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User:Chensi1

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Phage Hunters Spring 2016

My Annotations

StatusPageDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
unacceptable9CAUD:G0XM982016-04-11 04:17:09 CDTGO:0098025 virus tail, baseplate (C)PMID:21481199ECO:0000247 sequence alignment evidence used in manual assertion

Figure 3 shows gp103 is products putative baseplate in Listeria Bacteriophage A511 and comparison of the structural proteins with Sb-1 shows Sb-1 has similar DNA band.

challenge
unacceptable9CAUD:A0A0K2D0472016-04-11 04:34:04 CDTGO:0098025 virus tail, baseplate (C)other:BlastECO:0000250 sequence similarity evidence used in manual assertion

BLASTP shows that protein coded by TSARBOMBA_104 is a homolog of "Putative baseplate protein" G0XM98 (coded by orf101)with E-value 9e-58.

challenge
unacceptableBPA51:A8AST72016-04-11 02:22:33 CDTGO:0098025 virus tail, baseplate (C)PMID:18567664ECO:0000250 sequence similarity evidence used in manual assertion

Researchers sequenced A511 gene. Base on Blast analyses and amino acid sequence similarities, they assigned gp103 is baseplate protein, which shows in Table S1 in the supplemental material.

challenge
unacceptable9CAUD:A0A0K2CZR92016-04-11 04:59:50 CDTGO:0098015 virus tail (C)Blast:BlastECO:0000250 sequence similarity evidence used in manual assertion

Blast shows TSARBOMBA_107 is homolog with BCB4_0238(UniProt accession:J9PUX9).E-value is 0.0, query cover 100%. BCB4_0238 code a tail protein.

challenge
unacceptable9CAUD:J9PUX92016-04-11 05:01:41 CDTGO:0098015 virus tail (C)PMID:23649177ECO:0000250 sequence similarity evidence used in manual assertion

In paper table 2 shows BCB4_0238 is putative tail protein.Blast shows BCB4_0238 of Bacillus phage B4 is homolog with orf203 of Bc431v3. E-value is 0.0, query cover is 99%. orf203 of is tail protein.

challenge
unacceptable9CAUD:M4HPF12016-04-11 04:54:08 CDTGO:0098015 virus tail (C)PMID:23388049ECO:0000314 direct assay evidence used in manual assertion

In the paper researchers used proteomic analysis determined that orf203 of Bc431v3 is tail protein.

challenge

acceptable:0
unacceptable:6
requires_changes:0
flagged:0

Annotations challenged by Chensi1

StatusAuthor,GroupPageGO Term (Aspect)ReferenceEvidenceLinksPage history
unacceptableAmariam1,
Team You can't B. cereus
9CAUD:A0A0K2D089GO:0046798 - viral portal complex (C)PMID:12239300ECO:0000316 genetic interaction evidence used in manual assertionchallengeC: 5
unacceptableE63,
Team Blue A
9CAUD:A0A0K2D000GO:0004146 - dihydrofolate reductase activity (F)PMID:26147643ECO:0000250 sequence similarity evidence used in manual assertionchallengeC: 4
unacceptableE63,
Team Blue A
9CAUD:A0A0K2D000GO:0050661 - NADP binding (F)PMID:6815179ECO:0000250 sequence similarity evidence used in manual assertionchallengeC: 3

0 annotations fixed by Chensi1

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