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Category:Team I broke mitosis

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StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
unacceptableHUMAN:P53CameronCriswell, Team I broke mitosis2018-04-17 16:31:00 CDTGO:0045833 negative regulation of lipid metabolic process (P)PMID:21336310ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2c shows that in p53-/- cells there is a significant increase in lipid formation compared to p53+/+ cells with or without DHEA in humans

Organism: Human

challenge
acceptableHUMAN:P53CameronCriswell, Team I broke mitosis2018-04-17 16:30:00 CDTGO:1905856 negative regulation of pentose-phosphate shunt (P)PMID:21336310ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 1a shows that in p53-/- cells there is a significant increase in oxidative pentose phosphate pathway flux compared to p53+/+ cells in humans

Organism: Human

challenge
updatedbyinstructorYEAST:TOR1CameronCriswell, Team I broke mitosis2018-04-17 13:46:47 CDTGO:0006468 protein phosphorylation (P)PMID:18270585ECO:0000314 direct assay evidence used in manual assertion

Figure 4C shows that " Gln3-myc13p runs faster in hsf1 R206S, F256S cells compared to HSF1 cells." The TOR kinase controls the phosphorylation of HSF1. Dephosphorylated proteins run faster than phosphorylated in yeast.

challenge
acceptableMOUSE:KDM1ACameronCriswell, Team I broke mitosis2018-03-20 13:26:16 CDTGO:0045665 negative regulation of neuron differentiation (P)PMID:29370269ECO:0000316 genetic interaction evidence used in manual assertion

Figure 6 shows that PAX2 interacting with KDM1A (called LSD1 in paper) causes negitive regulation of neuronal differentiation in mice.

challenge
acceptableMOUSE:KDM1ACameronCriswell, Team I broke mitosis2018-02-27 14:39:28 CSTGO:0016581 NuRD complex (C)PMID:29370269ECO:0000314 direct assay evidence used in manual assertion

Figure 2D shows how KDMA1 (called LSD1 in paper) is associated with the NuRD complex in mice.

challenge
acceptableMOUSE:PAX2CameronCriswell, Team I broke mitosis2018-02-27 14:35:37 CSTGO:0016581 NuRD complex (C)PMID:29370269ECO:0000314 direct assay evidence used in manual assertion

Figure 2C shows that PAX2 (Pax2 in paper) associates with the NuRD complex in mice.

challenge
correctedthroughchallengesMOUSE:TMPS3CameronCriswell, Team I broke mitosis2018-02-27 13:46:17 CSTGO:0010629 negative regulation of gene expression (P)PMID:23255163ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2 shows Tmprss3 negatively regulates multiple proteins related to Kcnma1 as shown in green portion of Figure 2B,C.

challenge
acceptableMOUSE:KDM1ACameronCriswell, Team I broke mitosis2018-02-13 14:46:16 CSTGO:0034649 histone demethylase activity (H3-monomethyl-K4 specific) (F)PMID:29370269ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5B shows that the inhibition of LSD1 (alpha-LSD1), had significantly higher levels of H3K4me1 (mono-methylation) versus the functioning LSD1, denoted as KDM1A in UNIPROT, in mice.

challenge
acceptableMOUSE:KDM1ACameronCriswell, Team I broke mitosis2018-02-13 14:43:34 CSTGO:0034648 histone demethylase activity (H3-dimethyl-K4 specific) (F)PMID:29370269ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 5B shows that the inhibition of LSD1 (alpha-LSD1), had significantly higher levels of H3K4me2 (di-methylation) versus the functioning LSD1 denoted as KDM1A in UNIPROT, in mice.

challenge
correctedthroughchallengesMOUSE:TMPS3CameronCriswell, Team I broke mitosis2018-02-11 16:48:34 CSTGO:0010628 positive regulation of gene expression (P)PMID:23255163ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2 shows Tmprss3 positively regulates multiple proteins related to Kcnma1 as shown in red portion of Figure 2B,C.

challenge
acceptableARATH:OE64MCameronCriswell, Team I broke mitosis2018-02-11 16:45:04 CSTGO:0030150 protein import into mitochondrial matrix (P)PMID:29374544ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2C shows protein import into mitochondrial matrix. Phosphorylation-mimicking OMG4 mutation (S568D) shows reduced % pFAD imported compared to OM64 WT and phospho-deficient OM64 mutation (S568A) in Arabidopsis Thaliana.

challenge
acceptableMOUSE:HSF1CameronCriswell, Team I broke mitosis2018-02-10 12:15:28 CSTGO:0010628 positive regulation of gene expression (P)PMID:26251235ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4 shows a significant decrease in mRNA production in the HSF1KO-HD in mice relative to the control group. This indicates that HSF1 is a positive regulator of gene expression in Nfatc2, Pdzk3, and Cryab in heart, spleen and straitium tissues.

challenge

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Pages in category "Team I broke mitosis"

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