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HUMAN:NUP98
Contents
Species (Taxon ID) | Homo sapiens (Human). (9606) | |
Gene Name(s) | NUP98 (synonyms: ADAR2) | |
Protein Name(s) | Nuclear pore complex protein Nup98-Nup96
Nuclear pore complex protein Nup98 98 kDa nucleoporin Nucleoporin Nup98 Nup98 Nuclear pore complex protein Nup96 96 kDa nucleoporin Nucleoporin Nup96 Nup96 | |
External Links | ||
UniProt | P52948 | |
EMBL | U41815 AB040538 AF071076 AF071077 AF231130 AC060812 AC090587 BC041136 BC012906 AF116074 BT007349 AL133601 AL137613 | |
CCDS | CCDS31347.1 CCDS41605.1 CCDS41606.1 CCDS7746.1 | |
PIR | T43443 | |
RefSeq | NP_005378.4 NP_057404.2 NP_624357.1 NP_624358.2 XP_005253007.1 | |
UniGene | Hs.524750 | |
PDB | 1KO6 2Q5X 2Q5Y 3MMY 4OWR | |
PDBsum | 1KO6 2Q5X 2Q5Y 3MMY 4OWR | |
ProteinModelPortal | P52948 | |
SMR | P52948 | |
BioGrid | 110982 | |
DIP | DIP-32484N | |
IntAct | P52948 | |
MINT | MINT-121544 | |
MEROPS | S59.001 | |
PhosphoSite | P52948 | |
DMDM | 308153660 | |
MaxQB | P52948 | |
PaxDb | P52948 | |
PRIDE | P52948 | |
DNASU | 4928 | |
Ensembl | ENST00000324932 ENST00000355260 ENST00000359171 ENST00000397004 ENST00000397007 | |
GeneID | 4928 | |
KEGG | hsa:4928 | |
UCSC | uc001lyh.3 uc001lyi.3 uc001lyj.2 uc001lyk.2 | |
CTD | 4928 | |
GeneCards | GC11M003700 | |
HGNC | HGNC:8068 | |
MIM | 601021 | |
neXtProt | NX_P52948 | |
PharmGKB | PA31856 | |
eggNOG | NOG12793 | |
GeneTree | ENSGT00550000074799 | |
HOVERGEN | HBG052702 | |
InParanoid | P52948 | |
KO | K14297 | |
OMA | TSFHEES | |
OrthoDB | EOG77WWBT | |
PhylomeDB | P52948 | |
TreeFam | TF343335 | |
Reactome | REACT_115831 REACT_150425 REACT_150471 REACT_163931 REACT_267668 REACT_6190 REACT_6354 REACT_6804 REACT_682 REACT_7991 REACT_9395 | |
ChiTaRS | NUP98 | |
EvolutionaryTrace | P52948 | |
GeneWiki | NUP98 | |
GenomeRNAi | 4928 | |
NextBio | 18979 | |
PMAP-CutDB | P52948 | |
PRO | PR:P52948 | |
Proteomes | UP000005640 | |
Bgee | P52948 | |
ExpressionAtlas | P52948 | |
Genevestigator | P52948 | |
GO | GO:0005829 GO:0005635 GO:0042405 GO:0031965 GO:0034399 GO:0005643 GO:0044615 GO:0031080 GO:0005654 GO:0042277 GO:0017056 GO:0005215 GO:0005975 GO:0019221 GO:0006260 GO:0015758 GO:0008645 GO:0000278 GO:0007077 GO:0051028 GO:0051292 GO:0006999 GO:0006913 GO:0000059 GO:0010827 GO:0044281 GO:0055085 GO:0016032 | |
Gene3D | 3.30.1610.10 | |
InterPro | IPR021967 IPR007230 | |
Pfam | PF04096 PF12110 | |
SUPFAM | SSF82215 | |
PROSITE | PS51434 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
part_of |
GO:0005635 |
nuclear envelope |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003713 |
transcription coactivator activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0048026 |
positive regulation of mRNA splicing, via spliceosome |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:1990841 |
promoter-specific chromatin binding |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:1990904 |
ribonucleoprotein complex |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003729 |
mRNA binding |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0016604 |
nuclear body |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051292 |
nuclear pore complex assembly |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0044615 |
nuclear pore nuclear basket |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0042405 |
nuclear inclusion body |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0034399 |
nuclear periphery |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0034399 |
nuclear periphery |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0031965 |
nuclear membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0031965 |
nuclear membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0031965 |
nuclear membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0031965 |
nuclear membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0031080 |
nuclear pore outer ring |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0031080 |
nuclear pore outer ring |
ECO:0000303 |
author statement without traceable support used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0017056 |
structural constituent of nuclear pore |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0017056 |
structural constituent of nuclear pore |
ECO:0000303 |
author statement without traceable support used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006999 |
nuclear pore organization |
ECO:0000303 |
author statement without traceable support used in manual assertion |
P |
Seeded From UniProt |
complete | |||
GO:0005654 |
nucleoplasm |
ECO:0000314 |
C |
Human nup98. Figure 3, immunofluorescence spectroscopy confirmed localization to the nucleoplasm. |
complete | |||||
involved_in |
GO:0006260 |
DNA replication |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005643 |
nuclear pore |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005643 |
nuclear pore |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005643 |
nuclear pore |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005643 |
nuclear pore |
ECO:0000303 |
author statement without traceable support used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005635 |
nuclear envelope |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
colocalizes_with |
GO:0000776 |
kinetochore |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0044614 |
nuclear pore cytoplasmic filaments |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000574450 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0034398 |
telomere tethering at nuclear periphery |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000574450 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0017056 |
structural constituent of nuclear pore |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000574450 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0008139 |
nuclear localization sequence binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000574450 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006606 |
protein import into nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0039120 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006405 |
RNA export from nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0039120 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0003723 |
RNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000574450 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000973 |
posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000574450 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0043231 |
intracellular membrane-bounded organelle |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0043657 |
host cell |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0075733 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:1903508 |
positive regulation of nucleic acid-templated transcription |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0003713 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0044615 |
nuclear pore nuclear basket |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P49793 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0042405 |
nuclear inclusion body |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P49793 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0042277 |
peptide binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P49793 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0034399 |
nuclear periphery |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P49793 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0031965 |
nuclear membrane |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P49793 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0008139 |
nuclear localization sequence binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P49793 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006606 |
protein import into nucleus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P49793 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P49793 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005643 |
nuclear pore |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P49793 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005643 |
nuclear pore |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006913 |
nucleocytoplasmic transport |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0017056 |
structural constituent of nuclear pore |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005654 |
nucleoplasm |
PMID:7736573[11] |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
enables |
GO:0005215 |
transporter activity |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006913 |
nucleocytoplasmic transport |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1900034 |
regulation of cellular response to heat |
Reactome:R-HSA-3371453 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0075733 |
intracellular transport of virus |
Reactome:R-HSA-1176059 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0060964 |
regulation of gene silencing by miRNA |
Reactome:R-HSA-5578749 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0019083 |
viral transcription |
Reactome:R-HSA-168325 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0016925 |
protein sumoylation |
Reactome:R-HSA-4655355 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0016032 |
viral process |
Reactome:R-HSA-162599 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006409 |
tRNA export from nucleus |
Reactome:R-HSA-6783483 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006406 |
mRNA export from nucleus |
Reactome:R-HSA-75098 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
P |
Seeded From UniProt |
complete | |
involved_in |
GO:0006110 |
regulation of glycolytic process |
Reactome:R-HSA-170822 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005829 |
cytosol |
Reactome:R-HSA-75098 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
part_of |
GO:0005635 |
nuclear envelope |
Reactome:R-HSA-75098 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0016020 |
membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0015031 |
protein transport |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006508 |
proteolysis |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0016032 |
viral process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005643 |
nuclear pore |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051028 |
mRNA transport |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0008233 |
peptidase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0008236 |
serine-type peptidase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0031965 |
nuclear membrane |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Capitanio, JS et al. (2017) Human Nup98 regulates the localization and activity of DExH/D-box helicase DHX9. Elife 6 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 Krull, S et al. (2004) Nucleoporins as components of the nuclear pore complex core structure and Tpr as the architectural element of the nuclear basket. Mol. Biol. Cell 15 4261-77 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 Frosst, P et al. (2002) Tpr is localized within the nuclear basket of the pore complex and has a role in nuclear protein export. J. Cell Biol. 156 617-30 PubMed GONUTS page
- ↑ 4.0 4.1 Hase, ME & Cordes, VC (2003) Direct interaction with nup153 mediates binding of Tpr to the periphery of the nuclear pore complex. Mol. Biol. Cell 14 1923-40 PubMed GONUTS page
- ↑ Krull, S et al. (2010) Protein Tpr is required for establishing nuclear pore-associated zones of heterochromatin exclusion. EMBO J. 29 1659-73 PubMed GONUTS page
- ↑ Glavy, JS et al. (2007) Cell-cycle-dependent phosphorylation of the nuclear pore Nup107-160 subcomplex. Proc. Natl. Acad. Sci. U.S.A. 104 3811-6 PubMed GONUTS page
- ↑ 7.0 7.1 7.2 Loïodice, I et al. (2004) The entire Nup107-160 complex, including three new members, is targeted as one entity to kinetochores in mitosis. Mol. Biol. Cell 15 3333-44 PubMed GONUTS page
- ↑ 8.0 8.1 8.2 8.3 8.4 Grandi, P et al. (1997) Nup93, a vertebrate homologue of yeast Nic96p, forms a complex with a novel 205-kDa protein and is required for correct nuclear pore assembly. Mol. Biol. Cell 8 2017-38 PubMed GONUTS page
- ↑ Fontoura, BM et al. (1999) A conserved biogenesis pathway for nucleoporins: proteolytic processing of a 186-kilodalton precursor generates Nup98 and the novel nucleoporin, Nup96. J. Cell Biol. 144 1097-112 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 11.0 11.1 Radu, A et al. (1995) The peptide repeat domain of nucleoporin Nup98 functions as a docking site in transport across the nuclear pore complex. Cell 81 215-22 PubMed GONUTS page
i
m
n
- GO:0016604 ! nuclear body
- GO:0005635 ! nuclear envelope
- GO:0042405 ! nuclear inclusion body
- GO:0008139 ! nuclear localization sequence binding
- GO:0031965 ! nuclear membrane
- GO:0034399 ! nuclear periphery
- GO:0044615 ! nuclear pore nuclear basket
- GO:0005643 ! nuclear pore
- GO:0044614 ! nuclear pore cytoplasmic filaments
- GO:0031080 ! nuclear pore outer ring
- GO:0051292 ! nuclear pore complex assembly
- GO:0006999 ! nuclear pore organization
- GO:0006913 ! nucleocytoplasmic transport
- GO:0005654 ! nucleoplasm
- GO:0005634 ! nucleus
p
- GO:0008233 ! peptidase activity
- GO:0042277 ! peptide binding
- GO:0048026 ! positive regulation of mRNA splicing, via spliceosome
- GO:0000973 ! post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery
- Primates
- GO:1990841 ! promoter-specific chromatin binding
- GO:0006606 ! protein import into nucleus
- GO:0016925 ! protein sumoylation
- GO:0015031 ! protein transport
- GO:0006508 ! proteolysis
r
t