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YEAST:PAF1
Contents
Species (Taxon ID) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). (559292) | |
Gene Name(s) | PAF1 | |
Protein Name(s) | RNA polymerase II-associated protein 1
Protein PAF1 | |
External Links | ||
UniProt | P38351 | |
EMBL | X76053 Z36148 BK006936 | |
PIR | S44541 | |
RefSeq | NP_009838.1 | |
ProteinModelPortal | P38351 | |
BioGrid | 32973 | |
DIP | DIP-1149N | |
IntAct | P38351 | |
MINT | MINT-600620 | |
MaxQB | P38351 | |
PaxDb | P38351 | |
PeptideAtlas | P38351 | |
PRIDE | P38351 | |
EnsemblFungi | [example_ID YBR279W] | |
GeneID | 852582 | |
KEGG | sce:YBR279W | |
EuPathDB | FungiDB:YBR279W | |
SGD | S000000483 | |
eggNOG | NOG276051 | |
HOGENOM | HOG000000738 | |
InParanoid | P38351 | |
KO | K15174 | |
OMA | DEWISMY | |
OrthoDB | EOG7F2534 | |
BioCyc | YEAST:G3O-29199-MONOMER | |
NextBio | 971727 | |
PRO | PR:P38351 | |
Proteomes | UP000002311 | |
GO | GO:0016593 GO:0005634 GO:0035327 GO:0003682 GO:1990269 GO:0000993 GO:0000983 GO:0001076 GO:0001089 GO:0000183 GO:0006353 GO:0070911 GO:0016570 GO:0031124 GO:0045910 GO:0000122 GO:2001255 GO:2001165 GO:2001209 GO:0032968 GO:0031938 GO:2001173 GO:2001166 GO:0051569 GO:2001163 GO:0006357 GO:0000083 GO:0090262 GO:0006364 GO:0031126 GO:0001015 GO:0006362 GO:0006368 GO:0006360 | |
InterPro | IPR007133 | |
PANTHER | PTHR23188 | |
Pfam | PF03985 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0000122 |
negative regulation of transcription from RNA polymerase II promoter |
ECO:0000315 |
P |
Figure 1 shows greater ARG1 expression caused Paf1 deletion. This is due to Paf1 mediated negative regulation of RNA polymerase II. |
complete | |||||
involved_in |
GO:2001255 |
positive regulation of histone H3-K36 trimethylation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:2001209 |
positive regulation of transcription elongation from RNA polymerase I promoter |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:2001173 |
regulation of histone H2B conserved C-terminal lysine ubiquitination |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:2001166 |
regulation of histone H2B ubiquitination |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:2001165 |
positive regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:2001163 |
regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:1990269 |
RNA polymerase II C-terminal domain phosphoserine binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0090262 |
regulation of transcription-coupled nucleotide-excision repair |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
SGD:S000000318 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0070911 |
global genome nucleotide-excision repair |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051569 |
regulation of histone H3-K4 methylation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051569 |
regulation of histone H3-K4 methylation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051569 |
regulation of histone H3-K4 methylation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045910 |
negative regulation of DNA recombination |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0035327 |
transcriptionally active chromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032968 |
positive regulation of transcription elongation from RNA polymerase II promoter |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0031938 |
regulation of chromatin silencing at telomere |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0031938 |
regulation of chromatin silencing at telomere |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0031126 |
snoRNA 3'-end processing |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0031124 |
mRNA 3'-end processing |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0016593 |
Cdc73/Paf1 complex |
ECO:0000353 |
physical interaction evidence used in manual assertion |
SGD:S000004410 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0016593 |
Cdc73/Paf1 complex |
ECO:0000353 |
physical interaction evidence used in manual assertion |
SGD:S000003213 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0016593 |
Cdc73/Paf1 complex |
ECO:0000353 |
physical interaction evidence used in manual assertion |
SGD:S000004410 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006368 |
transcription elongation from RNA polymerase II promoter |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
SGD:S000003011 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006368 |
transcription elongation from RNA polymerase II promoter |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006364 |
rRNA processing |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006362 |
transcription elongation from RNA polymerase I promoter |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006360 |
transcription by RNA polymerase I |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
SGD:S000005192 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006360 |
transcription by RNA polymerase I |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006357 |
regulation of transcription by RNA polymerase II |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006353 |
DNA-templated transcription, termination |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
happens_during:(GO:0009302) |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003682 |
chromatin binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0001015 |
snoRNA transcription by RNA polymerase II |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0001015 |
snoRNA transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0000993 |
RNA polymerase II complex binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
SGD:S000002299 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000183 |
chromatin silencing at rDNA |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000122 |
negative regulation of transcription by RNA polymerase II |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000083 |
regulation of transcription involved in G1/S transition of mitotic cell cycle |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0035327 |
transcriptionally active chromatin |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0010750 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0016593 |
Cdc73/Paf1 complex |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0010750 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003682 |
chromatin binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1923988 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000993 |
RNA polymerase II complex binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000573292 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006368 |
transcription elongation from RNA polymerase II promoter |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0016570 |
histone modification |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0016593 |
Cdc73/Paf1 complex |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Crisucci, EM & Arndt, KM (2012) Paf1 restricts Gcn4 occupancy and antisense transcription at the ARG1 promoter. Mol. Cell. Biol. 32 1150-63 PubMed GONUTS page
- ↑ Chu, Y et al. (2007) Regulation of histone modification and cryptic transcription by the Bur1 and Paf1 complexes. EMBO J. 26 4646-56 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 Zhang, Y et al. (2010) The RNA polymerase-associated factor 1 complex (Paf1C) directly increases the elongation rate of RNA polymerase I and is required for efficient regulation of rRNA synthesis. J. Biol. Chem. 285 14152-9 PubMed GONUTS page
- ↑ Kim, J & Roeder, RG (2009) Direct Bre1-Paf1 complex interactions and RING finger-independent Bre1-Rad6 interactions mediate histone H2B ubiquitylation in yeast. J. Biol. Chem. 284 20582-92 PubMed GONUTS page
- ↑ 5.0 5.1 Wood, A et al. (2003) The Paf1 complex is essential for histone monoubiquitination by the Rad6-Bre1 complex, which signals for histone methylation by COMPASS and Dot1p. J. Biol. Chem. 278 34739-42 PubMed GONUTS page
- ↑ Nordick, K et al. (2008) Direct interactions between the Paf1 complex and a cleavage and polyadenylation factor are revealed by dissociation of Paf1 from RNA polymerase II. Eukaryotic Cell 7 1158-67 PubMed GONUTS page
- ↑ 7.0 7.1 7.2 Mueller, CL et al. (2004) The Paf1 complex has functions independent of actively transcribing RNA polymerase II. Mol. Cell 14 447-56 PubMed GONUTS page
- ↑ Qiu, H et al. (2012) Pol II CTD kinases Bur1 and Kin28 promote Spt5 CTR-independent recruitment of Paf1 complex. EMBO J. 31 3494-505 PubMed GONUTS page
- ↑ 9.0 9.1 Tatum, D et al. (2011) Diverse roles of RNA polymerase II-associated factor 1 complex in different subpathways of nucleotide excision repair. J. Biol. Chem. 286 30304-13 PubMed GONUTS page
- ↑ 10.0 10.1 Krogan, NJ et al. (2003) The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation. Mol. Cell 11 721-9 PubMed GONUTS page
- ↑ 11.0 11.1 Carvin, CD & Kladde, MP (2004) Effectors of lysine 4 methylation of histone H3 in Saccharomyces cerevisiae are negative regulators of PHO5 and GAL1-10. J. Biol. Chem. 279 33057-62 PubMed GONUTS page
- ↑ Chang, M et al. (1999) A complex containing RNA polymerase II, Paf1p, Cdc73p, Hpr1p, and Ccr4p plays a role in protein kinase C signaling. Mol. Cell. Biol. 19 1056-67 PubMed GONUTS page
- ↑ 13.0 13.1 Pokholok, DK et al. (2002) Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo. Mol. Cell 9 799-809 PubMed GONUTS page
- ↑ Rondón, AG et al. (2004) Molecular evidence indicating that the yeast PAF complex is required for transcription elongation. EMBO Rep. 5 47-53 PubMed GONUTS page
- ↑ Marton, HA & Desiderio, S (2008) The Paf1 complex promotes displacement of histones upon rapid induction of transcription by RNA polymerase II. BMC Mol. Biol. 9 4 PubMed GONUTS page
- ↑ 16.0 16.1 16.2 Sheldon, KE et al. (2005) A Requirement for the Saccharomyces cerevisiae Paf1 complex in snoRNA 3' end formation. Mol. Cell 20 225-36 PubMed GONUTS page
- ↑ 17.0 17.1 Mueller, CL & Jaehning, JA (2002) Ctr9, Rtf1, and Leo1 are components of the Paf1/RNA polymerase II complex. Mol. Cell. Biol. 22 1971-80 PubMed GONUTS page
- ↑ 18.0 18.1 18.2 Squazzo, SL et al. (2002) The Paf1 complex physically and functionally associates with transcription elongation factors in vivo. EMBO J. 21 1764-74 PubMed GONUTS page
- ↑ Shi, X et al. (1997) Cdc73p and Paf1p are found in a novel RNA polymerase II-containing complex distinct from the Srbp-containing holoenzyme. Mol. Cell. Biol. 17 1160-9 PubMed GONUTS page
- ↑ Zhang, Y et al. (2009) The Paf1 complex is required for efficient transcription elongation by RNA polymerase I. Proc. Natl. Acad. Sci. U.S.A. 106 2153-8 PubMed GONUTS page
- ↑ Tomson, BN et al. (2013) Effects of the Paf1 complex and histone modifications on snoRNA 3'-end formation reveal broad and locus-specific regulation. Mol. Cell. Biol. 33 170-82 PubMed GONUTS page
- ↑ Porter, SE et al. (2005) Separation of the Saccharomyces cerevisiae Paf1 complex from RNA polymerase II results in changes in its subnuclear localization. Eukaryotic Cell 4 209-20 PubMed GONUTS page
- ↑ Qiu, H et al. (2006) The Spt4p subunit of yeast DSIF stimulates association of the Paf1 complex with elongating RNA polymerase II. Mol. Cell. Biol. 26 3135-48 PubMed GONUTS page
- ↑ Mueller, JE et al. (2006) The requirements for COMPASS and Paf1 in transcriptional silencing and methylation of histone H3 in Saccharomyces cerevisiae. Genetics 173 557-67 PubMed GONUTS page
- ↑ Koch, C et al. (1999) A role for Ctr9p and Paf1p in the regulation G1 cyclin expression in yeast. Nucleic Acids Res. 27 2126-34 PubMed GONUTS page
- ↑ 26.0 26.1 26.2 26.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
f
n
o
- GO:0016570 ! obsolete histone modification
- GO:2001255 ! obsolete positive regulation of histone H3-K36 trimethylation
- GO:2001165 ! obsolete positive regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues
- GO:2001173 ! obsolete regulation of histone H2B conserved C-terminal lysine ubiquitination
- GO:2001166 ! obsolete regulation of histone H2B ubiquitination
- GO:0051569 ! obsolete regulation of histone H3-K4 methylation
- GO:0031938 ! obsolete regulation of chromatin silencing at telomere
- GO:2001163 ! obsolete regulation of phosphorylation of RNA polymerase II C-terminal domain serine 2 residues
- GO:0000083 ! obsolete regulation of transcription involved in G1/S transition of mitotic cell cycle
p
r
- GO:0000183 ! rDNA heterochromatin formation
- GO:0006357 ! regulation of transcription by RNA polymerase II
- GO:0090262 ! regulation of transcription-coupled nucleotide-excision repair
- GO:1990269 ! RNA polymerase II C-terminal domain phosphoserine binding
- GO:0000993 ! RNA polymerase II complex binding
- GO:0006364 ! rRNA processing
s