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MOUSE:BBC3

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Species (Taxon ID) Mus musculus (Mouse). (10090)
Gene Name(s) Bbc3 (synonyms: Puma)
Protein Name(s) Bcl-2-binding component 3

p53 up-regulated modulator of apoptosis

External Links
UniProt Q99ML1
EMBL AF332560
BC044782
BC060370
CCDS CCDS20847.1
RefSeq NP_573497.1
XP_006539640.1
XP_006539641.1
XP_006539642.1
XP_006539643.1
XP_006539644.1
XP_006539645.1
UniGene Mm.7660
PDB 2ROC
2VOF
PDBsum 2ROC
2VOF
ProteinModelPortal Q99ML1
SMR Q99ML1
BioGrid 228430
DIP DIP-29805N
IntAct Q99ML1
PhosphoSite Q99ML1
MaxQB Q99ML1
PRIDE Q99ML1
Ensembl ENSMUST00000002152
GeneID 170770
KEGG mmu:170770
UCSC uc009fho.2
CTD 27113
MGI MGI:2181667
eggNOG NOG39678
GeneTree ENSGT00390000002767
HOGENOM HOG000060256
HOVERGEN HBG050671
InParanoid Q99ML1
KO K10132
OMA CEPGLPA
OrthoDB EOG74FF2T
PhylomeDB Q99ML1
TreeFam TF338776
EvolutionaryTrace Q99ML1
NextBio 370391
PRO PR:Q99ML1
Proteomes UP000000589
Bgee Q99ML1
CleanEx MM_BBC3
ExpressionAtlas Q99ML1
Genevestigator Q99ML1
GO GO:0005740
GO:0005739
GO:0006919
GO:0097190
GO:0006974
GO:0071479
GO:0008340
GO:0097194
GO:0072332
GO:0042771
GO:0070059
GO:0030308
GO:0045926
GO:0043065
GO:2001056
GO:0043525
GO:1900740
GO:0070245
GO:0001836
GO:0034976
GO:1901998

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0043065

positive regulation of apoptosis

PMID:20818388[1]

ECO:0000315

P

Puma-deficiency rescued the atrophy of testes, and prevented the depletion of adult stem cells in the bone marrow, testes and brain of p53TSD/– mice (Figs 3a, b and 5d, f and Supplementary Information, Fig. S4).

complete

GO:0042771

DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis

PMID:20818388[1]

ECO:0000315

P

Consistent with the critical roles of Puma in p53-dependent apoptosis, The partial rescue of thymocytes by Puma-deficiency is probably due to the increased expression of other p53-target genes such as p21 and Bax in the thymus of p53TSD/–Puma–/– mice (Fig. 5j).

complete

GO:0008285

negative regulation of cell proliferation

PMID:20818388[1]

ECO:0000315

P

Four-month-old p53TSD/–Puma–/– mice were phenotypically similar to wild-type mice (Fig. 5a). p53TSD/–Puma–/– mice are also similar to wild-type mice in growth rate (Fig. 5b)

complete

GO:0090343

positive regulation of cell aging

PMID:20818388[1]

ECO:0000315

P

All p53TSD/–Puma–/– mice survived longer than 6 weeks of age, whereas all p53TSD/– mice died (Fig. 5c).

complete

GO:0071865

regulation of apoptosis in bone marrow

PMID:20818388[1]

ECO:0000315

P

Puma-deficiency rescued the atrophy of testes, and prevented the depletion of adult stem cells in the bone marrow, testes and brain of p53TSD/– mice (Figs 3a, b and 5d, f and Supplementary Information, Fig. S4).

Note: a new more specific term (Positive regulation of apoptosis in haematopoietic stem cells) is suggested.

complete

GO:0048133

male germ-line stem cell division

PMID:20818388[1]

ECO:0000315

P

Puma-deficiency rescued the atrophy of testes, and prevented the depletion of adult stem cells in the bone marrow, testes and brain of p53TSD/– mice (Figs 3a, b and 5d, f and Supplementary Information, Fig. S4).

Note: a new more specific term (Negative regulation of male germ-line stem cell division) is suggested

complete

GO:2000178

negative regulation of neural precursor cell proliferation

PMID:20818388[1]

ECO:0000315

P

Puma-deficiency rescued the atrophy of testes, and prevented the depletion of adult stem cells in the bone marrow, testes and brain of p53TSD/– mice (Figs 3a, b and 5d, f and Supplementary Information, Fig. S4).

complete

GO:0070245

positive regulation of thymocyte apoptosis

PMID:20818388[1]

ECO:0000315

P

Puma-deficiency also prevented anaemia and partially rescued the thymocyte-reduction phenotype in p53TSD/– mice (Fig. 5e and Supplementary Information, Fig. S4d).

complete

GO:0050680

negative regulation of epithelial cell proliferation

PMID:20818388[1]

ECO:0000315

P

Figure S6 Apoptosis is significantly increased in the crypt of small intestine of p53TSD/- mice, but suppressed to normal levels by Puma-deficiency.

complete

involved_in

GO:2001244

positive regulation of intrinsic apoptotic signaling pathway

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9BXH1

P

Seeded From UniProt

complete

involved_in

GO:2001244

positive regulation of intrinsic apoptotic signaling pathway

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q80ZG6

P

Seeded From UniProt

complete

involved_in

GO:0070059

intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress

PMID:16407291[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0070245

positive regulation of thymocyte apoptotic process

PMID:20818388[1]

ECO:0000316

genetic interaction evidence used in manual assertion

UniProtKB:P02340

P

Seeded From UniProt

complete

involved_in

GO:0008340

determination of adult lifespan

PMID:20818388[1]

ECO:0000316

genetic interaction evidence used in manual assertion

UniProtKB:P02340

P

Seeded From UniProt

complete

involved_in

GO:0006974

cellular response to DNA damage stimulus

PMID:20818388[1]

ECO:0000316

genetic interaction evidence used in manual assertion

UniProtKB:P02340

P

Seeded From UniProt

complete

involved_in

GO:2001056

positive regulation of cysteine-type endopeptidase activity

PMID:21159964[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:2001056

positive regulation of cysteine-type endopeptidase activity

PMID:22761832[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0097194

execution phase of apoptosis

PMID:11463391[5]

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9BXH1

P

Seeded From UniProt

complete

involved_in

GO:0070059

intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress

PMID:21159964[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0070059

intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress

PMID:22761832[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045926

negative regulation of growth

PMID:11463391[5]

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9BXH1

P

Seeded From UniProt

complete

involved_in

GO:0043525

positive regulation of neuron apoptotic process

PMID:21159964[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0043525

positive regulation of neuron apoptotic process

PMID:22761832[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0034976

response to endoplasmic reticulum stress

PMID:21159964[3]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006919

activation of cysteine-type endopeptidase activity involved in apoptotic process

PMID:11463391[5]

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9BXH1

P

Seeded From UniProt

complete

part_of

GO:0005739

mitochondrion

PMID:11463391[5]

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9BXH1

C

Seeded From UniProt

complete

involved_in

GO:0001836

release of cytochrome c from mitochondria

PMID:11463391[5]

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9BXH1

P

Seeded From UniProt

complete

involved_in

GO:2001056

positive regulation of cysteine-type endopeptidase activity

PMID:21873635[6]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:2181667
PANTHER:PTN002008808

P

Seeded From UniProt

complete

involved_in

GO:1900740

positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway

PMID:21873635[6]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:2181667
PANTHER:PTN002008808
UniProtKB:Q96PG8

P

Seeded From UniProt

complete

involved_in

GO:0097194

execution phase of apoptosis

PMID:21873635[6]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN002008808
UniProtKB:Q96PG8

P

Seeded From UniProt

complete

involved_in

GO:0090200

positive regulation of release of cytochrome c from mitochondria

PMID:21873635[6]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN002008808
UniProtKB:Q96PG8

P

Seeded From UniProt

complete

involved_in

GO:0070059

intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress

PMID:21873635[6]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:2181667
PANTHER:PTN002008808
UniProtKB:Q96PG8

P

Seeded From UniProt

complete

involved_in

GO:0043065

positive regulation of apoptotic process

PMID:21873635[6]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:2181667
PANTHER:PTN002008808

P

Seeded From UniProt

complete

involved_in

GO:0006919

activation of cysteine-type endopeptidase activity involved in apoptotic process

PMID:21873635[6]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN002008808
UniProtKB:Q96PG8

P

Seeded From UniProt

complete

part_of

GO:0005739

mitochondrion

PMID:21873635[6]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN002008808
RGD:631434
UniProtKB:Q96PG8

C

Seeded From UniProt

complete

involved_in

GO:0001836

release of cytochrome c from mitochondria

PMID:21873635[6]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN002008808
UniProtKB:Q96PG8

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:2001244

positive regulation of intrinsic apoptotic signaling pathway

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q96PG8

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:2001244

positive regulation of intrinsic apoptotic signaling pathway

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:631434

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:1901998

toxin transport

PMID:23716698[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:1900740

positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway

PMID:16705087[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2681654

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:1900740

positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q96PG8

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0097194

execution phase of apoptosis

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9BXH1

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0097194

execution phase of apoptosis

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q96PG8

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0097190

apoptotic signaling pathway

PMID:11572983[9]

ECO:0000266

sequence orthology evidence used in manual assertion

EMBL:U82987

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0097190

apoptotic signaling pathway

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9BXH1

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0097190

apoptotic signaling pathway

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q96PG8

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0090200

positive regulation of release of cytochrome c from mitochondria

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q96PG8

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0072332

intrinsic apoptotic signaling pathway by p53 class mediator

PMID:11463391[5]

ECO:0000266

sequence orthology evidence used in manual assertion

EMBL:AF322558

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0071479

cellular response to ionizing radiation

PMID:16286009[10]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1096393
MGI:MGI:98834

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0070059

intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q96PG8

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0051209

release of sequestered calcium ion into cytosol

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q96PG8

P

Seeded From UniProt

complete

enables

GO:0051117

ATPase binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q96PG8

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045926

negative regulation of growth

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q96PG8

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0043065

positive regulation of apoptotic process

PMID:16832056[11]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2681654

P

regulates_o_occurs_in:(CL:0000084)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0043065

positive regulation of apoptotic process

PMID:14500851[12]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2681654

P

regulates_o_occurs_in:(CL:0000057)|regulates_o_occurs_in:(CL:0000542)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0042771

intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator

PMID:16151013[13]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2681654

P

occurs_in:(CL:0000057)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0034976

response to endoplasmic reticulum stress

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q96PG8

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0032471

negative regulation of endoplasmic reticulum calcium ion concentration

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q96PG8

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0032464

positive regulation of protein homooligomerization

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q96PG8

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0030308

negative regulation of cell growth

PMID:11463391[5]

ECO:0000266

sequence orthology evidence used in manual assertion

EMBL:AF332558

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006919

activation of cysteine-type endopeptidase activity involved in apoptotic process

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q96PG8

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006915

apoptotic process

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q96PG8

P

Seeded From UniProt

complete

colocalizes_with

GO:0005764

lysosome

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q96PG8

C

Seeded From UniProt

complete

part_of

GO:0005740

mitochondrial envelope

PMID:11463391[5]

ECO:0000266

sequence orthology evidence used in manual assertion

EMBL:AF332558

C

Seeded From UniProt

complete

part_of

GO:0005739

mitochondrion

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q96PG8

C

Seeded From UniProt

complete

part_of

GO:0005739

mitochondrion

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:631434

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001836

release of cytochrome c from mitochondria

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q96PG8

P

Seeded From UniProt

complete

part_of

GO:0005783

endoplasmic reticulum

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0032471

C

Seeded From UniProt

complete

part_of

GO:0005739

mitochondrion

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR031661

C

Seeded From UniProt

complete

involved_in

GO:0043065

positive regulation of apoptotic process

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR031661

P

Seeded From UniProt

complete

involved_in

GO:0090200

positive regulation of release of cytochrome c from mitochondria

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR031661

P

Seeded From UniProt

complete

involved_in

GO:0097193

intrinsic apoptotic signaling pathway

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR031661

P

Seeded From UniProt

complete

part_of

GO:0005739

mitochondrion

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0496
UniProtKB-SubCell:SL-0173

C

Seeded From UniProt

complete

involved_in

GO:0006915

apoptotic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0053

P

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 Liu, D et al. (2010) Puma is required for p53-induced depletion of adult stem cells. Nat. Cell Biol. 12 993-8 PubMed GONUTS page
  2. Li, J et al. (2006) Endoplasmic reticulum stress-induced apoptosis: multiple pathways and activation of p53-up-regulated modulator of apoptosis (PUMA) and NOXA by p53. J. Biol. Chem. 281 7260-70 PubMed GONUTS page
  3. 3.0 3.1 3.2 3.3 Galehdar, Z et al. (2010) Neuronal apoptosis induced by endoplasmic reticulum stress is regulated by ATF4-CHOP-mediated induction of the Bcl-2 homology 3-only member PUMA. J. Neurosci. 30 16938-48 PubMed GONUTS page
  4. 4.0 4.1 4.2 Ghosh, AP et al. (2012) CHOP potentially co-operates with FOXO3a in neuronal cells to regulate PUMA and BIM expression in response to ER stress. PLoS ONE 7 e39586 PubMed GONUTS page
  5. 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 Yu, J et al. (2001) PUMA induces the rapid apoptosis of colorectal cancer cells. Mol. Cell 7 673-82 PubMed GONUTS page
  6. 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  7. Slater, LH et al. (2013) CCT chaperonin complex is required for efficient delivery of anthrax toxin into the cytosol of host cells. Proc. Natl. Acad. Sci. U.S.A. 110 9932-7 PubMed GONUTS page
  8. Ekert, PG et al. (2006) Cell death provoked by loss of interleukin-3 signaling is independent of Bad, Bim, and PI3 kinase, but depends in part on Puma. Blood 108 1461-8 PubMed GONUTS page
  9. Han, J et al. (2001) Expression of bbc3, a pro-apoptotic BH3-only gene, is regulated by diverse cell death and survival signals. Proc. Natl. Acad. Sci. U.S.A. 98 11318-23 PubMed GONUTS page
  10. Wu, WS et al. (2005) Slug antagonizes p53-mediated apoptosis of hematopoietic progenitors by repressing puma. Cell 123 641-53 PubMed GONUTS page
  11. Bauer, A et al. (2006) The NF-kappaB regulator Bcl-3 and the BH3-only proteins Bim and Puma control the death of activated T cells. Proc. Natl. Acad. Sci. U.S.A. 103 10979-84 PubMed GONUTS page
  12. Villunger, A et al. (2003) p53- and drug-induced apoptotic responses mediated by BH3-only proteins puma and noxa. Science 302 1036-8 PubMed GONUTS page
  13. Chipuk, JE et al. (2005) PUMA couples the nuclear and cytoplasmic proapoptotic function of p53. Science 309 1732-5 PubMed GONUTS page