involved_in |
GO:0006334 |
nucleosome assembly |
ECO:0000303 |
author statement without traceable support used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000303 |
author statement without traceable support used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0000786 |
nucleosome |
ECO:0000303 |
author statement without traceable support used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006325 |
chromatin organization |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2448285 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
CGD:CAL0000179664 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:102688 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007549 |
dosage compensation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0001740 |
Barr body |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q02874 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0000786 |
nucleosome |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q02874 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0000785 |
chromatin |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q02874 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:1990841 |
promoter-specific chromatin binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9QZQ8 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:1902882 |
regulation of response to oxidative stress |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9QZQ8 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:1901837 |
negative regulation of transcription of nucleolar large rRNA by RNA polymerase I |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9QZQ8 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0031492 |
nucleosomal DNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9QZQ8 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9QZQ8 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003682 |
chromatin binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9QZQ8 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0000793 |
condensed chromosome |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9QZQ8 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0000786 |
nucleosome |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006334 |
nucleosome assembly |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0046982 |
protein heterodimerization activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:1902883 |
negative regulation of response to oxidative stress |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1902884 |
positive regulation of response to oxidative stress |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0001739 |
sex chromatin |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006325 |
chromatin organization |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005694 |
chromosome |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0000786 |
nucleosome |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Dardenne, E et al. (2012) Splicing switch of an epigenetic regulator by RNA helicases promotes tumor-cell invasiveness. Nat. Struct. Mol. Biol. 19 1139-46 PubMed GONUTS page
- ↑ Déjardin, J & Kingston, RE (2009) Purification of proteins associated with specific genomic Loci. Cell 136 175-86 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 Ramamoorthy, M & Smith, S (2015) Loss of ATRX Suppresses Resolution of Telomere Cohesion to Control Recombination in ALT Cancer Cells. Cancer Cell 28 357-69 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 Barrero, MJ et al. (2013) Macro histone variants are critical for the differentiation of human pluripotent cells. J. Biol. Chem. 288 16110-6 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 5.3 5.4 Podrini, C et al. (2015) MacroH2A1 isoforms are associated with epigenetic markers for activation of lipogenic genes in fat-induced steatosis. FASEB J. 29 1676-87 PubMed GONUTS page
- ↑ 6.0 6.1 6.2 Gamble, MJ et al. (2010) The histone variant macroH2A1 marks repressed autosomal chromatin, but protects a subset of its target genes from silencing. Genes Dev. 24 21-32 PubMed GONUTS page
- ↑ 7.0 7.1 Mietton, F et al. (2009) Weak but uniform enrichment of the histone variant macroH2A1 along the inactive X chromosome. Mol. Cell. Biol. 29 150-6 PubMed GONUTS page
- ↑ 8.0 8.1 Souza, PP et al. (2009) The histone methyltransferase SUV420H2 and Heterochromatin Proteins HP1 interact but show different dynamic behaviours. BMC Cell Biol. 10 41 PubMed GONUTS page
- ↑ Principe, S et al. (2013) In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. Proteomics 13 1667-71 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 10.3 10.4 10.5 Kim, W et al. (2012) Macro histone H2A1.2 (macroH2A1) protein suppresses mitotic kinase VRK1 during interphase. J. Biol. Chem. 287 5278-89 PubMed GONUTS page
- ↑ 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 Cong, R et al. (2014) macroH2A1 histone variant represses rDNA transcription. Nucleic Acids Res. 42 181-92 PubMed GONUTS page
- ↑ 12.0 12.1 12.2 12.3 12.4 12.5 Buschbeck, M et al. (2009) The histone variant macroH2A is an epigenetic regulator of key developmental genes. Nat. Struct. Mol. Biol. 16 1074-9 PubMed GONUTS page
- ↑ de Mateo, S et al. (2011) Proteomic characterization of the human sperm nucleus. Proteomics 11 2714-26 PubMed GONUTS page
- ↑ 14.0 14.1 14.2 Lee, Y et al. (1998) Isolation of cDNA clones encoding human histone macroH2A1 subtypes. Biochim. Biophys. Acta 1399 73-7 PubMed GONUTS page
- ↑ 15.0 15.1 15.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Acín-Pérez, R et al. (2004) Respiratory complex III is required to maintain complex I in mammalian mitochondria. Mol. Cell 13 805-15 PubMed GONUTS page
- ↑ Chadwick, BP & Willard, HF (2001) Histone H2A variants and the inactive X chromosome: identification of a second macroH2A variant. Hum. Mol. Genet. 10 1101-13 PubMed GONUTS page
c
e
n
- GO:0071901 ! negative regulation of protein serine/threonine kinase activity
- GO:0000122 ! negative regulation of transcription by RNA polymerase II
- GO:1904815 ! negative regulation of protein localization to chromosome, telomeric region
- GO:0045814 ! negative regulation of gene expression, epigenetic
- GO:1901837 ! negative regulation of transcription of nucleolar large rRNA by RNA polymerase I
- GO:1902883 ! negative regulation of response to oxidative stress
- GO:1902750 ! negative regulation of cell cycle G2/M phase transition
- GO:0000784 ! nuclear chromosome, telomeric region
- GO:0000228 ! nuclear chromosome
- GO:0000790 ! nuclear chromatin
- GO:0005730 ! nucleolus
- GO:0031492 ! nucleosomal DNA binding
- GO:0000786 ! nucleosome
- GO:0006334 ! nucleosome assembly
- GO:0005634 ! nucleus
o
- GO:0043987 ! obsolete histone H3-S10 phosphorylation
- GO:0072355 ! obsolete histone H3-T3 phosphorylation
- GO:0061086 ! obsolete negative regulation of histone H3-K27 methylation
- GO:0033128 ! obsolete negative regulation of histone phosphorylation
- GO:0051572 ! obsolete negative regulation of histone H3-K4 methylation
p
- GO:0005721 ! pericentric heterochromatin
- GO:0034184 ! positive regulation of maintenance of mitotic sister chromatid cohesion
- GO:1902884 ! positive regulation of response to oxidative stress
- GO:0045618 ! positive regulation of keratinocyte differentiation
- Primates
- GO:1990841 ! promoter-specific chromatin binding
- GO:0046982 ! protein heterodimerization activity
- GO:0019901 ! protein kinase binding
- GO:0030291 ! protein serine/threonine kinase inhibitor activity
r
- GO:0000182 ! rDNA binding
- GO:0019216 ! regulation of lipid metabolic process
- GO:0061187 ! regulation of rDNA heterochromatin formation
- GO:1902882 ! regulation of response to oxidative stress
- GO:0000979 ! RNA polymerase II core promoter sequence-specific DNA binding
- GO:0000977 ! RNA polymerase II transcription regulatory region sequence-specific DNA binding
t