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YEAST:SIR2

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Species (Taxon ID) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). (559292)
Gene Name(s) SIR2 (synonyms: MAR1)
Protein Name(s) NAD-dependent histone deacetylase SIR2

Regulatory protein SIR2 Silent information regulator 2

External Links
UniProt P06700
EMBL X01419
Z71781
Z74090
BK006938
PIR S05891
RefSeq NP_010242.1
PDB 2HJH
4IAO
PDBsum 2HJH
4IAO
ProteinModelPortal P06700
SMR P06700
BioGrid 32017
DIP DIP-596N
IntAct P06700
MINT MINT-509141
STRING 4932.YDL042C
BindingDB P06700
ChEMBL CHEMBL3275
MaxQB P06700
PaxDb P06700
PeptideAtlas P06700
PRIDE P06700
EnsemblFungi [example_ID YDL042C]
GeneID 851520
KEGG sce:YDL042C
CYGD YDL042c
SGD S000002200
eggNOG COG0846
GeneTree ENSGT00740000115330
HOGENOM HOG000191845
InParanoid P06700
KO K11121
OMA PVKHAEF
OrthoDB EOG7MWH64
BioCyc YEAST:MONOMER3O-4152
Reactome REACT_205607
SABIO-RK P06700
EvolutionaryTrace P06700
NextBio 968896
Proteomes UP000002311
Genevestigator P06700
GO GO:0005677
GO:0000784
GO:0005720
GO:0005724
GO:0005730
GO:0030869
GO:0070403
GO:0017136
GO:0032041
GO:0046969
GO:0046970
GO:0008270
GO:0006333
GO:0000183
GO:0030466
GO:0006348
GO:0001300
GO:0006281
GO:0016575
GO:0070932
GO:0061647
GO:0070933
GO:0045910
GO:0008156
GO:0001302
GO:0006351
Gene3D 3.30.1600.10
3.40.50.1220
InterPro IPR029035
IPR007654
IPR003000
IPR026591
IPR026590
PANTHER PTHR11085
Pfam PF04574
PF02146
SUPFAM SSF52467
PROSITE PS50305

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0090344

negative regulation of cell aging

PMID:10521401[1]

ECO:0000315

P

Fig.1(A)shows that sir2 the mutant strain demonstrated a severe reduction in mean life span(approx.50%). Fig.7(A)Overexpression of SIR2 extends the life span of W303R by approx.30%.

complete

GO:0031047

gene silencing by RNA

PMID:9009207[2]

ECO:0000315

P

Figure 5

complete
CACAO 11168

involved_in

GO:0097695

establishment of protein-containing complex localization to telomere

PMID:26218225[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

has_input:(GO:0005697)

Seeded From UniProt

complete

involved_in

GO:0007062

sister chromatid cohesion

PMID:27185881[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0000784

nuclear chromosome, telomeric region

PMID:27122604[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

C

adjacent_to:(GO:0034399)

Seeded From UniProt

complete

involved_in

GO:0034398

telomere tethering at nuclear periphery

PMID:27122604[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006303

double-strand break repair via nonhomologous end joining

PMID:9501103[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006348

chromatin silencing at telomere

PMID:9501103[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006348

chromatin silencing at telomere

PMID:1913809[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0030466

chromatin silencing at silent mating-type cassette

PMID:3297920[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045910

negative regulation of DNA recombination

PMID:25822194[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:1904524

negative regulation of DNA amplification

PMID:26195783[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0046970

NAD-dependent histone deacetylase activity (H4-K16 specific)

PMID:10693811[11]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0046969

NAD-dependent histone deacetylase activity (H3-K9 specific)

PMID:10693811[11]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0045910

negative regulation of DNA recombination

PMID:16182251[12]

ECO:0000316

genetic interaction evidence used in manual assertion

SGD:S000005929

P

Seeded From UniProt

complete

enables

GO:0032041

NAD-dependent histone deacetylase activity (H3-K14 specific)

PMID:10693811[11]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

contributes_to

GO:0031491

nucleosome binding

PMID:19217406[13]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0030869

RENT complex

PMID:10219244[14]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0030466

chromatin silencing at silent mating-type cassette

PMID:11950950[15]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0017136

NAD-dependent histone deacetylase activity

PMID:10811920[16]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0008156

negative regulation of DNA replication

PMID:15082529[17]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006348

chromatin silencing at telomere

PMID:11950950[15]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006333

chromatin assembly or disassembly

PMID:11553718[18]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005730

nucleolus

PMID:9214640[19]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005724

nuclear telomeric heterochromatin

PMID:9000052[20]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005720

nuclear heterochromatin

PMID:20176978[21]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005677

chromatin silencing complex

PMID:9122169[22]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0001302

replicative cell aging

PMID:15722108[23]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0001300

chronological cell aging

PMID:16286010[24]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0000784

nuclear chromosome, telomeric region

PMID:9710643[25]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0000183

chromatin silencing at rDNA

PMID:2647300[26]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006325

chromatin organization

PMID:26951198[27]

ECO:0000316

genetic interaction evidence used in manual assertion

SGD:S000002517

P

Seeded From UniProt

complete

enables

GO:0070403

NAD+ binding

PMID:21873635[28]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000119154
PomBase:SPBC16D10.07c
UniProtKB:Q8IXJ6

F

Seeded From UniProt

complete

enables

GO:0046969

NAD-dependent histone deacetylase activity (H3-K9 specific)

PMID:21873635[28]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000872240
PomBase:SPBC16D10.07c
SGD:S000002200

F

Seeded From UniProt

complete

enables

GO:0045129

NAD-independent histone deacetylase activity

PMID:21873635[28]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000872240
SGD:S000005429

F

Seeded From UniProt

complete

part_of

GO:0034967

Set3 complex

PMID:21873635[28]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000872240
SGD:S000005429

C

Seeded From UniProt

complete

enables

GO:0034739

histone deacetylase activity (H4-K16 specific)

PMID:21873635[28]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000872240
PomBase:SPBC16D10.07c

F

Seeded From UniProt

complete

enables

GO:0032041

NAD-dependent histone deacetylase activity (H3-K14 specific)

PMID:21873635[28]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000872240
SGD:S000002200

F

Seeded From UniProt

complete

part_of

GO:0031618

nuclear pericentric heterochromatin

PMID:21873635[28]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000872240
PomBase:SPBC16D10.07c

C

Seeded From UniProt

complete

contributes_to

GO:0031491

nucleosome binding

PMID:21873635[28]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000872240
SGD:S000002200

F

Seeded From UniProt

complete

enables

GO:0017136

NAD-dependent histone deacetylase activity

PMID:21873635[28]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0024291
FB:FBgn0038788
MGI:MGI:2135607
PANTHER:PTN000119154
SGD:S000002200
SGD:S000005429
SGD:S000005551
SGD:S000005936
UniProtKB:Q96EB6

F

Seeded From UniProt

complete

enables

GO:0017136

NAD-dependent histone deacetylase activity

PMID:21873635[28]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0024291
FB:FBgn0038788
MGI:MGI:2135607
PANTHER:PTN000119154
SGD:S000002200
SGD:S000005429
SGD:S000005551
SGD:S000005936
UniProtKB:Q8IXJ6
UniProtKB:Q96EB6

F

Seeded From UniProt

complete

part_of

GO:0005730

nucleolus

PMID:21873635[28]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000872240
SGD:S000002200

C

Seeded From UniProt

complete

part_of

GO:0005724

nuclear telomeric heterochromatin

PMID:21873635[28]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000872240
SGD:S000002200

C

Seeded From UniProt

complete

part_of

GO:0005720

nuclear heterochromatin

PMID:21873635[28]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000872240
SGD:S000002200

C

Seeded From UniProt

complete

part_of

GO:0005677

chromatin silencing complex

PMID:21873635[28]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000872240
SGD:S000002200

C

Seeded From UniProt

complete

part_of

GO:0000790

nuclear chromatin

PMID:21873635[28]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000872240
PomBase:SPBC16D10.07c

C

Seeded From UniProt

complete

involved_in

GO:0016575

histone deacetylation

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0017136

P

Seeded From UniProt

complete

involved_in

GO:0016575

histone deacetylation

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0017136

P

Seeded From UniProt

complete

involved_in

GO:0016575

histone deacetylation

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0017136

P

Seeded From UniProt

complete

involved_in

GO:0016575

histone deacetylation

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0045129

P

Seeded From UniProt

complete

involved_in

GO:0061647

histone H3-K9 modification

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0046969

P

Seeded From UniProt

complete

involved_in

GO:0061647

histone H3-K9 modification

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0046969

P

Seeded From UniProt

complete

involved_in

GO:0070932

histone H3 deacetylation

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0032041

P

Seeded From UniProt

complete

involved_in

GO:0070932

histone H3 deacetylation

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0032041

P

Seeded From UniProt

complete

involved_in

GO:0070933

histone H4 deacetylation

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0046970

P

Seeded From UniProt

complete

involved_in

GO:0070933

histone H4 deacetylation

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0034739

P

Seeded From UniProt

complete

involved_in

GO:1990619

histone H3-K9 deacetylation

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0046969

P

Seeded From UniProt

complete

involved_in

GO:1990619

histone H3-K9 deacetylation

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0046969

P

Seeded From UniProt

complete

enables

GO:0070403

NAD+ binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR003000

F

Seeded From UniProt

complete

involved_in

GO:0006325

chromatin organization

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0156

P

Seeded From UniProt

complete

involved_in

GO:0006974

cellular response to DNA damage stimulus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0227

P

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0378

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539

C

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0234

P

Seeded From UniProt

complete

part_of

GO:0005730

nucleolus

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0188

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Kaeberlein, M et al. (1999) The SIR2/3/4 complex and SIR2 alone promote longevity in Saccharomyces cerevisiae by two different mechanisms. Genes Dev. 13 2570-80 PubMed GONUTS page
  2. Bryk, M et al. (1997) Transcriptional silencing of Ty1 elements in the RDN1 locus of yeast. Genes Dev. 11 255-69 PubMed GONUTS page
  3. Hass, EP & Zappulla, DC (2015) The Ku subunit of telomerase binds Sir4 to recruit telomerase to lengthen telomeres in S. cerevisiae. Elife 4 PubMed GONUTS page
  4. Chen, YF et al. (2016) Determinants of Sir2-Mediated, Silent Chromatin Cohesion. Mol. Cell. Biol. 36 2039-50 PubMed GONUTS page
  5. 5.0 5.1 Laporte, D et al. (2016) Quiescent Saccharomyces cerevisiae forms telomere hyperclusters at the nuclear membrane vicinity through a multifaceted mechanism involving Esc1, the Sir complex, and chromatin condensation. Mol. Biol. Cell 27 1875-84 PubMed GONUTS page
  6. 6.0 6.1 Boulton, SJ & Jackson, SP (1998) Components of the Ku-dependent non-homologous end-joining pathway are involved in telomeric length maintenance and telomeric silencing. EMBO J. 17 1819-28 PubMed GONUTS page
  7. Aparicio, OM et al. (1991) Modifiers of position effect are shared between telomeric and silent mating-type loci in S. cerevisiae. Cell 66 1279-87 PubMed GONUTS page
  8. Rine, J & Herskowitz, I (1987) Four genes responsible for a position effect on expression from HML and HMR in Saccharomyces cerevisiae. Genetics 116 9-22 PubMed GONUTS page
  9. Peng, J et al. (2015) Inhibition of telomere recombination by inactivation of KEOPS subunit Cgi121 promotes cell longevity. PLoS Genet. 11 e1005071 PubMed GONUTS page
  10. Jack, CV et al. (2015) Regulation of ribosomal DNA amplification by the TOR pathway. Proc. Natl. Acad. Sci. U.S.A. 112 9674-9 PubMed GONUTS page
  11. 11.0 11.1 11.2 Imai, S et al. (2000) Transcriptional silencing and longevity protein Sir2 is an NAD-dependent histone deacetylase. Nature 403 795-800 PubMed GONUTS page
  12. Das, SP & Sinha, P (2005) The budding yeast protein Chl1p has a role in transcriptional silencing, rDNA recombination, and aging. Biochem. Biophys. Res. Commun. 337 167-72 PubMed GONUTS page
  13. Martino, F et al. (2009) Reconstitution of yeast silent chromatin: multiple contact sites and O-AADPR binding load SIR complexes onto nucleosomes in vitro. Mol. Cell 33 323-34 PubMed GONUTS page
  14. Shou, W et al. (1999) Exit from mitosis is triggered by Tem1-dependent release of the protein phosphatase Cdc14 from nucleolar RENT complex. Cell 97 233-44 PubMed GONUTS page
  15. 15.0 15.1 Armstrong, CM et al. (2002) Mutations in Saccharomyces cerevisiae gene SIR2 can have differential effects on in vivo silencing phenotypes and in vitro histone deacetylation activity. Mol. Biol. Cell 13 1427-38 PubMed GONUTS page
  16. Landry, J et al. (2000) The silencing protein SIR2 and its homologs are NAD-dependent protein deacetylases. Proc. Natl. Acad. Sci. U.S.A. 97 5807-11 PubMed GONUTS page
  17. Pappas, DL Jr et al. (2004) The NAD(+)-dependent Sir2p histone deacetylase is a negative regulator of chromosomal DNA replication. Genes Dev. 18 769-81 PubMed GONUTS page
  18. Thrower, DA & Bloom, K (2001) Dicentric chromosome stretching during anaphase reveals roles of Sir2/Ku in chromatin compaction in budding yeast. Mol. Biol. Cell 12 2800-12 PubMed GONUTS page
  19. Gotta, M et al. (1997) Localization of Sir2p: the nucleolus as a compartment for silent information regulators. EMBO J. 16 3243-55 PubMed GONUTS page
  20. Strahl-Bolsinger, S et al. (1997) SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast. Genes Dev. 11 83-93 PubMed GONUTS page
  21. Lynch, PJ & Rusche, LN (2010) An auxiliary silencer and a boundary element maintain high levels of silencing proteins at HMR in Saccharomyces cerevisiae. Genetics 185 113-27 PubMed GONUTS page
  22. Moazed, D et al. (1997) Silent information regulator protein complexes in Saccharomyces cerevisiae: a SIR2/SIR4 complex and evidence for a regulatory domain in SIR4 that inhibits its interaction with SIR3. Proc. Natl. Acad. Sci. U.S.A. 94 2186-91 PubMed GONUTS page
  23. Kaeberlein, M et al. (2005) Genes determining yeast replicative life span in a long-lived genetic background. Mech. Ageing Dev. 126 491-504 PubMed GONUTS page
  24. Fabrizio, P et al. (2005) Sir2 blocks extreme life-span extension. Cell 123 655-67 PubMed GONUTS page
  25. Bourns, BD et al. (1998) Sir proteins, Rif proteins, and Cdc13p bind Saccharomyces telomeres in vivo. Mol. Cell. Biol. 18 5600-8 PubMed GONUTS page
  26. Gottlieb, S & Esposito, RE (1989) A new role for a yeast transcriptional silencer gene, SIR2, in regulation of recombination in ribosomal DNA. Cell 56 771-6 PubMed GONUTS page
  27. Zaman, S et al. (2016) Mechanism of Regulation of Intrachromatid Recombination and Long-Range Chromosome Interactions in Saccharomyces cerevisiae. Mol. Cell. Biol. 36 1451-63 PubMed GONUTS page
  28. 28.00 28.01 28.02 28.03 28.04 28.05 28.06 28.07 28.08 28.09 28.10 28.11 28.12 28.13 28.14 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page