ECOLX:E2QE90

Species (Taxon ID)	Escherichia coli. (562)
Gene Name(s)	ygjD (ECO:0000313 with EMBL:CAP77538.1)
Protein Name(s)	tRNA N6-adenosine threonylcarbamoyltransferase (ECO:0000256 with HAMAP-Rule:MF_01445, ECO:0000256 with SAAS:SAAS00018956) N6-L-threonylcarbamoyladenine synthase (ECO:0000256 with HAMAP-Rule:MF_01445) t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD (ECO:0000256 with HAMAP-Rule:MF_01445) tRNA threonylcarbamoyladenosine biosynthesis protein TsaD (ECO:0000256 with HAMAP-Rule:MF_01445)
External Links
UniProt	E2QE90
EMBL	CP007265 CP007390 CP007391 CP007392 CP007393 CP007394 CU651637 HE964769 CCCP010000038 HG976963 LM993812 LM995446 CCNI01000127 JFFO01000067 JFFJ01000048 JNBX01000087 JMIZ01000006 JMJE01000013 JPQG01000001 JEND02000001 JENE03000001 JNOF01000064 JNOE01000092 JRBB01000055 JPKJ01000004 JPKH01000003 JPKK01000005 JPKL01000009 JPMZ01000002
RefSeq	YP_002557930.1
SMR	E2QE90
EnsemblBacteria	AHM29847 CAP77538
GeneID	7397179
KEGG	elf:LF82_3224
PATRIC	48656214
KO	K01409
Proteomes	UP000010085
GO	GO:0005737 GO:0005506 GO:0004222 GO:0016747 GO:0070526
HAMAP	MF_01445
InterPro	IPR000905 IPR017861 IPR017860 IPR022450
Pfam	PF00814
PRINTS	PR00789
TIGRFAMs	TIGR00329 TIGR03723
PROSITE	PS01016

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Extension	Notes	Status
	GO:0002949	tRNA threonylcarbamoyladenosine modification	PMID:21183954	ECO:0000315	mutant phenotype evidence used in manual assertion		P		Figure 3C. YgjD is required for t6a modification of tRNAs. E. coli was grown with the inducible arabinose promotor, instead of the ygjD promotor. This strain, with the arabinose promotor, was then grown in the presence and absence of arabinose. In the presence of arabinose the t6a/A ratio was approximately 40 times higher then in the absence of arabinose.	complete CACAO 7697
involved_in	GO:0002949	tRNA threonylcarbamoyladenosine modification	PMID:21183954	ECO:0000315	mutant phenotype evidence used in manual assertion		P		Seeded From UniProt	complete
involved_in	GO:0090305	nucleic acid phosphodiester bond hydrolysis	GO_REF:0000108	ECO:0000366	evidence based on logical inference from automatic annotation used in automatic assertion	GO:0004519	P		Seeded From UniProt	complete
involved_in	GO:0002949	tRNA threonylcarbamoyladenosine modification	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR022450	P		Seeded From UniProt	complete
enables	GO:0004222	metalloendopeptidase activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR022450	F		Seeded From UniProt	complete
enables	GO:0061711	N(6)-L-threonylcarbamoyladenine synthase activity	GO_REF:0000003	ECO:0000501	evidence used in automatic assertion	EC:2.3.1.234	F		Seeded From UniProt	complete
enables	GO:0016746	transferase activity, transferring acyl groups	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0012	F		Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0238	F		Seeded From UniProt	complete
enables	GO:0008233	peptidase activity	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0645	F		Seeded From UniProt	complete
enables	GO:0004519	endonuclease activity	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0255	F		Seeded From UniProt	complete
enables	GO:0016787	hydrolase activity	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0378	F		Seeded From UniProt	complete
involved_in	GO:0006508	proteolysis	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0645	P		Seeded From UniProt	complete
enables	GO:0016740	transferase activity	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0808	F		Seeded From UniProt	complete
involved_in	GO:0008033	tRNA processing	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0819	P		Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0963	C		Seeded From UniProt	complete
enables	GO:0046872	metal ion binding	GO_REF:0000038	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-KW:KW-0479	F		Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000040	ECO:0000323	imported automatically asserted information used in automatic assertion	UniProtKB-SubCell:SL-0086	C		Seeded From UniProt	complete
enables	GO:0005506	iron ion binding	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000034420	F		Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000034420	C		Seeded From UniProt	complete
involved_in	GO:0002949	tRNA threonylcarbamoyladenosine modification	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000034420	P		Seeded From UniProt	complete
enables	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000034420	F		Seeded From UniProt	complete
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References

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