User:Cbergren

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
acceptable	ORYSJ:CESA7	2013-04-11 22:26:02 CDT	GO:0009834 plant-type secondary cell wall biogenesis (P)	PMID:12970476	ECO:0000266 sequence orthology evidence used in manual assertion	Figure 4 shows phylogenetic relationship of CesA genes, using OsCesA amino acid sequences shown in Figure 3.	challenge
acceptable	ORYSJ:CESA4	2013-04-11 22:40:10 CDT	GO:0009834 plant-type secondary cell wall biogenesis (P)	PMID:12970476	ECO:0000266 sequence orthology evidence used in manual assertion	Figure 4 shows phylogenetic relationship of CesA genes, using OsCesA amino acid sequences shown in Figure 3.	challenge
acceptable	ORYSJ:CESA9	2013-04-11 22:47:11 CDT	GO:0009834 plant-type secondary cell wall biogenesis (P)	PMID:12970476	ECO:0000266 sequence orthology evidence used in manual assertion	Figure 4 shows phylogenetic relationship of CesA genes, using OsCesA amino acid sequences shown in Figure 3.	challenge
acceptable	ARATH:CESAA	2013-04-24 12:42:19 CDT	GO:0009833 primary cell wall biogenesis (P)	PMID:23386682	ECO:0000250 sequence similarity evidence used in manual assertion	Supplementary Figure 1 shows phylogenetic tree of CESA genes based on protein sequences of Arabidopsis, rice, and Brachypodium.	challenge
acceptable	ARATH:CESA5	2013-04-24 12:51:08 CDT	GO:0009833 primary cell wall biogenesis (P)	PMID:23386682	ECO:0000250 sequence similarity evidence used in manual assertion	Supplementary Figure 1 shows phylogenetic tree of CESA genes based on protein sequences of Arabidopsis, rice, and Brachypodium.	challenge
acceptable	ORYSA:J9PFC8	2013-04-25 15:40:37 CDT	GO:0007141 male meiosis I (P)	PMID:22859673	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 6.	challenge
acceptable	ORYSA:J9PFC8	2013-04-25 15:44:55 CDT	GO:0007143 female meiosis (P)	PMID:22859673	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 3.	challenge
acceptable	ORYSA:J9PFC8	2013-04-25 15:58:10 CDT	GO:0006281 DNA repair (P)	PMID:22859673	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 8.	challenge
updatedbyinstructor	ORYSJ:Q10SS3	2013-05-23 17:56:37 CDT	GO:0048576 positive regulation of short-day photoperiodism, flowering (P)	PMID:23437005	ECO:0000315 mutant phenotype evidence used in manual assertion	See Figure 1 for mutant and WT characterization of Edh4.	challenge
updatedbyinstructor	ORYSJ:ORC3	2013-05-23 18:10:00 CDT	GO:0048527 lateral root development (P)	PMID:23346890	ECO:0000315 mutant phenotype evidence used in manual assertion	See Figure 1.	challenge
requireschanges	ORYSJ:Q7XHW5	2013-05-25 15:31:52 CDT	GO:0009686 gibberellin biosynthetic process (P)	PMID:23319637	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 4.	challenge
requireschanges	ORYSJ:Q0DS59	2013-05-25 15:33:28 CDT	GO:0009686 gibberellin biosynthetic process (P)	PMID:23319637	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 4.	challenge
updatedbyinstructor	ORYSJ:VIT11	2013-05-25 16:03:26 CDT	GO:0005381 iron ion transmembrane transporter activity (F)	PMID:22731699	ECO:0000315 mutant phenotype evidence used in manual assertion	Fig 4, 5 & 6	challenge
updatedbyinstructor	ORYSJ:VIT12	2013-05-25 16:05:12 CDT	GO:0005381 iron ion transmembrane transporter activity (F)	PMID:22731699	ECO:0000315 mutant phenotype evidence used in manual assertion	Fig 4, 5 & 6	challenge
acceptable	ORYSJ:Q7XC81	2013-05-25 16:23:41 CDT	GO:0009834 secondary cell wall biogenesis (P)	PMID:22329407	ECO:0000315 mutant phenotype evidence used in manual assertion	See Figure 4 for gene localization, Figure 7 for mutant phenotypes.	challenge

acceptable:9
unacceptable:0
requires_changes:2
flagged:0

Annotations challenged by Cbergren

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history

0 annotations fixed by Cbergren

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