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DEIRA:RECF
Contents
| Species (Taxon ID) | Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422). (243230) | |
| Gene Name(s) | recF | |
| Protein Name(s) | DNA replication and repair protein RecF | |
| External Links | ||
| UniProt | Q9RVE0 | |
| EMBL | AE000513 | |
| PIR | A75438 | |
| RefSeq | NP_294813.1 | |
| PDB | 2O5V | |
| PDBsum | 2O5V | |
| ProteinModelPortal | Q9RVE0 | |
| SMR | Q9RVE0 | |
| STRING | 243230.DR_1089 | |
| EnsemblBacteria | AAF10663 | |
| GeneID | 1799966 | |
| KEGG | dra:DR_1089 | |
| PATRIC | 21629766 | |
| eggNOG | COG1195 | |
| HOGENOM | HOG000269561 | |
| InParanoid | Q9RVE0 | |
| KO | K03629 | |
| OMA | KVQTFIT | |
| OrthoDB | EOG6HTP3X | |
| BioCyc | DRAD243230:GH46-1115-MONOMER | |
| EvolutionaryTrace | Q9RVE0 | |
| Proteomes | UP000002524 | |
| GO | GO:0005737 GO:0005524 GO:0003697 GO:0006260 GO:0006302 GO:0009432 | |
| Gene3D | 3.40.50.300 | |
| HAMAP | MF_00365 | |
| InterPro | IPR003593 IPR001238 IPR018078 IPR027417 | |
| SMART | SM00382 | |
| SUPFAM | SSF52540 | |
| TIGRFAMs | TIGR00611 | |
| PROSITE | PS00617 PS00618 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0006302 |
double-strand break repair |
ECO:0000315 |
P |
Figure 4B. recF mutants have a higher sensitivity to gamma radiation. In Figure 6A DNA repair of the recF mutant is shown by gel electrophoresis. |
complete | |||||
|
involved_in |
GO:0006302 |
double-strand break repair |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006302 |
double-strand break repair |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001282531 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0000731 |
DNA synthesis involved in DNA repair |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
EcoGene:EG10828 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003697 |
single-stranded DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005524 |
ATP binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006281 |
DNA repair |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009432 |
SOS response |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000084138 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000084138 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006260 |
DNA replication |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000084138 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003697 |
single-stranded DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000084138 |
F |
Seeded From UniProt |
complete | ||
|
enables |
GO:0005524 |
ATP binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000084138 |
F |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000084138 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006281 |
DNA repair |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000084138 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0006281 |
DNA repair |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0005524 |
ATP binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0000166 |
nucleotide binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009432 |
SOS response |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006260 |
DNA replication |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Bentchikou, E et al. (2010) A major role of the RecFOR pathway in DNA double-strand-break repair through ESDSA in Deinococcus radiodurans. PLoS Genet. 6 e1000774 PubMed GONUTS page
- ↑ 2.0 2.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
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