User:Amendes

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
unacceptable	MOUSE:DCP2	2016-04-12 09:34:18 CDT	GO:0071222 cellular response to lipopolysaccharide (P)	PMID:27034373	ECO:0000315 mutant phenotype evidence used in manual assertion	In Fig.3E the up regulation of the non coding RNA after LPS exposure is diminished in the Dcp2 knockout in the bone marrow derived mouse macrophages	challenge
unacceptable	MOUSE:HNRPD	2016-04-12 09:51:29 CDT	GO:0071222 cellular response to lipopolysaccharide (P)	PMID:27034373	ECO:0000315 mutant phenotype evidence used in manual assertion	Fg. 4C An increased gene expression response to LPS when hnrnpd is knocked out.	challenge
acceptable	MOUSE:HNRPD	2016-04-12 10:08:20 CDT	GO:0000790 nuclear chromatin (C)	PMID:27034373	ECO:0000314 direct assay evidence used in manual assertion	Fg.S7G Chip of hnrpd shows enrichment in chromatin.	challenge
unacceptable	HUMAN:TERF2	2016-04-15 10:02:47 CDT		PMID:26856421	ECO:0000314 direct assay evidence used in manual assertion	Fg. 4d 4e: shows DNA binding	challenge
updatedbyinstructor	HUMAN:CTSL2	2016-04-19 01:54:11 CDT	GO:0005737 cytoplasm (C)	PMID:26920047	ECO:0000314 direct assay evidence used in manual assertion	Fg. 5C Immunostaining of hemintreated cells revealed time-dependent accumulation of SCP4 in the cytoplasm.	challenge
acceptable	HUMAN:CTSL2	2016-04-19 02:04:41 CDT	GO:0008420 CTD phosphatase activity (F)	PMID:26920047	ECO:0000314 direct assay evidence used in manual assertion	Fg 1B. SCP4 functions as a Ser5-preferential CTD phosphatase in cells.	challenge
unacceptable	HUMAN:CTSL2	2016-04-19 02:12:24 CDT	GO:0004647 phosphoserine phosphatase activity (F)	PMID:26920047	ECO:0000314 direct assay evidence used in manual assertion	Fg. 2C SCP4 can function as a Ser5-specific CTD phosphatase in cells.	challenge
acceptable	HUMAN:CTSL2	2016-04-19 02:22:48 CDT	GO:0000790 nuclear chromatin (C)	PMID:26920047	ECO:0000314 direct assay evidence used in manual assertion	Fg. 5B dynamic SCP4 relocation from the chromatin, out of the nucleus, and towards the cytoplasm.	challenge

acceptable:3
unacceptable:4
requires_changes:0
flagged:0

Annotations challenged by Amendes

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history

0 annotations fixed by Amendes

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