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SCHPO:RAD32
Contents
Species (Taxon ID) | Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast). (284812) | |
Gene Name(s) | rad32 | |
Protein Name(s) | DNA repair protein rad32 | |
External Links | ||
UniProt | Q09683 | |
EMBL | X82322 CU329670 | |
PIR | S58097 | |
RefSeq | NP_592935.1 | |
PDB | 4FBK 4FBQ 4FBW 4FCX | |
PDBsum | 4FBK 4FBQ 4FBW 4FCX | |
ProteinModelPortal | Q09683 | |
SMR | Q09683 | |
BioGrid | 279207 | |
DIP | DIP-52388N | |
IntAct | Q09683 | |
STRING | 4896.SPAC13C5.07.1 | |
MaxQB | Q09683 | |
PaxDb | Q09683 | |
PRIDE | Q09683 | |
EnsemblFungi | SPAC13C5.07.1 | |
GeneID | 2542757 | |
KEGG | spo:SPAC13C5.07 | |
EuPathDB | FungiDB:SPAC13C5.07 | |
PomBase | SPAC13C5.07 | |
HOGENOM | HOG000216581 | |
InParanoid | Q09683 | |
KO | K10865 | |
OMA | RMFVNKQ | |
PhylomeDB | Q09683 | |
Reactome | R-SPO-1834949 R-SPO-2559586 R-SPO-5693548 R-SPO-5693565 | |
PRO | PR:Q09683 | |
Proteomes | UP000002485 | |
GO | GO:0030870 GO:0000784 GO:0035861 GO:1990421 GO:0008408 GO:0008296 GO:0045027 GO:0008311 GO:0030145 GO:0004518 GO:0008310 GO:0000014 GO:0000403 GO:0042769 GO:0000729 GO:0006302 GO:1990918 GO:0000724 GO:0006303 GO:0031573 GO:1990898 GO:0042138 GO:0097552 GO:0007095 GO:0007131 GO:0072422 GO:0000723 | |
Gene3D | 3.30.110.110 3.60.21.10 | |
InterPro | IPR004843 IPR029052 IPR003701 IPR007281 IPR038487 | |
Pfam | PF00149 PF04152 | |
PIRSF | PIRSF000882 | |
SMART | SM01347 | |
TIGRFAMs | TIGR00583 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0006303 |
double-strand break repair via nonhomologous end joining |
ECO:0000315 |
P |
Mre11, a protein required for double stranded break repair via non homologous end joining, forms a dimer to bridge the gap between the two broken ends of the double-stranded DNA. Figure 6 proves how dimerization of mre11 ( or rad32 in S. pombe) needs to occur for efficient non homologous end joining since the introduced mutations in the Mre11 dimerization domain, but not the nuclease domain, reduce NHEJ. This data is represented by the drastic decrease in PCR products since the bands for PCR products would indicate successful repair by non homologous end-joining. Therefore, mre11 dimerization is essential for NHEJ since there were no excision products from PCR. |
complete | |||||
involved_in |
GO:1990918 |
double-strand break repair involved in meiotic recombination |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1990898 |
meiotic DNA double-strand break clipping |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1990898 |
meiotic DNA double-strand break clipping |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1990898 |
meiotic DNA double-strand break clipping |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:1990421 |
subtelomeric heterochromatin |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0072422 |
signal transduction involved in DNA damage checkpoint |
ECO:0000305 |
curator inference used in manual assertion |
GO:0030870 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0045027 |
DNA end binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0042769 |
DNA damage response, detection of DNA damage |
ECO:0000305 |
curator inference used in manual assertion |
GO:0030870 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0042138 |
meiotic DNA double-strand break formation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0035861 |
site of double-strand break |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0035861 |
site of double-strand break |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0035861 |
site of double-strand break |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0035861 |
site of double-strand break |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0031573 |
intra-S DNA damage checkpoint |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0030870 |
Mre11 complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0030145 |
manganese ion binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0008311 |
double-stranded DNA 3'-5' exodeoxyribonuclease activity |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0008310 |
single-stranded DNA 3'-5' exodeoxyribonuclease activity |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007131 |
reciprocal meiotic recombination |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006303 |
double-strand break repair via nonhomologous end joining |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006302 |
double-strand break repair |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0004518 |
nuclease activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0000784 |
nuclear chromosome, telomeric region |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000729 |
DNA double-strand break processing |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000729 |
DNA double-strand break processing |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
part_of:(GO:0000724) |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000724 |
double-strand break repair via homologous recombination |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000723 |
telomere maintenance |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
PomBase:SPAC16A10.07c |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0000403 |
Y-form DNA binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0000014 |
single-stranded DNA endodeoxyribonuclease activity |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0097552 |
mitochondrial double-strand break repair via homologous recombination |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000015644 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0042138 |
meiotic DNA double-strand break formation |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000015644 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0031573 |
intra-S DNA damage checkpoint |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1100512 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0008408 |
3'-5' exonuclease activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002228124 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0008296 |
3'-5'-exodeoxyribonuclease activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN002228124 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007095 |
mitotic G2 DNA damage checkpoint |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0020270 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006303 |
double-strand break repair via nonhomologous end joining |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000015644 |
P |
Seeded From UniProt |
complete | ||
colocalizes_with |
GO:0000784 |
nuclear chromosome, telomeric region |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:1100512 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000724 |
double-strand break repair via homologous recombination |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000015644 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000723 |
telomere maintenance |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0020270 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0004519 |
endonuclease activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006302 |
double-strand break repair |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0008408 |
3'-5' exonuclease activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0016787 |
hydrolase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0030145 |
manganese ion binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0030870 |
Mre11 complex |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0004518 |
nuclease activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0004527 |
exonuclease activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051321 |
meiotic cell cycle |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0004519 |
endonuclease activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Li, Y et al. (2017) Non-Homologous End-Joining with Minimal Sequence Loss Is Promoted by the Mre11-Rad50-Nbs1-Ctp1 Complex in Schizosaccharomyces pombe. Genetics PubMed GONUTS page
- ↑ Young, JA et al. (2004) Conserved and nonconserved proteins for meiotic DNA breakage and repair in yeasts. Genetics 167 593-605 PubMed GONUTS page
- ↑ Rothenberg, M et al. (2009) Ctp1 and the MRN-complex are required for endonucleolytic Rec12 removal with release of a single class of oligonucleotides in fission yeast. PLoS Genet. 5 e1000722 PubMed GONUTS page
- ↑ Milman, N et al. (2009) Meiotic DNA double-strand break repair requires two nucleases, MRN and Ctp1, to produce a single size class of Rec12 (Spo11)-oligonucleotide complexes. Mol. Cell. Biol. 29 5998-6005 PubMed GONUTS page
- ↑ Hartsuiker, E et al. (2009) Ctp1CtIP and Rad32Mre11 nuclease activity are required for Rec12Spo11 removal, but Rec12Spo11 removal is dispensable for other MRN-dependent meiotic functions. Mol. Cell. Biol. 29 1671-81 PubMed GONUTS page
- ↑ Nakamura, TM et al. (2002) Telomere binding of checkpoint sensor and DNA repair proteins contributes to maintenance of functional fission yeast telomeres. Genetics 161 1437-52 PubMed GONUTS page
- ↑ 7.0 7.1 7.2 Chahwan, C et al. (2003) The fission yeast Rad32 (Mre11)-Rad50-Nbs1 complex is required for the S-phase DNA damage checkpoint. Mol. Cell. Biol. 23 6564-73 PubMed GONUTS page
- ↑ 8.0 8.1 Williams, RS et al. (2008) Mre11 dimers coordinate DNA end bridging and nuclease processing in double-strand-break repair. Cell 135 97-109 PubMed GONUTS page
- ↑ Farah, JA et al. (2005) A novel recombination pathway initiated by the Mre11/Rad50/Nbs1 complex eliminates palindromes during meiosis in Schizosaccharomyces pombe. Genetics 169 1261-74 PubMed GONUTS page
- ↑ 10.0 10.1 Limbo, O et al. (2012) Mre11 ATLD17/18 mutation retains Tel1/ATM activity but blocks DNA double-strand break repair. Nucleic Acids Res. 40 11435-49 PubMed GONUTS page
- ↑ 11.0 11.1 Langerak, P et al. (2011) Release of Ku and MRN from DNA ends by Mre11 nuclease activity and Ctp1 is required for homologous recombination repair of double-strand breaks. PLoS Genet. 7 e1002271 PubMed GONUTS page
- ↑ Williams, RS et al. (2009) Nbs1 flexibly tethers Ctp1 and Mre11-Rad50 to coordinate DNA double-strand break processing and repair. Cell 139 87-99 PubMed GONUTS page
- ↑ Limbo, O et al. (2007) Ctp1 is a cell-cycle-regulated protein that functions with Mre11 complex to control double-strand break repair by homologous recombination. Mol. Cell 28 134-46 PubMed GONUTS page
- ↑ 14.0 14.1 14.2 Schiller, CB et al. (2012) Structure of Mre11-Nbs1 complex yields insights into ataxia-telangiectasia-like disease mutations and DNA damage signaling. Nat. Struct. Mol. Biol. 19 693-700 PubMed GONUTS page
- ↑ 15.0 15.1 15.2 Paull, TT & Gellert, M (1998) The 3' to 5' exonuclease activity of Mre 11 facilitates repair of DNA double-strand breaks. Mol. Cell 1 969-79 PubMed GONUTS page
- ↑ 16.0 16.1 Tavassoli, M et al. (1995) Cloning and characterisation of the Schizosaccharomyces pombe rad32 gene: a gene required for repair of double strand breaks and recombination. Nucleic Acids Res. 23 383-8 PubMed GONUTS page
- ↑ Wilson, S et al. (1999) The role of Schizosaccharomyces pombe Rad32, the Mre11 homologue, and other DNA damage response proteins in non-homologous end joining and telomere length maintenance. Nucleic Acids Res. 27 2655-61 PubMed GONUTS page
- ↑ 18.0 18.1 Tomita, K et al. (2003) Competition between the Rad50 complex and the Ku heterodimer reveals a role for Exo1 in processing double-strand breaks but not telomeres. Mol. Cell. Biol. 23 5186-97 PubMed GONUTS page
- ↑ Prudden, J et al. (2003) Pathway utilization in response to a site-specific DNA double-strand break in fission yeast. EMBO J. 22 1419-30 PubMed GONUTS page
- ↑ 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.9 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
d
- Dikarya
- GO:0006974 ! DNA damage response
- GO:0000729 ! DNA double-strand break processing
- GO:0045027 ! DNA end binding
- GO:0006281 ! DNA repair
- GO:0006302 ! double-strand break repair
- GO:1990918 ! double-strand break repair involved in meiotic recombination
- GO:0000724 ! double-strand break repair via homologous recombination
- GO:0006303 ! double-strand break repair via nonhomologous end joining
- GO:0008311 ! double-stranded DNA 3'-5' DNA exonuclease activity
f
m
- GO:0030145 ! manganese ion binding
- GO:0051321 ! meiotic cell cycle
- GO:0042138 ! meiotic DNA double-strand break formation
- GO:0097552 ! mitochondrial double-strand break repair via homologous recombination
- GO:0007095 ! mitotic G2 DNA damage checkpoint signaling
- GO:0031573 ! mitotic intra-S DNA damage checkpoint signaling
- GO:0030870 ! Mre11 complex
n
o
s
- Schizosaccharomyces
- Schizosaccharomyces pombe
- Schizosaccharomycetaceae
- Schizosaccharomycetales
- Schizosaccharomycetes
- GO:0072422 ! signal transduction involved in DNA damage checkpoint
- GO:0008310 ! single-stranded DNA 3'-5' DNA exonuclease activity
- GO:0000014 ! single-stranded DNA endodeoxyribonuclease activity
- GO:0035861 ! site of double-strand break
- GO:1990421 ! subtelomeric heterochromatin