GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
ORYSJ:CESA4
Contents
| Species (Taxon ID) | Oryza sativa subsp. japonica (Rice). (39947) | |
| Gene Name(s) | CESA4 | |
| Protein Name(s) | Cellulose synthase A catalytic subunit 4 [UDP-forming]
OsCesA4 | |
| External Links | ||
| UniProt | Q5JN63 | |
| EMBL | AP003237 AP008207 AK100475 | |
| RefSeq | NP_001044252.1 | |
| UniGene | Os.18724 | |
| ProteinModelPortal | Q5JN63 | |
| STRING | 39946.BGIOSIBCE003623 | |
| CAZy | GT2 | |
| EnsemblPlants | OS01T0750300-01 | |
| GeneID | 4324625 | |
| KEGG | osa:4324625 | |
| Gramene | Q5JN63 | |
| eggNOG | COG1215 | |
| InParanoid | Q5JN63 | |
| KO | K10999 | |
| OMA | DENERSM | |
| UniPathway | UPA00695 | |
| Proteomes | UP000000763 | |
| ExpressionAtlas | Q5JN63 | |
| GO | GO:0005618 GO:0016021 GO:0005886 GO:0016760 GO:0008270 GO:0071555 GO:0030244 GO:0042742 GO:0050832 GO:0010413 GO:0010116 GO:0006970 GO:0009414 GO:0009834 GO:0045492 | |
| Gene3D | 3.30.40.10 | |
| InterPro | IPR005150 IPR029044 IPR001841 IPR013083 | |
| Pfam | PF03552 | |
| SMART | SM00184 | |
| SUPFAM | SSF53448 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
| GO:0009834 |
plant-type secondary cell wall biogenesis |
ECO:0000266 |
|
P |
Figure 4 shows phylogenetic relationship of CesA genes, using OsCesA amino acid sequences shown in Figure 3. |
complete | ||||
|
involved_in |
GO:0009834 |
plant-type secondary cell wall biogenesis |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0030244 |
cellulose biosynthetic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0009834 |
plant-type secondary cell wall biogenesis |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0030244 |
cellulose biosynthetic process |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000999295 |
P |
Seeded From UniProt |
complete | ||
|
enables |
GO:0016759 |
cellulose synthase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000999295 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0009833 |
plant-type primary cell wall biogenesis |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001410221 |
P |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001410221 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005802 |
trans-Golgi network |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001410221 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005794 |
Golgi apparatus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN001410221 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0016020 |
membrane |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016760 |
cellulose synthase (UDP-forming) activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0030244 |
cellulose biosynthetic process |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016760 |
cellulose synthase (UDP-forming) activity |
ECO:0000501 |
evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005886 |
plasma membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016757 |
transferase activity, transferring glycosyl groups |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016021 |
integral component of membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0071555 |
cell wall organization |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0030244 |
cellulose biosynthetic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0016740 |
transferase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 Tanaka, K et al. (2003) Three distinct rice cellulose synthase catalytic subunit genes required for cellulose synthesis in the secondary wall. Plant Physiol. 133 73-83 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
c
p
