User:Beebeje1

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
acceptable	HV1A2:NEF	2012-04-10 11:06:26 CDT	GO:0007171 activation of transmembrane receptor protein tyrosine kinase activity (P)	PMID:9218412	ECO:0000314 direct assay evidence used in manual assertion	Figure 3 shows that when nef is present with hck it can induce tyrosine phosphorylation of endogenous proteins in wild type cells	challenge
requireschanges	STAA8:ARCR	2012-04-10 11:43:33 CDT	GO:1900079 regulation of arginine biosynthetic process (P)	PMID:17557828	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 3 shows that arcR regulates the arginine biosynthetic process by controlling transcription of the arc operon.	challenge
acceptable	STAA8:ARCR	2012-04-10 11:48:24 CDT	GO:0006355 regulation of transcription, DNA-dependent (P)	PMID:17557828	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 3 shows that arcR is responsible for the transcription of genes within the arc operon under anaerobic conditions.	challenge
requireschanges	CLOSR:Q8GJ42	2012-04-11 11:36:34 CDT	GO:0045493 xylan catabolic process (P)	PMID:15256568	ECO:0000314 direct assay evidence used in manual assertion	Figure 3 shows the hydrolysis of xylobiose to xylose. Xylobiose is a Xylan degradation product that is further degraded to xylose.	challenge
acceptable	AGRRK:B9J8G0	2012-04-14 22:41:09 CDT	GO:0000773 phosphatidyl-N-methylethanolamine N-methyltransferase activity (F)	PMID:19181804	ECO:0000314 direct assay evidence used in manual assertion	Figure 3 shows that in the absence of pmtA PE is not converted to PC by transmethylation reactions. While in the presence of pmtA it is converted to intermediates of the pathway and PC.	challenge
acceptable	YEAS8:C8ZHG8	2012-04-14 22:54:55 CDT	GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA (P)	PMID:9482745	ECO:0000314 direct assay evidence used in manual assertion	Figure 3 shows that Dcp1p is sufficient to remove the m7Gpp cap from mRNA.	challenge

acceptable:4
unacceptable:0
requires_changes:2
flagged:0

Annotations challenged by Beebeje1

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history

0 annotations fixed by Beebeje1

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
requireschanges	STAAU:ARSC	2012-03-28 11:40:59 CDT	GO:0055114 oxidation-reduction process (P)	PMID:1409657	ECO:0000316 genetic interaction evidence used in manual assertion	Figure 2: In this figure there is a strain that contains arsB, arsR, and arsC. This stain is capable of reducing arsenate to arsenite. The second strain used has mutations in both arsB and arsR but is still able to reduce arsenate indicating arsC is responsible for arsenate reduction.	challenge

acceptable:0
unacceptable:0
requires_changes:1
flagged:0

Annotations challenged by Beebeje1

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history

0 annotations fixed by Beebeje1