GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.
Cacao
| GO:0019835 | cytolysis | PMID:26375388 | IDA: Inferred from Direct Assay | P | ||||
| This annotation made on page: 9VIRU:A0A088FLK9 By: DFrank (group Team Green A 2018) on 2018-03-17 18:09:40 CDT. | ||||||||
You must be logged in to challenge this annotation.
| Entry Type | Challenging User,Group | Time/Date | Challenge Reason | Points/Assessment | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Challenge | MKoert, Team Red A 2018 | 2018-03-23 14:12:09 CDT | I am not sure I agree with your GO term, the evidence you shown definitely points to it being lytic and it is likely your gene is an endolysin however I am not sure it meets the specific cytolysis definition of "The rupture of cell membranes and the loss of cytoplasm" without showing it actively ruptures the cytoplasm, just showing that it has the same mass as an endolysin and it kills the cells. Perhaps try a different GO term would be better suited or possibly more data showing that it works by breaking the cytoplasm. | 1 | ||||||||||||||||||
| Private Assessment | JimHu | 2019-06-06 16:18:28 CDT | You need to be an instructor to view these notes. | Updated by Instructor ✔ Protein ✔ Publication ✔ Qualifier ✔ Go term ✔ Evidence ✔ With/From ✔ Notes ✔ Unique/Original | ||||||||||||||||||
| Private Assessment | JimHu | 2019-06-06 16:08:57 CDT | You need to be an instructor to view these notes. | Requires Changes ✔ Protein ✔ Publication ✗ Qualifier ✔ Go term ✔ Evidence ✔ With/From ✔ Notes ✔ Unique/Original | ||||||||||||||||||
| Public Assessment | Ivanerill | 2018-05-07 08:18:23 CDT | No notes given. | Acceptable ✔ Protein ✔ Publication ✔ Qualifier ✔ Go term ✔ Evidence ✔ With/From ✔ Notes ✔ Unique/Original | ||||||||||||||||||
| Public Assessment | DanielRenfro | 2018-05-02 13:37:07 CDT | This annotation has been flagged because it has been edited since last assessment
| Flagged | ||||||||||||||||||
| Public Assessment | Ivanerill | 2018-05-02 11:44:39 CDT | no, that is not a term derived from GO:0019835. Go to QuickGO and look at GO:0019835 descendents. Think about which organism cell is being lysed | Requires Changes ✗ Go term | ||||||||||||||||||
| Public Assessment | DanielRenfro | 2018-05-02 11:01:38 CDT | This annotation has been flagged because it has been edited since last assessment
| Flagged | ||||||||||||||||||
| Public Assessment | Ivanerill | 2018-04-30 05:51:52 CDT | Your notes: "This means that the endolysin from Ts2631 phage causes the death of the host cell." Your initial GO term: GO:0019835 - cytolysis. Find a derived term that captures the gist of your note (regulation of cytolysis is not it). | Requires Changes ✗ Go term | ||||||||||||||||||
| Public Assessment | DanielRenfro | 2018-04-15 15:22:28 CDT | This annotation has been flagged because it has been edited since last assessment
| Flagged | ||||||||||||||||||
| Public Assessment | Ivanerill | 2018-04-14 19:38:02 CDT | "T. thermophilus was infected with different concentrations of Ts2631 endolysin." - exposing a cell to a lysin is not "infecting" it; rephrase There is not infection, so the experiment does not prove "killing by virus of host cell" Go back to the https://gowiki.tamu.edu/wiki/index.php/Category:virus-related_terms page or QuickGO to find a term that derives from your original GO:0019835 and applies better to phages | Requires Changes ✗ Go term ✗ Notes | ||||||||||||||||||
| Public Assessment | DanielRenfro | 2018-04-13 20:08:24 CDT | This annotation has been flagged because it has been edited since last assessment
| Flagged | ||||||||||||||||||
| Public Assessment | Ivanerill | 2018-03-24 12:39:16 CDT | Why point to a supplementary figure when there is a figure in the manuscript demonstrating of Ts2631 endolysin lytic activity? Check https://gowiki.tamu.edu/wiki/index.php/Category:virus-related_terms for better suited GO terms. | Requires Changes ✔ Protein ✔ Publication ✔ Qualifier ✗ Go term ✔ With/From ✗ Notes ✔ Unique/Original |
