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Category:Team Hot Pockets

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StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
updatedbyinstructorDEIRA:RECRZdebstep, Team Hot Pockets2013-04-14 16:04:56 CDTGO:0006302 double-strand break repair (P)PMID:20090937ECO:0000315 mutant phenotype evidence used in manual assertion

In Figure 4B cells with recR mutants show an increased sensitivity to gamma radiation. Figure 6A illustrates that there is repair of DNA fragments 24 hours after irradiation.

challenge
updatedbyinstructorDEIRA:Q9RW50Zdebstep, Team Hot Pockets2013-04-14 16:01:32 CDTGO:0006302 double-strand break repair (P)PMID:20090937ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4B illustrates that doses of gamma radiation causes decreased cell survival in recO mutants. Figure 6A shows reassembly of DNA fragments around 24 hours after irradiation.

challenge
updatedbyinstructorDEIRA:RECFZdebstep, Team Hot Pockets2013-04-14 15:58:05 CDTGO:0006302 double-strand break repair (P)PMID:20090937ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4B. recF mutants have a higher sensitivity to gamma radiation. In Figure 6A DNA repair of the recF mutant is shown by gel electrophoresis.

challenge
updatedbyinstructorDEIRA:RECAZdebstep, Team Hot Pockets2013-04-14 15:49:50 CDTGO:0006302 double-strand break repair (P)PMID:20090937ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4 shows that gamma radiation sensitivity increases in recA mutants. Figure 6 illustrates that DNA repair in recA mutants started becoming visible at 24 hours.

challenge
unacceptable?Zdebstep, Team Hot Pockets2013-04-12 22:02:35 CDTGO:1900192 positive regulation of single-species biofilm formation (Figure 1 illustrates that gltC mutants show decreased biofilm formation in comparison to the wild type.)PMID:23562858IMP: Inferred from Mutant Phenotype
challenge
updatedbyinstructorDEIRD:D0EM60Zdebstep, Team Hot Pockets2013-04-12 08:20:39 CDTGO:0008409 5'-3' exonuclease activity (F)PMID:19944654ECO:0000314 direct assay evidence used in manual assertion

Fig 7 or 8

challenge
updatedbyinstructorECOLX:E2QE90Zdebstep, Team Hot Pockets2013-04-11 21:38:03 CDTGO:0002949 tRNA threonylcarbamoyladenosine modification (P)PMID:21183954ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3C. YgjD is required for t6a modification of tRNAs. E. coli was grown with the inducible arabinose promotor, instead of the ygjD promotor. This strain, with the arabinose promotor, was then grown in the presence and absence of arabinose. In the presence of arabinose the t6a/A ratio was approximately 40 times higher then in the absence of arabinose.

challenge
updatedbyinstructorDEIRA:Q9RWB3Zdebstep, Team Hot Pockets2013-04-11 20:55:21 CDTGO:0036297 interstrand cross-link repair (P)PMID:23239186ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5e, 5f. YeaZ null mutants show sensitivity to cisplatin and MMC. Cisplatin and MMC cause DNA cross links, which will then inhibit replication. Implying that the YeaZ gene is required for repair of DNA cross links.

challenge
updatedbyinstructorHCMVA:TRM2Kalabatd, Team Hot Pockets2013-04-10 12:01:33 CDTGO:0019073 viral DNA genome packaging (P)PMID:23175377ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2A and 2B. In the absence of pUL51 DNA was not packaged in to viral capsids.

challenge
requireschangesHCMVA:TRM2Kalabatd, Team Hot Pockets2013-04-10 12:01:33 CDTGO:0019071 viral DNA cleavage involved in viral genome maturation (P)PMID:23175377ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 1B shows that pUL51 is necessary for cleavage of catemeric DNA genome.

challenge
requireschangesEBVB9:RTAKalabatd, Team Hot Pockets2013-04-09 13:04:54 CDTGO:0010628 positive regulation of gene expression (P)PMID:23135711ECO:0000314 direct assay evidence used in manual assertion

Figure 5A & 5C. BRLF1 can bind to both methylated and unmethylated promoters to activate lytic gene expression.

challenge
acceptable9ADEN:E1ARS7Kalabatd, Team Hot Pockets2013-04-09 11:44:10 CDTGO:0045070 positive regulation of viral genome replication (P)PMID:22357277ECO:0000314 direct assay evidence used in manual assertion

Figure 2A Lane 10.

challenge
acceptableVIBF1:Q5DYQ2Kalabatd, Team Hot Pockets2013-03-27 11:59:05 CDTGO:0004672 protein kinase activity (F)PMID:23171087ECO:0000314 direct assay evidence used in manual assertion

Figure 3A. Lane three indicates that in the presence of SypE and ATP, SypA will be phosphorylated. This demonstrates the Kinase activity of SypE.

challenge
acceptableDEIRD:O83028Zdebstep, Team Hot Pockets2013-03-26 12:25:31 CDTGO:0070895 negative regulation of transposon integration (P)PMID:23461641ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3B. Shows in vivo TnpB down regulation of transposon integration, in the presence of TnpA.

challenge

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Pages in category "Team Hot Pockets"

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