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User:Kalishrb

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Phage Hunters Spring 2016

My Annotations

StatusPageDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
unacceptable9CAUD:Q4Z9Y52016-04-27 10:07:55 CDTGO:0039602 suppression by virus of host transcription initiation from RNA polymerase II promoter (P)PMID:23178120ECO:0000314 direct assay evidence used in manual assertion

The authors tested the effect of staphylococcus phage G1 gp67 on transcription of different types of bacteria. In figure 1 of the paper linked, it is shown that the addition of the protein gp67 inhibits the transcription of RNA in Staphylococcus aureus, but has no effect on the other bacteria tested upon.

challenge
unacceptable9CAUD:K7QMU42016-05-11 12:45:33 CDTGO:0039602 suppression by virus of host transcription initiation from RNA polymerase II promoter (Blastp of Staph Phage JD007 gp 213 returned 99% identity and 100% query cover with the previously annotated protein Staph Phage G1 gp067. HHpred returned 100% probably and E value of 10^-63.)other:GO_REF:0000100ISS: Inferred from Sequence Similarity PMID:23178120

UniProtKB:Q4Z9Y5

challenge
unacceptable9CAUD:I6PCI82016-04-27 10:08:29 CDTGO:0039602 suppression by virus of host transcription initiation from RNA polymerase II promoter (Blastp of Staph Phage Gh15 gp 128 returned 99% identity and 100% query cover with the previously annotated protein Staph Phage G1 gp067.)other:GO_REF:0000100ISA: Inferred from Sequence Alignment PMID:23178120

UniProtKB:Q4Z9Y5

challenge
unacceptable9CAUD:A0A076YNB02016-05-11 12:38:48 CDTGO:0039602 suppression by virus of host transcription initiation from RNA polymerase II promoter (Blastp Staph Phage P108 gp028 returned 99% identity and 100% query cover with the previously annotated protein Staph Phage G1 gp067.)other:GO_REF:0000100ISA: Inferred from Sequence Alignment PMID:23178120

UniProtKB:Q4Z9Y5

challenge

acceptable:0
unacceptable:4
requires_changes:0
flagged:0

Annotations challenged by Kalishrb

StatusAuthor,GroupPageGO Term (Aspect)ReferenceEvidenceLinksPage history
unacceptableAll5,
Team You can't B. cereus
9CAUD:A0A0K2D093GO:0004170 - dUTP diphosphatase activity (F)PMID:23894549ECO:0000314 direct assay evidence used in manual assertionchallengeC: 3
unacceptableMnguy1,
Team Blue B
BPT7:DPOLGO:0004527 - exonuclease activity (F)2703498:2703498ECO:0000315 mutant phenotype evidence used in manual assertionchallengeC: 5
unacceptableOdilia1,
Team Green B
BPT4:D9IEK2GO:0019012 - virion (C)PMID:2963141ECO:0000314 direct assay evidence used in manual assertionchallengeC: 3
unacceptableLian2,
Team Purple B
9CAUD:A0A0K2D0M7GO:0005524 - ATP binding (F)PMID:8444794ECO:0000314 direct assay evidence used in manual assertionchallengeC: 2

0 annotations fixed by Kalishrb

What do the icons mean in the status column?

assessment icons.jpg