SCHPO:MSH6

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Species (Taxon ID) Schizosaccharomyces pombe (strain ATCC 38366 / 972) (Fission yeast). (taxon:284812)
Gene Name(s) msh6
Protein Name(s)
  • DNA mismatch repair protein msh6
External Links
UniProt Identifier MSH6_SCHPO
UniProt Accessions O74502,
EMBL AF207839, CU329672,
PIR T41262,
RefSeq NP_588344.1,
Pfam PF01624, PF05188, PF05192, PF05190, PF00488,



Annotations

Qualifier GO ID GO term name Reference Evidence Code with/from Aspect Notes Status
GO:0005829

cytosol

IDA: Inferred from Direct Assay

C

Source: GeneDB_SPombe

GO:0005634

nucleus

IDA: Inferred from Direct Assay

C

Source: GeneDB_SPombe

GO:0043570

maintenance of DNA repeat elements

IMP: Inferred from Mutant Phenotype

P

Source: GeneDB_SPombe

GO:0006298

mismatch repair

IMP: Inferred from Mutant Phenotype

P

Source: GeneDB_SPombe

GO:0000166

nucleotide binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0547

F

GO:0000228

nuclear chromosome

GO_REF:0000033

ISS: Inferred from Sequence or Structural Similarity

PANTHER:PTHR11361_AN26

C

GO:0000400

four-way junction DNA binding

GO_REF:0000033

ISS: Inferred from Sequence or Structural Similarity

PANTHER:PTHR11361_AN79

F

GO:0000710

meiotic mismatch repair

GO_REF:0000033

ISS: Inferred from Sequence or Structural Similarity

PANTHER:PTHR11361_AN26

P

GO:0003677

DNA binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0238

F

GO:0003684

damaged DNA binding

GO_REF:0000033

ISS: Inferred from Sequence or Structural Similarity

PANTHER:PTHR11361_AN24

F

GO:0005524

ATP binding

GO_REF:0000001

ISS: Inferred from Sequence or Structural Similarity

SGD:S000002504

F

GO:0005524

ATP binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000432

F

GO:0005524

ATP binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007695

F

GO:0005524

ATP binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007696

F

GO:0005524

ATP binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007860

F

GO:0005524

ATP binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007861

F

GO:0005524

ATP binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016151

F

GO:0005524

ATP binding

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0067

F

GO:0005634

nucleus

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0539

C

GO:0005634

nucleus

GO_REF:0000023

IEA: Inferred from Electronic Annotation

SP_SL:SL-0191

C

GO:0005634

nucleus

PMID:16823372[1]

IDA: Inferred from Direct Assay

C

GO:0005829

cytosol

PMID:16823372[1]

IDA: Inferred from Direct Assay

C

GO:0006281

DNA repair

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0234

P

GO:0006298

mismatch repair

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000432

P

GO:0006298

mismatch repair

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007695

P

GO:0006298

mismatch repair

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007696

P

GO:0006298

mismatch repair

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007860

P

GO:0006298

mismatch repair

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007861

P

GO:0006298

mismatch repair

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016151

P

GO:0006298

mismatch repair

PMID:11333218[2]

IMP: Inferred from Mutant Phenotype

P

GO:0006974

response to DNA damage stimulus

GO_REF:0000004

IEA: Inferred from Electronic Annotation

SP_KW:KW-0227

P

GO:0007131

reciprocal meiotic recombination

GO_REF:0000033

ISS: Inferred from Sequence or Structural Similarity

PANTHER:PTHR11361_AN26

P

GO:0008094

DNA-dependent ATPase activity

GO_REF:0000033

ISS: Inferred from Sequence or Structural Similarity

PANTHER:PTHR11361_AN24

F

GO:0009411

response to UV

GO_REF:0000033

ISS: Inferred from Sequence or Structural Similarity

PANTHER:PTHR11361_AN79

P

GO:0030983

mismatched DNA binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR000432

F

GO:0030983

mismatched DNA binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007695

F

GO:0030983

mismatched DNA binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007696

F

GO:0030983

mismatched DNA binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007860

F

GO:0030983

mismatched DNA binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR007861

F

GO:0030983

mismatched DNA binding

GO_REF:0000002

IEA: Inferred from Electronic Annotation

InterPro:IPR016151

F

GO:0032137

guanine/thymine mispair binding

GO_REF:0000001

ISS: Inferred from Sequence or Structural Similarity

SGD:S000002504

F

GO:0032138

single base insertion or deletion binding

GO_REF:0000033

ISS: Inferred from Sequence or Structural Similarity

PANTHER:PTHR11361_AN79

F

GO:0032301

MutSalpha complex

GO_REF:0000033

ISS: Inferred from Sequence or Structural Similarity

PANTHER:PTHR11361_AN79

C

GO:0043570

maintenance of DNA repeat elements

PMID:11333219[3]

IMP: Inferred from Mutant Phenotype

P

GO:0045910

negative regulation of DNA recombination

GO_REF:0000033

ISS: Inferred from Sequence or Structural Similarity

PANTHER:PTHR11361_AN79

P


Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Matsuyama, A et al. (2006) ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 24 841-7 PubMed GONUTS page
  2. Tornier, C et al. (2001) Requirement for Msh6, but not for Swi4 (Msh3), in Msh2-dependent repair of base-base mismatches and mononucleotide loops in Schizosaccharomyces pombe. Genetics 158 65-75 PubMed GONUTS page
  3. Mansour, AA et al. (2001) Control of GT repeat stability in Schizosaccharomyces pombe by mismatch repair factors. Genetics 158 77-85 PubMed GONUTS page