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MOUSE:MYOD1
Contents
Species (Taxon ID) | Mus musculus (Mouse). (10090) | |
Gene Name(s) | Myod1 (synonyms: Myod) | |
Protein Name(s) | Myoblast determination protein 1 | |
External Links | ||
UniProt | P10085 | |
EMBL | M18779 X61655 M84918 AK076157 AK142859 BC103613 BC103618 BC103619 | |
CCDS | CCDS21277.1 | |
PIR | A29636 | |
RefSeq | NP_034996.2 | |
UniGene | Mm.1526 | |
PDB | 1MDY | |
PDBsum | 1MDY | |
ProteinModelPortal | P10085 | |
SMR | P10085 | |
BioGrid | 201673 | |
DIP | DIP-37N | |
IntAct | P10085 | |
MINT | MINT-263097 | |
STRING | 10090.ENSMUSP00000072330 | |
PhosphoSite | P10085 | |
PRIDE | P10085 | |
Ensembl | ENSMUST00000072514 | |
GeneID | 17927 | |
KEGG | mmu:17927 | |
UCSC | uc012fkv.1 | |
CTD | 4654 | |
MGI | MGI:97275 | |
eggNOG | NOG292792 | |
GeneTree | ENSGT00530000063004 | |
HOGENOM | HOG000234800 | |
HOVERGEN | HBG006429 | |
InParanoid | P10085 | |
KO | K09064 | |
OMA | DPRLMHV | |
OrthoDB | EOG76QFK1 | |
TreeFam | TF316344 | |
Reactome | REACT_258600 | |
EvolutionaryTrace | P10085 | |
NextBio | 292797 | |
PRO | PR:P10085 | |
Proteomes | UP000000589 | |
Bgee | P10085 | |
CleanEx | MM_MYOD1 | |
Genevestigator | P10085 | |
GO | GO:0005737 GO:0030016 GO:0000790 GO:0005654 GO:0005634 GO:0005667 GO:0031490 GO:0001047 GO:0003677 GO:0019899 GO:0046982 GO:0000978 GO:0001077 GO:0003705 GO:0001228 GO:0043565 GO:0003700 GO:0008134 GO:0031625 GO:0055007 GO:0071392 GO:0071385 GO:0071453 GO:0009267 GO:0043966 GO:0043967 GO:0007517 GO:0045445 GO:0007518 GO:0014908 GO:1901741 GO:0043415 GO:0045944 GO:0045893 GO:0000381 GO:0006357 GO:0035914 GO:0043503 GO:0048741 GO:0007519 GO:0051146 GO:0006366 | |
Gene3D | 4.10.280.10 | |
InterPro | IPR002546 IPR011598 IPR022032 | |
Pfam | PF01586 PF00010 PF12232 | |
SMART | SM00520 SM00353 | |
SUPFAM | SSF47459 | |
PROSITE | PS50888 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0010468 |
regulation of gene expression |
ECO:0000314 |
P |
Figure #1 shows "MyoD co-induces the expression of p57 and kcnq1 during muscle differentiation" |
complete | |||||
involved_in |
GO:1905382 |
positive regulation of snRNA transcription by RNA polymerase II |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:1990841 |
promoter-specific chromatin binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051149 |
positive regulation of muscle cell differentiation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003682 |
chromatin binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003713 |
transcription coactivator activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0010468 |
regulation of gene expression |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0001228 |
DNA-binding transcription activator activity, RNA polymerase II-specific |
ECO:0000305 |
curator inference used in manual assertion |
GO:0000978,GO:0045944 |
F |
occurs_at:(SO:0001952) |
Seeded From UniProt |
complete | |
enables |
GO:0000978 |
RNA polymerase II proximal promoter sequence-specific DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0019899 |
enzyme binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0000790 |
nuclear chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0071392 |
cellular response to estradiol stimulus |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0055007 |
cardiac muscle cell differentiation |
ECO:0000303 |
author statement without traceable support used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0043967 |
histone H4 acetylation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0043966 |
histone H3 acetylation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0035914 |
skeletal muscle cell differentiation |
ECO:0000303 |
author statement without traceable support used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0031490 |
chromatin DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0008134 |
transcription factor binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005667 |
transcription factor complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
contributes_to |
GO:0003677 |
DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0070888 |
E-box binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:1901741 |
positive regulation of myoblast fusion |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000164853 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0048743 |
positive regulation of skeletal muscle fiber development |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:97276 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:97252 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045663 |
positive regulation of myoblast differentiation |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:97276 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0035914 |
skeletal muscle cell differentiation |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:97252 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0002922 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0001228 |
DNA-binding transcription activator activity, RNA polymerase II-specific |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:97252 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000978 |
RNA polymerase II proximal promoter sequence-specific DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:97275 |
F |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:2000818 |
negative regulation of myoblast proliferation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:1901741 |
positive regulation of myoblast fusion |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0071453 |
cellular response to oxygen levels |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0071385 |
cellular response to glucocorticoid stimulus |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0071356 |
cellular response to tumor necrosis factor |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0070888 |
E-box binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:631429 |
F |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0051149 |
positive regulation of muscle cell differentiation |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0051146 |
striated muscle cell differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
occurs_in:(EMAPA:35578) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0048741 |
skeletal muscle fiber development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
results_in_development_of:(CL:0002372) |
Seeded From UniProt |
complete | ||
enables |
GO:0046982 |
protein heterodimerization activity |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:103296 |
P |
|
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:102463 |
P |
|
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1289184 |
P |
has_regulation_target:(MGI:MGI:97276) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:103296 |
P |
has_regulation_target:(MGI:MGI:97276) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:99458 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1926387 |
P |
has_regulation_target:(MGI:MGI:88413) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
has_regulation_target:(MGI:MGI:1916813) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
has_regulation_target:(MGI:MGI:109617) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045445 |
myoblast differentiation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045445 |
myoblast differentiation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
results_in_acquisition_of_features_of:(CL:0000057) |
Seeded From UniProt |
complete | ||
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_input:(MGI:MGI:1916813) |
Seeded From UniProt |
complete | ||
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0043503 |
skeletal muscle fiber adaptation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
occurs_in:(CL:0002372) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0043484 |
regulation of RNA splicing |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0043415 |
positive regulation of skeletal muscle tissue regeneration |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
regulates_o_occurs_in:(EMAPA:35578) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0043403 |
skeletal muscle tissue regeneration |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:631429 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0035914 |
skeletal muscle cell differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0035257 |
nuclear hormone receptor binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0031625 |
ubiquitin protein ligase binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0031490 |
chromatin DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_output:(MGI:MGI:1913389) |
Seeded From UniProt |
complete | ||
part_of |
GO:0030016 |
myofibril |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0030016 |
myofibril |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0016604 |
nuclear body |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0014908 |
myotube differentiation involved in skeletal muscle regeneration |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
results_in_acquisition_of_features_of:(CL:0002372) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0014904 |
myotube cell development |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0014902 |
myotube differentiation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0009267 |
cellular response to starvation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0008134 |
transcription factor binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0008134 |
transcription factor binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0007520 |
myoblast fusion |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0007519 |
skeletal muscle tissue development |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:97252 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0007519 |
skeletal muscle tissue development |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:94909 |
P |
results_in_development_of:(EMAPA:17701) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0007519 |
skeletal muscle tissue development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1857221 |
P |
results_in_development_of:(EMAPA:31858) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0007519 |
skeletal muscle tissue development |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0007519 |
skeletal muscle tissue development |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0007518 |
myoblast fate determination |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0007517 |
muscle organ development |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:97252 |
P |
results_in_development_of:(EMAPA:17743) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0007517 |
muscle organ development |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0006357 |
regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005829 |
cytosol |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
part_of:(CL:0000056)|part_of:(CL:0002372) |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:631429 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003682 |
chromatin binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003682 |
chromatin binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_direct_input:(MGI:MGI:97276) |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_participant:(MGI:MGI:109617) |
Seeded From UniProt |
complete | ||
enables |
GO:0001228 |
DNA-binding transcription activator activity, RNA polymerase II-specific |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
|
Seeded From UniProt |
complete | ||
enables |
GO:0001228 |
DNA-binding transcription activator activity, RNA polymerase II-specific |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_regulation_target:(MGI:MGI:1919580) |
Seeded From UniProt |
complete | ||
enables |
GO:0001228 |
DNA-binding transcription activator activity, RNA polymerase II-specific |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0000977 |
RNA polymerase II regulatory region sequence-specific DNA binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0000381 |
regulation of alternative mRNA splicing, via spliceosome |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0000381 |
regulation of alternative mRNA splicing, via spliceosome |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
regulates_o_occurs_in:(CL:0000057) |
Seeded From UniProt |
complete | ||
involved_in |
GO:1901741 |
positive regulation of myoblast fusion |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15172 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0051149 |
positive regulation of muscle cell differentiation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15172 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15172 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0043484 |
regulation of RNA splicing |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15172 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0035257 |
nuclear hormone receptor binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15172 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0016604 |
nuclear body |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15172 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0014904 |
myotube cell development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15172 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005829 |
cytosol |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15172 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15172 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0001228 |
DNA-binding transcription activator activity, RNA polymerase II-specific |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15172 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000977 |
RNA polymerase II regulatory region sequence-specific DNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P15172 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007517 |
muscle organ development |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0046983 |
protein dimerization activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005654 |
nucleoplasm |
Reactome:R-MMU-448949 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
C |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0007519 |
skeletal muscle tissue development |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0000981 |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007275 |
multicellular organism development |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007517 |
muscle organ development |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0030154 |
cell differentiation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Busanello, A et al. (2012) MyoD regulates p57kip2 expression by interacting with a distant cis-element and modifying a higher order chromatin structure. Nucleic Acids Res. 40 8266-75 PubMed GONUTS page
- ↑ 2.0 2.1 Grifone, R et al. (2014) The RNA-binding protein Rbm24 is transiently expressed in myoblasts and is required for myogenic differentiation during vertebrate development. Mech. Dev. 134 1-15 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 Wilson, EM & Rotwein, P (2006) Control of MyoD function during initiation of muscle differentiation by an autocrine signaling pathway activated by insulin-like growth factor-II. J. Biol. Chem. 281 29962-71 PubMed GONUTS page
- ↑ Giacinti, C et al. (2006) MyoD recruits the cdk9/cyclin T2 complex on myogenic-genes regulatory regions. J. Cell. Physiol. 206 807-13 PubMed GONUTS page
- ↑ Simone, C et al. (2002) Activation of MyoD-dependent transcription by cdk9/cyclin T2. Oncogene 21 4137-48 PubMed GONUTS page
- ↑ Wang, DZ et al. (2001) The Mef2c gene is a direct transcriptional target of myogenic bHLH and MEF2 proteins during skeletal muscle development. Development 128 4623-33 PubMed GONUTS page
- ↑ 7.0 7.1 Choi, J et al. (2010) Histone demethylase LSD1 is required to induce skeletal muscle differentiation by regulating myogenic factors. Biochem. Biophys. Res. Commun. 401 327-32 PubMed GONUTS page
- ↑ 8.0 8.1 8.2 8.3 8.4 8.5 Blais, A et al. (2005) An initial blueprint for myogenic differentiation. Genes Dev. 19 553-69 PubMed GONUTS page
- ↑ 9.0 9.1 Al Madhoun, AS et al. (2011) Skeletal myosin light chain kinase regulates skeletal myogenesis by phosphorylation of MEF2C. EMBO J. 30 2477-89 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 Murre, C et al. (1989) Interactions between heterologous helix-loop-helix proteins generate complexes that bind specifically to a common DNA sequence. Cell 58 537-44 PubMed GONUTS page
- ↑ Stuelsatz, P et al. (2010) Down-regulation of MyoD by calpain 3 promotes generation of reserve cells in C2C12 myoblasts. J. Biol. Chem. 285 12670-83 PubMed GONUTS page
- ↑ 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 13.0 13.1 13.2 Bean, C et al. (2005) The Ankrd2, Cdkn1c and calcyclin genes are under the control of MyoD during myogenic differentiation. J. Mol. Biol. 349 349-66 PubMed GONUTS page
- ↑ 14.0 14.1 14.2 14.3 14.4 14.5 14.6 14.7 14.8 Lagirand-Cantaloube, J et al. (2009) Inhibition of atrogin-1/MAFbx mediated MyoD proteolysis prevents skeletal muscle atrophy in vivo. PLoS ONE 4 e4973 PubMed GONUTS page
- ↑ Lee, H et al. (2013) MicroRNA-494, upregulated by tumor necrosis factor-α, desensitizes insulin effect in C2C12 muscle cells. PLoS ONE 8 e83471 PubMed GONUTS page
- ↑ 16.0 16.1 Duquet, A et al. (2006) Acetylation is important for MyoD function in adult mice. EMBO Rep. 7 1140-6 PubMed GONUTS page
- ↑ 17.0 17.1 Cole, F et al. (2004) Positive regulation of myogenic bHLH factors and skeletal muscle development by the cell surface receptor CDO. Dev. Cell 7 843-54 PubMed GONUTS page
- ↑ 18.0 18.1 18.2 18.3 Daou, N et al. (2013) A new role for the calcineurin/NFAT pathway in neonatal myosin heavy chain expression via the NFATc2/MyoD complex during mouse myogenesis. Development 140 4914-25 PubMed GONUTS page
- ↑ Eom, GH et al. (2011) Histone methyltransferase SETD3 regulates muscle differentiation. J. Biol. Chem. 286 34733-42 PubMed GONUTS page
- ↑ 20.0 20.1 Armand, AS et al. (2008) Cooperative synergy between NFAT and MyoD regulates myogenin expression and myogenesis. J. Biol. Chem. 283 29004-10 PubMed GONUTS page
- ↑ Micheli, L et al. (2005) PC4 coactivates MyoD by relieving the histone deacetylase 4-mediated inhibition of myocyte enhancer factor 2C. Mol. Cell. Biol. 25 2242-59 PubMed GONUTS page
- ↑ 22.0 22.1 22.2 Yeung, F et al. (2012) Myh7b/miR-499 gene expression is transcriptionally regulated by MRFs and Eos. Nucleic Acids Res. 40 7303-18 PubMed GONUTS page
- ↑ Engert, JC et al. (1995) Activation of a muscle-specific enhancer by the Ski proto-oncogene. Nucleic Acids Res. 23 2988-94 PubMed GONUTS page
- ↑ 24.0 24.1 Anderson, DM et al. (2015) A micropeptide encoded by a putative long noncoding RNA regulates muscle performance. Cell 160 595-606 PubMed GONUTS page
- ↑ Long, X et al. (2007) Myocardin is a bifunctional switch for smooth versus skeletal muscle differentiation. Proc. Natl. Acad. Sci. U.S.A. 104 16570-5 PubMed GONUTS page
- ↑ Hawke, TJ et al. (2007) Xin, an actin binding protein, is expressed within muscle satellite cells and newly regenerated skeletal muscle fibers. Am. J. Physiol., Cell Physiol. 293 C1636-44 PubMed GONUTS page
- ↑ 27.0 27.1 27.2 27.3 27.4 Meech, R et al. (2003) The homeodomain protein Barx2 promotes myogenic differentiation and is regulated by myogenic regulatory factors. J. Biol. Chem. 278 8269-78 PubMed GONUTS page
- ↑ Davie, JK et al. (2007) Target gene selectivity of the myogenic basic helix-loop-helix transcription factor myogenin in embryonic muscle. Dev. Biol. 311 650-64 PubMed GONUTS page
- ↑ Kang, JS et al. (2004) Netrins and neogenin promote myotube formation. J. Cell Biol. 167 493-504 PubMed GONUTS page
- ↑ Schmidt, K et al. (2003) Sox8 is a specific marker for muscle satellite cells and inhibits myogenesis. J. Biol. Chem. 278 29769-75 PubMed GONUTS page
- ↑ 31.0 31.1 Ge, K et al. (2002) Transcription coactivator TRAP220 is required for PPAR gamma 2-stimulated adipogenesis. Nature 417 563-7 PubMed GONUTS page
- ↑ Rajan, S et al. (2012) Analysis of early C2C12 myogenesis identifies stably and differentially expressed transcriptional regulators whose knock-down inhibits myoblast differentiation. Physiol. Genomics 44 183-97 PubMed GONUTS page
- ↑ Millay, DP et al. (2014) Myomaker is essential for muscle regeneration. Genes Dev. 28 1641-6 PubMed GONUTS page
- ↑ Castets, P et al. (2011) Satellite cell loss and impaired muscle regeneration in selenoprotein N deficiency. Hum. Mol. Genet. 20 694-704 PubMed GONUTS page
- ↑ Dyson, PJ et al. (1992) Mapping of the genes encoding tum- transplantation antigens P91A, P35B, and P198. Immunogenetics 35 316-23 PubMed GONUTS page
- ↑ Kong, Y et al. (1997) Muscle LIM protein promotes myogenesis by enhancing the activity of MyoD. Mol. Cell. Biol. 17 4750-60 PubMed GONUTS page
- ↑ Rudnicki, MA et al. (1993) MyoD or Myf-5 is required for the formation of skeletal muscle. Cell 75 1351-9 PubMed GONUTS page
- ↑ Inanlou, MR & Kablar, B (2003) Abnormal development of the diaphragm in mdx:MyoD-/-(9th) embryos leads to pulmonary hypoplasia. Int. J. Dev. Biol. 47 363-71 PubMed GONUTS page
- ↑ Sambasivan, R et al. (2009) Distinct regulatory cascades govern extraocular and pharyngeal arch muscle progenitor cell fates. Dev. Cell 16 810-21 PubMed GONUTS page
- ↑ Günther, S et al. (2004) VITO-1 is an essential cofactor of TEF1-dependent muscle-specific gene regulation. Nucleic Acids Res. 32 791-802 PubMed GONUTS page
- ↑ Brent, AE et al. (2005) Genetic analysis of interactions between the somitic muscle, cartilage and tendon cell lineages during mouse development. Development 132 515-28 PubMed GONUTS page
- ↑ Lee, H et al. (2004) MSX1 cooperates with histone H1b for inhibition of transcription and myogenesis. Science 304 1675-8 PubMed GONUTS page
- ↑ 43.0 43.1 Nishiyama, A et al. (2009) Uncovering early response of gene regulatory networks in ESCs by systematic induction of transcription factors. Cell Stem Cell 5 420-33 PubMed GONUTS page
- ↑ Cheung, TH et al. (2012) Maintenance of muscle stem-cell quiescence by microRNA-489. Nature 482 524-8 PubMed GONUTS page
- ↑ Holst, D et al. (2003) Roles of peroxisome proliferator-activated receptors delta and gamma in myoblast transdifferentiation. Exp. Cell Res. 288 168-76 PubMed GONUTS page
- ↑ Liu, D et al. (2001) TGF-beta inhibits muscle differentiation through functional repression of myogenic transcription factors by Smad3. Genes Dev. 15 2950-66 PubMed GONUTS page
- ↑ Rahib, L et al. (2009) Transcriptomic and network component analysis of glycerol kinase in skeletal muscle using a mouse model of glycerol kinase deficiency. Mol. Genet. Metab. 96 106-12 PubMed GONUTS page
- ↑ Bowlin, KM et al. () Kbtbd5 is regulated by MyoD and restricted to the myogenic lineage. Differentiation 86 184-91 PubMed GONUTS page
- ↑ 49.0 49.1 Ichida, M et al. (1998) MyoD is indispensable for muscle-specific alternative splicing in mouse mitochondrial ATP synthase gamma-subunit pre-mRNA. J. Biol. Chem. 273 8492-501 PubMed GONUTS page
- ↑ 50.0 50.1 50.2 Weintraub, H et al. (1991) The myoD gene family: nodal point during specification of the muscle cell lineage. Science 251 761-6 PubMed GONUTS page
c
- GO:0055007 ! cardiac muscle cell differentiation
- GO:0009267 ! cellular response to starvation
- GO:0071453 ! cellular response to oxygen levels
- GO:0071385 ! cellular response to glucocorticoid stimulus
- GO:0071356 ! cellular response to tumor necrosis factor
- GO:0071392 ! cellular response to estradiol stimulus
- GO:0030154 ! cell differentiation
- Chordata
- GO:0003682 ! chromatin binding
- GO:0031490 ! chromatin DNA binding
- Craniata
- GO:0005737 ! cytoplasm
- GO:0005829 ! cytosol
d
e
g
m
- Mammalia
- Metazoa
- GO:0007275 ! multicellular organism development
- Muridae
- Murinae
- Muroidea
- Mus
- GO:0007517 ! muscle organ development
- Mus musculus
- GO:0045445 ! myoblast differentiation
- GO:0007518 ! myoblast fate determination
- GO:0007520 ! myoblast fusion
- GO:0030016 ! myofibril
- GO:0014904 ! myotube cell development
- GO:0014908 ! myotube differentiation involved in skeletal muscle regeneration
- GO:0014902 ! myotube differentiation
n
p
- GO:1905382 ! positive regulation of snRNA transcription by RNA polymerase II
- GO:0045893 ! positive regulation of DNA-templated transcription
- GO:0043415 ! positive regulation of skeletal muscle tissue regeneration
- GO:0045663 ! positive regulation of myoblast differentiation
- GO:0048743 ! positive regulation of skeletal muscle fiber development
- GO:0045944 ! positive regulation of transcription by RNA polymerase II
- GO:0051149 ! positive regulation of muscle cell differentiation
- GO:1901741 ! positive regulation of myoblast fusion
- GO:1990841 ! promoter-specific chromatin binding
- GO:0046983 ! protein dimerization activity
- GO:0046982 ! protein heterodimerization activity
r
- GO:0010468 ! regulation of gene expression
- GO:0006355 ! regulation of DNA-templated transcription
- GO:0000381 ! regulation of alternative mRNA splicing, via spliceosome
- GO:0006357 ! regulation of transcription by RNA polymerase II
- GO:0043484 ! regulation of RNA splicing
- GO:0000977 ! RNA polymerase II transcription regulatory region sequence-specific DNA binding
- GO:0000978 ! RNA polymerase II cis-regulatory region sequence-specific DNA binding
- Rodentia
s
- Sciurognathi
- GO:0043565 ! sequence-specific DNA binding
- GO:0035914 ! skeletal muscle cell differentiation
- GO:0048741 ! skeletal muscle fiber development
- GO:0043503 ! skeletal muscle fiber adaptation
- GO:0043403 ! skeletal muscle tissue regeneration
- GO:0007519 ! skeletal muscle tissue development
- GO:0051146 ! striated muscle cell differentiation
t