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HUMAN:NUP98

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Species (Taxon ID) Homo sapiens (Human). (9606)
Gene Name(s) NUP98 (synonyms: ADAR2)
Protein Name(s) Nuclear pore complex protein Nup98-Nup96

Nuclear pore complex protein Nup98 98 kDa nucleoporin Nucleoporin Nup98 Nup98 Nuclear pore complex protein Nup96 96 kDa nucleoporin Nucleoporin Nup96 Nup96

External Links
UniProt P52948
EMBL U41815
AB040538
AF071076
AF071077
AF231130
AC060812
AC090587
BC041136
BC012906
AF116074
BT007349
AL133601
AL137613
CCDS CCDS31347.1
CCDS41605.1
CCDS41606.1
CCDS7746.1
PIR T43443
RefSeq NP_005378.4
NP_057404.2
NP_624357.1
NP_624358.2
XP_005253007.1
UniGene Hs.524750
PDB 1KO6
2Q5X
2Q5Y
3MMY
4OWR
PDBsum 1KO6
2Q5X
2Q5Y
3MMY
4OWR
ProteinModelPortal P52948
SMR P52948
BioGrid 110982
DIP DIP-32484N
IntAct P52948
MINT MINT-121544
MEROPS S59.001
PhosphoSite P52948
DMDM 308153660
MaxQB P52948
PaxDb P52948
PRIDE P52948
DNASU 4928
Ensembl ENST00000324932
ENST00000355260
ENST00000359171
ENST00000397004
ENST00000397007
GeneID 4928
KEGG hsa:4928
UCSC uc001lyh.3
uc001lyi.3
uc001lyj.2
uc001lyk.2
CTD 4928
GeneCards GC11M003700
HGNC HGNC:8068
MIM 601021
neXtProt NX_P52948
PharmGKB PA31856
eggNOG NOG12793
GeneTree ENSGT00550000074799
HOVERGEN HBG052702
InParanoid P52948
KO K14297
OMA TSFHEES
OrthoDB EOG77WWBT
PhylomeDB P52948
TreeFam TF343335
Reactome REACT_115831
REACT_150425
REACT_150471
REACT_163931
REACT_267668
REACT_6190
REACT_6354
REACT_6804
REACT_682
REACT_7991
REACT_9395
ChiTaRS NUP98
EvolutionaryTrace P52948
GeneWiki NUP98
GenomeRNAi 4928
NextBio 18979
PMAP-CutDB P52948
PRO PR:P52948
Proteomes UP000005640
Bgee P52948
ExpressionAtlas P52948
Genevestigator P52948
GO GO:0005829
GO:0005635
GO:0042405
GO:0031965
GO:0034399
GO:0005643
GO:0044615
GO:0031080
GO:0005654
GO:0042277
GO:0017056
GO:0005215
GO:0005975
GO:0019221
GO:0006260
GO:0015758
GO:0008645
GO:0000278
GO:0007077
GO:0051028
GO:0051292
GO:0006999
GO:0006913
GO:0000059
GO:0010827
GO:0044281
GO:0055085
GO:0016032
Gene3D 3.30.1610.10
InterPro IPR021967
IPR007230
Pfam PF04096
PF12110
SUPFAM SSF82215
PROSITE PS51434

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

part_of

GO:0005635

nuclear envelope

PMID:28221134[1]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0003713

transcription coactivator activity

PMID:28221134[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0048026

positive regulation of mRNA splicing, via spliceosome

PMID:28221134[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:1990841

promoter-specific chromatin binding

PMID:28221134[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:1990904

ribonucleoprotein complex

PMID:28221134[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0003729

mRNA binding

PMID:28221134[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0016604

nuclear body

PMID:28221134[1]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

PMID:28221134[1]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0051292

nuclear pore complex assembly

PMID:15229283[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0044615

nuclear pore nuclear basket

PMID:11839768[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0042405

nuclear inclusion body

PMID:11839768[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0034399

nuclear periphery

PMID:15229283[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0034399

nuclear periphery

PMID:11839768[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0031965

nuclear membrane

PMID:11839768[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0031965

nuclear membrane

PMID:12802065[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0031965

nuclear membrane

PMID:15229283[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0031965

nuclear membrane

PMID:20407419[5]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0031080

nuclear pore outer ring

PMID:17360435[6]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0031080

nuclear pore outer ring

PMID:15146057[7]

ECO:0000303

author statement without traceable support used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0017056

structural constituent of nuclear pore

PMID:15229283[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0017056

structural constituent of nuclear pore

PMID:9348540[8]

ECO:0000303

author statement without traceable support used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0006999

nuclear pore organization

PMID:9348540[8]

ECO:0000303

author statement without traceable support used in manual assertion

P

Seeded From UniProt

complete

GO:0005654

nucleoplasm

PMID:28221134[1]

ECO:0000314

C

Human nup98. Figure 3, immunofluorescence spectroscopy confirmed localization to the nucleoplasm.

complete
CACAO 12411

involved_in

GO:0006260

DNA replication

PMID:9348540[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005643

nuclear pore

PMID:15229283[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005643

nuclear pore

PMID:12802065[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005643

nuclear pore

PMID:9348540[8]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005643

nuclear pore

PMID:10087256[9]

ECO:0000303

author statement without traceable support used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005635

nuclear envelope

PMID:15146057[7]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

colocalizes_with

GO:0000776

kinetochore

PMID:15146057[7]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0044614

nuclear pore cytoplasmic filaments

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000574450
SGD:S000004650

C

Seeded From UniProt

complete

involved_in

GO:0034398

telomere tethering at nuclear periphery

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000574450
SGD:S000003060

P

Seeded From UniProt

complete

enables

GO:0017056

structural constituent of nuclear pore

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000574450
SGD:S000001551
SGD:S000003060
SGD:S000004650
UniProtKB:P52948

F

Seeded From UniProt

complete

enables

GO:0008139

nuclear localization sequence binding

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000574450
RGD:71033

F

Seeded From UniProt

complete

involved_in

GO:0006606

protein import into nucleus

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0039120
PANTHER:PTN000574450
RGD:71033
SGD:S000001551
SGD:S000003060
SGD:S000004650
WB:WBGene00003796

P

Seeded From UniProt

complete

involved_in

GO:0006405

RNA export from nucleus

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0039120
PANTHER:PTN000574450

P

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000574450
SGD:S000003060
WB:WBGene00003796

F

Seeded From UniProt

complete

involved_in

GO:0000973

posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000574450
SGD:S000001551
SGD:S000003060

P

Seeded From UniProt

complete

part_of

GO:0043231

intracellular membrane-bounded organelle

GO_REF:0000052

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000052

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0043657

host cell

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0075733

C

Seeded From UniProt

complete

involved_in

GO:1903508

positive regulation of nucleic acid-templated transcription

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0003713

P

Seeded From UniProt

complete

part_of

GO:0044615

nuclear pore nuclear basket

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P49793
ensembl:ENSRNOP00000027575

C

Seeded From UniProt

complete

part_of

GO:0042405

nuclear inclusion body

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P49793
ensembl:ENSRNOP00000027575

C

Seeded From UniProt

complete

enables

GO:0042277

peptide binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P49793
ensembl:ENSRNOP00000027575

F

Seeded From UniProt

complete

part_of

GO:0034399

nuclear periphery

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P49793
ensembl:ENSRNOP00000027575

C

Seeded From UniProt

complete

part_of

GO:0031965

nuclear membrane

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P49793
ensembl:ENSRNOP00000027575

C

Seeded From UniProt

complete

enables

GO:0008139

nuclear localization sequence binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P49793
ensembl:ENSRNOP00000027575

F

Seeded From UniProt

complete

involved_in

GO:0006606

protein import into nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P49793
ensembl:ENSRNOP00000027575

P

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P49793
ensembl:ENSRNOP00000027575

C

Seeded From UniProt

complete

part_of

GO:0005643

nuclear pore

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P49793
ensembl:ENSRNOP00000027575

C

Seeded From UniProt

complete

part_of

GO:0005643

nuclear pore

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR007230
InterPro:IPR037665

C

Seeded From UniProt

complete

involved_in

GO:0006913

nucleocytoplasmic transport

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR007230

P

Seeded From UniProt

complete

enables

GO:0017056

structural constituent of nuclear pore

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR007230
InterPro:IPR037637

F

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

PMID:7736573[11]
Reactome:R-HSA-2990880

ECO:0000304

author statement supported by traceable reference used in manual assertion


C

Seeded From UniProt

complete

enables

GO:0005215

transporter activity

PMID:7736573[11]

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0006913

nucleocytoplasmic transport

PMID:9348540[8]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:1900034

regulation of cellular response to heat

Reactome:R-HSA-3371453

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0075733

intracellular transport of virus

Reactome:R-HSA-1176059

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0060964

regulation of gene silencing by miRNA

Reactome:R-HSA-5578749

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0019083

viral transcription

Reactome:R-HSA-168325

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0016925

protein sumoylation

Reactome:R-HSA-4655355

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0016032

viral process

Reactome:R-HSA-162599

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006409

tRNA export from nucleus

Reactome:R-HSA-6783483

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006406

mRNA export from nucleus

Reactome:R-HSA-75098
Reactome:R-HSA-75097
Reactome:R-HSA-75096

ECO:0000304

author statement supported by traceable reference used in manual assertion



P

Seeded From UniProt

complete

involved_in

GO:0006110

regulation of glycolytic process

Reactome:R-HSA-170822

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

Reactome:R-HSA-75098
Reactome:R-HSA-75097
Reactome:R-HSA-75096
Reactome:R-HSA-6783483
Reactome:R-HSA-5666169
Reactome:R-HSA-5666160
Reactome:R-HSA-5666129
Reactome:R-HSA-5578744
Reactome:R-HSA-5252041
Reactome:R-HSA-5228523
Reactome:R-HSA-5228508
Reactome:R-HSA-4615987
Reactome:R-HSA-4615872
Reactome:R-HSA-4570493
Reactome:R-HSA-4551679
Reactome:R-HSA-4551649
Reactome:R-HSA-375302
Reactome:R-HSA-3000411
Reactome:R-HSA-3000399
Reactome:R-HSA-3000348
Reactome:R-HSA-2990882
Reactome:R-HSA-2990880
Reactome:R-HSA-2484822
Reactome:R-HSA-2468287
Reactome:R-HSA-2467811
Reactome:R-HSA-2467809
Reactome:R-HSA-192925
Reactome:R-HSA-192627
Reactome:R-HSA-180622
Reactome:R-HSA-170796
Reactome:R-HSA-165047
Reactome:R-HSA-165043
Reactome:R-HSA-1638821
Reactome:R-HSA-1638803
Reactome:R-HSA-141439
Reactome:R-HSA-141431
Reactome:R-HSA-141422
Reactome:R-HSA-141409
Reactome:R-HSA-1176059

ECO:0000304

author statement supported by traceable reference used in manual assertion







































C

Seeded From UniProt

complete

part_of

GO:0005635

nuclear envelope

Reactome:R-HSA-75098
Reactome:R-HSA-75097
Reactome:R-HSA-75096
Reactome:R-HSA-6783483
Reactome:R-HSA-5578744
Reactome:R-HSA-5252041
Reactome:R-HSA-5228523
Reactome:R-HSA-5228508
Reactome:R-HSA-4655355
Reactome:R-HSA-4615987
Reactome:R-HSA-4615872
Reactome:R-HSA-4570493
Reactome:R-HSA-4551679
Reactome:R-HSA-4551649
Reactome:R-HSA-3000411
Reactome:R-HSA-3000399
Reactome:R-HSA-3000348
Reactome:R-HSA-2990882
Reactome:R-HSA-2990880
Reactome:R-HSA-192925
Reactome:R-HSA-192627
Reactome:R-HSA-180622
Reactome:R-HSA-170796
Reactome:R-HSA-165047
Reactome:R-HSA-165043
Reactome:R-HSA-1176059

ECO:0000304

author statement supported by traceable reference used in manual assertion


























C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539

C

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

involved_in

GO:0015031

protein transport

GO_REF:0000037
GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0811
UniProtKB-KW:KW-0653

P

Seeded From UniProt

complete

involved_in

GO:0006508

proteolysis

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0645

P

Seeded From UniProt

complete

involved_in

GO:0016032

viral process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0945

P

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0378

F

Seeded From UniProt

complete

part_of

GO:0005643

nuclear pore

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0906
UniProtKB-SubCell:SL-0185

C

Seeded From UniProt

complete

involved_in

GO:0051028

mRNA transport

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0509

P

Seeded From UniProt

complete

enables

GO:0008233

peptidase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0645

F

Seeded From UniProt

complete

enables

GO:0008236

serine-type peptidase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0720

F

Seeded From UniProt

complete

part_of

GO:0031965

nuclear membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0182

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0190

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 1.8 Capitanio, JS et al. (2017) Human Nup98 regulates the localization and activity of DExH/D-box helicase DHX9. Elife 6 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 2.4 Krull, S et al. (2004) Nucleoporins as components of the nuclear pore complex core structure and Tpr as the architectural element of the nuclear basket. Mol. Biol. Cell 15 4261-77 PubMed GONUTS page
  3. 3.0 3.1 3.2 3.3 Frosst, P et al. (2002) Tpr is localized within the nuclear basket of the pore complex and has a role in nuclear protein export. J. Cell Biol. 156 617-30 PubMed GONUTS page
  4. 4.0 4.1 Hase, ME & Cordes, VC (2003) Direct interaction with nup153 mediates binding of Tpr to the periphery of the nuclear pore complex. Mol. Biol. Cell 14 1923-40 PubMed GONUTS page
  5. Krull, S et al. (2010) Protein Tpr is required for establishing nuclear pore-associated zones of heterochromatin exclusion. EMBO J. 29 1659-73 PubMed GONUTS page
  6. Glavy, JS et al. (2007) Cell-cycle-dependent phosphorylation of the nuclear pore Nup107-160 subcomplex. Proc. Natl. Acad. Sci. U.S.A. 104 3811-6 PubMed GONUTS page
  7. 7.0 7.1 7.2 Loïodice, I et al. (2004) The entire Nup107-160 complex, including three new members, is targeted as one entity to kinetochores in mitosis. Mol. Biol. Cell 15 3333-44 PubMed GONUTS page
  8. 8.0 8.1 8.2 8.3 8.4 Grandi, P et al. (1997) Nup93, a vertebrate homologue of yeast Nic96p, forms a complex with a novel 205-kDa protein and is required for correct nuclear pore assembly. Mol. Biol. Cell 8 2017-38 PubMed GONUTS page
  9. Fontoura, BM et al. (1999) A conserved biogenesis pathway for nucleoporins: proteolytic processing of a 186-kilodalton precursor generates Nup98 and the novel nucleoporin, Nup96. J. Cell Biol. 144 1097-112 PubMed GONUTS page
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