SYNY3:FTSH2

Species (Taxon ID)	Synechocystis sp. (strain PCC 6803 / Kazusa). (1111708)
Gene Name(s)	ftsH2
Protein Name(s)	ATP-dependent zinc metalloprotease FtsH 2
External Links
UniProt	Q55700
EMBL	BA000022
PIR	S76378
RefSeq	NP_442160.1 YP_005652219.1 YP_007452037.1
ProteinModelPortal	Q55700
SMR	Q55700
IntAct	Q55700
STRING	1148.slr0228
MEROPS	M41.017
PaxDb	Q55700
EnsemblBacteria	BAA10230
GeneID	952628
KEGG	syn:slr0228
PATRIC	23841938
eggNOG	COG0465
HOGENOM	HOG000217276
InParanoid	Q55700
KO	K03798
OMA	ELDNRVQ
OrthoDB	EOG6PKFBJ
PhylomeDB	Q55700
Proteomes	UP000001425
GO	GO:0016021 GO:0042651 GO:0005524 GO:0016887 GO:0004222 GO:0008270 GO:0010206 GO:0030163
Gene3D	3.40.50.300
HAMAP	MF_01458
InterPro	IPR003593 IPR003959 IPR003960 IPR005936 IPR027417 IPR011546 IPR000642
Pfam	PF00004 PF06480 PF01434
SMART	SM00382
SUPFAM	SSF52540
TIGRFAMs	TIGR01241
PROSITE	PS00674

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
part_of	GO:0042651	thylakoid membrane	PMID:16286465^[1]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
part_of	GO:0042651	thylakoid membrane	PMID:12953117^[2]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
	GO:0042651	thylakoid membrane	PMID:16286465^[1]	ECO:0000314			C	Figure 6	complete CACAO 9599
involved_in	GO:0010206	photosystem II repair	PMID:12953117^[2]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
colocalizes_with	GO:0009523	photosystem II	PMID:12953117^[2]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
NOT\|part_of	GO:0005886	plasma membrane	PMID:16286465^[1]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
involved_in	GO:0010304	PSII associated light-harvesting complex II catabolic process	PMID:21873635^[3]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN001130167 UniProtKB:Q1PDW5	P	Seeded From UniProt	complete
involved_in	GO:0010206	photosystem II repair	PMID:21873635^[3]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN001130167 TAIR:locus:2052806 UniProtKB:Q55700	P	Seeded From UniProt	complete
involved_in	GO:0010205	photoinhibition	PMID:21873635^[3]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN001130167 TAIR:locus:2052806 TAIR:locus:2157637	P	Seeded From UniProt	complete
involved_in	GO:0010027	thylakoid membrane organization	PMID:21873635^[3]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN001130167 TAIR:locus:2052806	P	Seeded From UniProt	complete
part_of	GO:0009941	chloroplast envelope	PMID:21873635^[3]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN001130167 TAIR:locus:2009235 TAIR:locus:2011952 TAIR:locus:2052806 TAIR:locus:2157637	C	Seeded From UniProt	complete
part_of	GO:0009535	chloroplast thylakoid membrane	PMID:21873635^[3]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	PANTHER:PTN001130167 TAIR:locus:2009235 TAIR:locus:2011952 TAIR:locus:2052806 TAIR:locus:2157637	C	Seeded From UniProt	complete
involved_in	GO:0006508	proteolysis	PMID:21873635^[3]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	EcoGene:EG11506 PANTHER:PTN000554253 UniProtKB:P9WQN3 UniProtKB:Q8I526	P	Seeded From UniProt	complete
enables	GO:0004176	ATP-dependent peptidase activity	PMID:21873635^[3]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	EcoGene:EG11506 MGI:MGI:1351651 PANTHER:PTN000554253 SGD:S000006228 UniProtKB:Q8I526 UniProtKB:Q96TA2	F	Seeded From UniProt	complete
enables	GO:0004222	metalloendopeptidase activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000642 InterPro:IPR005936 InterPro:IPR011546 InterPro:IPR037219	F	Seeded From UniProt	complete
enables	GO:0005524	ATP binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000642 InterPro:IPR003959 InterPro:IPR003960 InterPro:IPR011546 InterPro:IPR037219	F	Seeded From UniProt	complete
involved_in	GO:0006508	proteolysis	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000642 InterPro:IPR037219	P	Seeded From UniProt	complete
enables	GO:0008270	zinc ion binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR011546	F	Seeded From UniProt	complete
part_of	GO:0016020	membrane	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR005936	C	Seeded From UniProt	complete
part_of	GO:0016021	integral component of membrane	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR011546	C	Seeded From UniProt	complete
enables	GO:0005524	ATP binding	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000078252	F	Seeded From UniProt	complete
enables	GO:0008233	peptidase activity	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000078252	F	Seeded From UniProt	complete
involved_in	GO:0030163	protein catabolic process	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000078252	P	Seeded From UniProt	complete
enables	GO:0008270	zinc ion binding	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000078252	F	Seeded From UniProt	complete
enables	GO:0016887	ATPase activity	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000078252	F	Seeded From UniProt	complete
part_of	GO:0042651	thylakoid membrane	GO_REF:0000104	ECO:0000256	match to sequence model evidence used in automatic assertion	UniRule:UR000078252	C	Seeded From UniProt	complete
enables	GO:0008237	metallopeptidase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0482	F	Seeded From UniProt	complete
involved_in	GO:0006508	proteolysis	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0645	P	Seeded From UniProt	complete
part_of	GO:0016020	membrane	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0472	C	Seeded From UniProt	complete
enables	GO:0000166	nucleotide binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0547	F	Seeded From UniProt	complete
part_of	GO:0016021	integral component of membrane	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0812	C	Seeded From UniProt	complete
enables	GO:0046872	metal ion binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0479	F	Seeded From UniProt	complete
enables	GO:0005524	ATP binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0067	F	Seeded From UniProt	complete
enables	GO:0016787	hydrolase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0378	F	Seeded From UniProt	complete
part_of	GO:0009579	thylakoid	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0793	C	Seeded From UniProt	complete
enables	GO:0008233	peptidase activity	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0645	F	Seeded From UniProt	complete
part_of	GO:0042651	thylakoid membrane	GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-SubCell:SL-0045	C	Seeded From UniProt	complete
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ ^1.0 ^1.1 ^1.2 Komenda, J et al. (2006) The FtsH protease slr0228 is important for quality control of photosystem II in the thylakoid membrane of Synechocystis sp. PCC 6803. J. Biol. Chem. 281 1145-51 PubMed GONUTS page
↑ ^2.0 ^2.1 ^2.2 Silva, P et al. (2003) FtsH is involved in the early stages of repair of photosystem II in Synechocystis sp PCC 6803. Plant Cell 15 2152-64 PubMed GONUTS page
↑ ^3.0 ^3.1 ^3.2 ^3.3 ^3.4 ^3.5 ^3.6 ^3.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[PMID:16286465-1] 1.0 ^1.1 ^1.2 Komenda, J et al. (2006) The FtsH protease slr0228 is important for quality control of photosystem II in the thylakoid membrane of Synechocystis sp. PCC 6803. J. Biol. Chem. 281 1145-51 PubMed GONUTS page

[PMID:12953117-2] 2.0 ^2.1 ^2.2 Silva, P et al. (2003) FtsH is involved in the early stages of repair of photosystem II in Synechocystis sp PCC 6803. Plant Cell 15 2152-64 PubMed GONUTS page

[PMID:21873635-3] 3.0 ^3.1 ^3.2 ^3.3 ^3.4 ^3.5 ^3.6 ^3.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

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SYNY3:FTSH2

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