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YEAST:SWI3
Contents
Species (Taxon ID) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). (559292) | |
Gene Name(s) | SWI3 (synonyms: TYE2) | |
Protein Name(s) | SWI/SNF complex subunit SWI3
Transcription factor TYE2 Transcription regulatory protein SWI3 | |
External Links | ||
UniProt | P32591 | |
EMBL | M84390 X56792 Z49451 BK006943 | |
PIR | S26706 | |
RefSeq | NP_012359.1 | |
PDB | 2FQ3 | |
PDBsum | 2FQ3 | |
ProteinModelPortal | P32591 | |
SMR | P32591 | |
BioGrid | 33585 | |
DIP | DIP-2471N | |
IntAct | P32591 | |
MINT | MINT-563159 | |
STRING | 4932.YJL176C | |
MaxQB | P32591 | |
PaxDb | P32591 | |
PeptideAtlas | P32591 | |
EnsemblFungi | [example_ID YJL176C] | |
GeneID | 853264 | |
KEGG | sce:YJL176C | |
CYGD | YJL176c | |
SGD | S000003712 | |
eggNOG | COG5259 | |
GeneTree | ENSGT00390000018166 | |
HOGENOM | HOG000142068 | |
InParanoid | P32591 | |
KO | K11772 | |
OrthoDB | EOG7ZWDBR | |
BioCyc | YEAST:G3O-31611-MONOMER | |
EvolutionaryTrace | P32591 | |
NextBio | 973526 | |
Proteomes | UP000002311 | |
Genevestigator | P32591 | |
GO | GO:0005829 GO:0005634 GO:0016514 GO:0003682 GO:0003677 GO:0042393 GO:0006200 GO:0043044 GO:0000436 GO:0044109 GO:0031496 GO:0045944 GO:0005987 GO:0006351 | |
Gene3D | 1.10.10.10 1.10.10.60 | |
InterPro | IPR009057 IPR001005 IPR017884 IPR007526 IPR011991 | |
Pfam | PF00249 PF04433 | |
SMART | SM00717 | |
SUPFAM | SSF46689 | |
PROSITE | PS51293 PS50934 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0000076 |
DNA replication checkpoint |
ECO:0000315 |
P |
fig:1 |
complete | |||||
GO:0005657 |
replication fork |
ECO:0000315 |
C |
fig; 1 |
complete | |||||
GO:0006281 |
DNA repair |
ECO:0000315 |
P |
fig: 6 |
complete | |||||
GO:0031297 |
replication fork processing |
ECO:0000315 |
P |
fig: 5 |
complete | |||||
GO:0071902 |
positive regulation of protein serine/threonine kinase activity |
ECO:0000315 |
P |
fig: 6 |
complete | |||||
GO:0007062 |
sister chromatid cohesion |
ECO:0000315 |
P |
fig: 7 |
complete | |||||
GO:0042262 |
DNA protection |
ECO:0000315 |
P |
fig: 1, 6, 7. |
complete | |||||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0044109 |
cellular alcohol catabolic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0043044 |
ATP-dependent chromatin remodeling |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0042393 |
histone binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
SGD:S000000098 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0031496 |
positive regulation of mating type switching |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0016514 |
SWI/SNF complex |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0016514 |
SWI/SNF complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0016514 |
SWI/SNF complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0016514 |
SWI/SNF complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0016514 |
SWI/SNF complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
contributes_to |
GO:0015616 |
DNA translocase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0005987 |
sucrose catabolic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
exists_during:(GO:0071456) |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000436 |
carbon catabolite activation of transcription from RNA polymerase II promoter |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Rapp, JB et al. (2010) Checkpoint-dependent and -independent roles of Swi3 in replication fork recovery and sister chromatid cohesion in fission yeast. PLoS ONE 5 e13379 PubMed GONUTS page
- ↑ Breeden, L & Nasmyth, K (1987) Cell cycle control of the yeast HO gene: cis- and trans-acting regulators. Cell 48 389-97 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 Peterson, CL & Herskowitz, I (1992) Characterization of the yeast SWI1, SWI2, and SWI3 genes, which encode a global activator of transcription. Cell 68 573-83 PubMed GONUTS page
- ↑ 4.0 4.1 Côté, J et al. (1994) Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex. Science 265 53-60 PubMed GONUTS page
- ↑ Yang, X et al. (2007) Swi3p controls SWI/SNF assembly and ATP-dependent H2A-H2B displacement. Nat. Struct. Mol. Biol. 14 540-7 PubMed GONUTS page
- ↑ Stern, M et al. (1984) Five SWI genes are required for expression of the HO gene in yeast. J. Mol. Biol. 178 853-68 PubMed GONUTS page
- ↑ 7.0 7.1 Peterson, CL et al. (1994) Five SWI/SNF gene products are components of a large multisubunit complex required for transcriptional enhancement. Proc. Natl. Acad. Sci. U.S.A. 91 2905-8 PubMed GONUTS page
- ↑ Cairns, BR et al. (1994) A multisubunit complex containing the SWI1/ADR6, SWI2/SNF2, SWI3, SNF5, and SNF6 gene products isolated from yeast. Proc. Natl. Acad. Sci. U.S.A. 91 1950-4 PubMed GONUTS page
- ↑ Dechassa, ML et al. (2008) Architecture of the SWI/SNF-nucleosome complex. Mol. Cell. Biol. 28 6010-21 PubMed GONUTS page
- ↑ Zhang, Y et al. (2006) DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC. Mol. Cell 24 559-68 PubMed GONUTS page
- ↑ 11.0 11.1 Dastidar, RG et al. (2012) The nuclear localization of SWI/SNF proteins is subjected to oxygen regulation. Cell Biosci 2 30 PubMed GONUTS page
- ↑ 12.0 12.1 Da, G et al. (2006) Structure and function of the SWIRM domain, a conserved protein module found in chromatin regulatory complexes. Proc. Natl. Acad. Sci. U.S.A. 103 2057-62 PubMed GONUTS page
- ↑ Löhning, C et al. (1993) Isolation of the TYE2 gene reveals its identity to SWI3 encoding a general transcription factor in Saccharomyces cerevisiae. Curr. Genet. 24 193-9 PubMed GONUTS page
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