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MOUSE:BBC3
Contents
Species (Taxon ID) | Mus musculus (Mouse). (10090) | |
Gene Name(s) | Bbc3 (synonyms: Puma) | |
Protein Name(s) | Bcl-2-binding component 3
p53 up-regulated modulator of apoptosis | |
External Links | ||
UniProt | Q99ML1 | |
EMBL | AF332560 BC044782 BC060370 | |
CCDS | CCDS20847.1 | |
RefSeq | NP_573497.1 XP_006539640.1 XP_006539641.1 XP_006539642.1 XP_006539643.1 XP_006539644.1 XP_006539645.1 | |
UniGene | Mm.7660 | |
PDB | 2ROC 2VOF | |
PDBsum | 2ROC 2VOF | |
ProteinModelPortal | Q99ML1 | |
SMR | Q99ML1 | |
BioGrid | 228430 | |
DIP | DIP-29805N | |
IntAct | Q99ML1 | |
PhosphoSite | Q99ML1 | |
MaxQB | Q99ML1 | |
PRIDE | Q99ML1 | |
Ensembl | ENSMUST00000002152 | |
GeneID | 170770 | |
KEGG | mmu:170770 | |
UCSC | uc009fho.2 | |
CTD | 27113 | |
MGI | MGI:2181667 | |
eggNOG | NOG39678 | |
GeneTree | ENSGT00390000002767 | |
HOGENOM | HOG000060256 | |
HOVERGEN | HBG050671 | |
InParanoid | Q99ML1 | |
KO | K10132 | |
OMA | CEPGLPA | |
OrthoDB | EOG74FF2T | |
PhylomeDB | Q99ML1 | |
TreeFam | TF338776 | |
EvolutionaryTrace | Q99ML1 | |
NextBio | 370391 | |
PRO | PR:Q99ML1 | |
Proteomes | UP000000589 | |
Bgee | Q99ML1 | |
CleanEx | MM_BBC3 | |
ExpressionAtlas | Q99ML1 | |
Genevestigator | Q99ML1 | |
GO | GO:0005740 GO:0005739 GO:0006919 GO:0097190 GO:0006974 GO:0071479 GO:0008340 GO:0097194 GO:0072332 GO:0042771 GO:0070059 GO:0030308 GO:0045926 GO:0043065 GO:2001056 GO:0043525 GO:1900740 GO:0070245 GO:0001836 GO:0034976 GO:1901998 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0043065 |
positive regulation of apoptosis |
ECO:0000315 |
P |
Puma-deficiency rescued the atrophy of testes, and prevented the depletion of adult stem cells in the bone marrow, testes and brain of p53TSD/– mice (Figs 3a, b and 5d, f and Supplementary Information, Fig. S4). |
complete | |||||
GO:0042771 |
DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis |
ECO:0000315 |
P |
Consistent with the critical roles of Puma in p53-dependent apoptosis, The partial rescue of thymocytes by Puma-deficiency is probably due to the increased expression of other p53-target genes such as p21 and Bax in the thymus of p53TSD/–Puma–/– mice (Fig. 5j). |
complete | |||||
GO:0008285 |
negative regulation of cell proliferation |
ECO:0000315 |
P |
Four-month-old p53TSD/–Puma–/– mice were phenotypically similar to wild-type mice (Fig. 5a). p53TSD/–Puma–/– mice are also similar to wild-type mice in growth rate (Fig. 5b) |
complete | |||||
GO:0090343 |
positive regulation of cell aging |
ECO:0000315 |
P |
All p53TSD/–Puma–/– mice survived longer than 6 weeks of age, whereas all p53TSD/– mice died (Fig. 5c). |
complete | |||||
GO:0071865 |
regulation of apoptosis in bone marrow |
ECO:0000315 |
P |
Puma-deficiency rescued the atrophy of testes, and prevented the depletion of adult stem cells in the bone marrow, testes and brain of p53TSD/– mice (Figs 3a, b and 5d, f and Supplementary Information, Fig. S4). Note: a new more specific term (Positive regulation of apoptosis in haematopoietic stem cells) is suggested. |
complete | |||||
GO:0048133 |
male germ-line stem cell division |
ECO:0000315 |
P |
Puma-deficiency rescued the atrophy of testes, and prevented the depletion of adult stem cells in the bone marrow, testes and brain of p53TSD/– mice (Figs 3a, b and 5d, f and Supplementary Information, Fig. S4). Note: a new more specific term (Negative regulation of male germ-line stem cell division) is suggested |
complete | |||||
GO:2000178 |
negative regulation of neural precursor cell proliferation |
ECO:0000315 |
P |
Puma-deficiency rescued the atrophy of testes, and prevented the depletion of adult stem cells in the bone marrow, testes and brain of p53TSD/– mice (Figs 3a, b and 5d, f and Supplementary Information, Fig. S4). |
complete | |||||
GO:0070245 |
positive regulation of thymocyte apoptosis |
ECO:0000315 |
P |
Puma-deficiency also prevented anaemia and partially rescued the thymocyte-reduction phenotype in p53TSD/– mice (Fig. 5e and Supplementary Information, Fig. S4d). |
complete | |||||
GO:0050680 |
negative regulation of epithelial cell proliferation |
ECO:0000315 |
P |
Figure S6 Apoptosis is significantly increased in the crypt of small intestine of p53TSD/- mice, but suppressed to normal levels by Puma-deficiency. |
complete | |||||
involved_in |
GO:2001244 |
positive regulation of intrinsic apoptotic signaling pathway |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:2001244 |
positive regulation of intrinsic apoptotic signaling pathway |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0070059 |
intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0070245 |
positive regulation of thymocyte apoptotic process |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0008340 |
determination of adult lifespan |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:2001056 |
positive regulation of cysteine-type endopeptidase activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:2001056 |
positive regulation of cysteine-type endopeptidase activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0097194 |
execution phase of apoptosis |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0070059 |
intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0070059 |
intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045926 |
negative regulation of growth |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0043525 |
positive regulation of neuron apoptotic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0043525 |
positive regulation of neuron apoptotic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0034976 |
response to endoplasmic reticulum stress |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006919 |
activation of cysteine-type endopeptidase activity involved in apoptotic process |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005739 |
mitochondrion |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0001836 |
release of cytochrome c from mitochondria |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:2001056 |
positive regulation of cysteine-type endopeptidase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2181667 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:1900740 |
positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2181667 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0097194 |
execution phase of apoptosis |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002008808 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0090200 |
positive regulation of release of cytochrome c from mitochondria |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002008808 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0070059 |
intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2181667 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0043065 |
positive regulation of apoptotic process |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:2181667 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006919 |
activation of cysteine-type endopeptidase activity involved in apoptotic process |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002008808 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005739 |
mitochondrion |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002008808 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0001836 |
release of cytochrome c from mitochondria |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002008808 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:2001244 |
positive regulation of intrinsic apoptotic signaling pathway |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:2001244 |
positive regulation of intrinsic apoptotic signaling pathway |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:631434 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:1901998 |
toxin transport |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:1900740 |
positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:2681654 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:1900740 |
positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0097194 |
execution phase of apoptosis |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0097194 |
execution phase of apoptosis |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0097190 |
apoptotic signaling pathway |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
EMBL:U82987 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0097190 |
apoptotic signaling pathway |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0097190 |
apoptotic signaling pathway |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0090200 |
positive regulation of release of cytochrome c from mitochondria |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0072332 |
intrinsic apoptotic signaling pathway by p53 class mediator |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
EMBL:AF322558 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0071479 |
cellular response to ionizing radiation |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:1096393 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0070059 |
intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0051209 |
release of sequestered calcium ion into cytosol |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0051117 |
ATPase binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045926 |
negative regulation of growth |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0043065 |
positive regulation of apoptotic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:2681654 |
P |
regulates_o_occurs_in:(CL:0000084) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0043065 |
positive regulation of apoptotic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:2681654 |
P |
regulates_o_occurs_in:(CL:0000057)|regulates_o_occurs_in:(CL:0000542) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0042771 |
intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:2681654 |
P |
occurs_in:(CL:0000057) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0034976 |
response to endoplasmic reticulum stress |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0032471 |
negative regulation of endoplasmic reticulum calcium ion concentration |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0032464 |
positive regulation of protein homooligomerization |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0030308 |
negative regulation of cell growth |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
EMBL:AF332558 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0006919 |
activation of cysteine-type endopeptidase activity involved in apoptotic process |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0006915 |
apoptotic process |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
colocalizes_with |
GO:0005764 |
lysosome |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005740 |
mitochondrial envelope |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
EMBL:AF332558 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005739 |
mitochondrion |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005739 |
mitochondrion |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:631434 |
C |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0001836 |
release of cytochrome c from mitochondria |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005783 |
endoplasmic reticulum |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0032471 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005739 |
mitochondrion |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0043065 |
positive regulation of apoptotic process |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0090200 |
positive regulation of release of cytochrome c from mitochondria |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0097193 |
intrinsic apoptotic signaling pathway |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005739 |
mitochondrion |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006915 |
apoptotic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 Liu, D et al. (2010) Puma is required for p53-induced depletion of adult stem cells. Nat. Cell Biol. 12 993-8 PubMed GONUTS page
- ↑ Li, J et al. (2006) Endoplasmic reticulum stress-induced apoptosis: multiple pathways and activation of p53-up-regulated modulator of apoptosis (PUMA) and NOXA by p53. J. Biol. Chem. 281 7260-70 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 Galehdar, Z et al. (2010) Neuronal apoptosis induced by endoplasmic reticulum stress is regulated by ATF4-CHOP-mediated induction of the Bcl-2 homology 3-only member PUMA. J. Neurosci. 30 16938-48 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 Ghosh, AP et al. (2012) CHOP potentially co-operates with FOXO3a in neuronal cells to regulate PUMA and BIM expression in response to ER stress. PLoS ONE 7 e39586 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 5.7 Yu, J et al. (2001) PUMA induces the rapid apoptosis of colorectal cancer cells. Mol. Cell 7 673-82 PubMed GONUTS page
- ↑ 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Slater, LH et al. (2013) CCT chaperonin complex is required for efficient delivery of anthrax toxin into the cytosol of host cells. Proc. Natl. Acad. Sci. U.S.A. 110 9932-7 PubMed GONUTS page
- ↑ Ekert, PG et al. (2006) Cell death provoked by loss of interleukin-3 signaling is independent of Bad, Bim, and PI3 kinase, but depends in part on Puma. Blood 108 1461-8 PubMed GONUTS page
- ↑ Han, J et al. (2001) Expression of bbc3, a pro-apoptotic BH3-only gene, is regulated by diverse cell death and survival signals. Proc. Natl. Acad. Sci. U.S.A. 98 11318-23 PubMed GONUTS page
- ↑ Wu, WS et al. (2005) Slug antagonizes p53-mediated apoptosis of hematopoietic progenitors by repressing puma. Cell 123 641-53 PubMed GONUTS page
- ↑ Bauer, A et al. (2006) The NF-kappaB regulator Bcl-3 and the BH3-only proteins Bim and Puma control the death of activated T cells. Proc. Natl. Acad. Sci. U.S.A. 103 10979-84 PubMed GONUTS page
- ↑ Villunger, A et al. (2003) p53- and drug-induced apoptotic responses mediated by BH3-only proteins puma and noxa. Science 302 1036-8 PubMed GONUTS page
- ↑ Chipuk, JE et al. (2005) PUMA couples the nuclear and cytoplasmic proapoptotic function of p53. Science 309 1732-5 PubMed GONUTS page
a
e
g
i
- GO:0042771 ! intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
- GO:0070059 ! intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress
- GO:0097193 ! intrinsic apoptotic signaling pathway
- GO:0072332 ! intrinsic apoptotic signaling pathway by p53 class mediator
m
n
- GO:2000178 ! negative regulation of neural precursor cell proliferation
- GO:0032471 ! negative regulation of endoplasmic reticulum calcium ion concentration
- GO:0050680 ! negative regulation of epithelial cell proliferation
- GO:0030308 ! negative regulation of cell growth
- GO:0008285 ! negative regulation of cell population proliferation
- GO:0045926 ! negative regulation of growth
o
- GO:0006919 ! obsolete activation of cysteine-type endopeptidase activity involved in apoptotic process
- GO:1900740 ! obsolete positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway
- GO:0090343 ! obsolete positive regulation of cell aging
- GO:1901998 ! obsolete toxin transport
p
- GO:0043065 ! positive regulation of apoptotic process
- GO:0032464 ! positive regulation of protein homooligomerization
- GO:0090200 ! positive regulation of release of cytochrome c from mitochondria
- GO:0043525 ! positive regulation of neuron apoptotic process
- GO:2001056 ! positive regulation of cysteine-type endopeptidase activity
- GO:2001244 ! positive regulation of intrinsic apoptotic signaling pathway
- GO:0070245 ! positive regulation of thymocyte apoptotic process
r