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SCHPO:DCR1

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Species (Taxon ID) Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast). (284812)
Gene Name(s) dcr1
Protein Name(s) Protein Dicer

Cell cycle control protein dcr1 RNA interference pathway protein dcr1 Endoribonuclease dcr1 ATP-dependent helicase dcr1

External Links
UniProt Q09884
EMBL CU329672
PIR T39130
RefSeq NP_588215.2
PDB 2L6M
PDBsum 2L6M
ProteinModelPortal Q09884
SMR Q09884
BioGrid 275506
STRING 4896.SPCC188.13c.1
SwissPalm Q09884
PaxDb Q09884
PRIDE Q09884
EnsemblFungi SPCC188.13c.1
GeneID 2538930
KEGG spo:SPCC188.13c
EuPathDB FungiDB:SPCC188.13c
PomBase SPCC188.13c
InParanoid Q09884
KO K11592
OMA SFVDYYH
PhylomeDB Q09884
PRO PR:Q09884
Proteomes UP000002485
GO GO:0005737
GO:0005829
GO:0000790
GO:0005719
GO:0031618
GO:0034399
GO:0005634
GO:0016442
GO:0005524
GO:0003690
GO:0003725
GO:1990188
GO:0004386
GO:0004540
GO:0004525
GO:0008270
GO:0007049
GO:0034613
GO:0007059
GO:0033562
GO:0035389
GO:0070868
GO:0010629
GO:1904595
GO:0070919
GO:0030422
GO:0090052
GO:0051570
GO:0006396
CDD cd00079
cd00593
Gene3D 1.10.1520.10
3.30.160.380
InterPro IPR038248
IPR005034
IPR006935
IPR014001
IPR001650
IPR027417
IPR000999
IPR036389
Pfam PF03368
PF00271
PF04851
PF00636
SMART SM00487
SM00490
SM00535
SUPFAM SSF52540
SSF69065
PROSITE PS51327
PS51192
PS51194
PS00517
PS50142

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0010629

negative regulation of gene expression

PMID:17981703[1]

ECO:0000315

P

Figure 4. Shows the relative protein expression level is increased in the Dcr1 knockout strain when compared to the wild-type strain. Lower protein expression is indicative of lower gene expression.

complete
CACAO 7017

involved_in

GO:0010629

negative regulation of gene expression

PMID:17981703[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:1990188

euchromatin binding

PMID:22431512[2]

ECO:0000314

direct assay evidence used in manual assertion

F

occurs_at:(SO:0001843)

Seeded From UniProt

complete

involved_in

GO:1904595

positive regulation of termination of RNA polymerase II transcription

PMID:25417108[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

occurs_at:(SO:0001637)

Seeded From UniProt

complete

involved_in

GO:1904595

positive regulation of termination of RNA polymerase II transcription

PMID:25417108[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

occurs_at:(SO:0001272)

Seeded From UniProt

complete

involved_in

GO:1904595

positive regulation of termination of RNA polymerase II transcription

PMID:25417108[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

occurs_at:(SO:0001217)

Seeded From UniProt

complete

involved_in

GO:0090052

regulation of chromatin silencing at centromere

PMID:12193640[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0070919

production of siRNA involved in chromatin silencing by small RNA

PMID:28541282[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0070868

heterochromatin organization involved in chromatin silencing

PMID:22895252[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0051570

regulation of histone H3-K9 methylation

PMID:12193640[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0035389

establishment of chromatin silencing at silent mating-type cassette

PMID:14699070[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0034613

cellular protein localization

PMID:15372076[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

has_input:(PomBase:SPAC6F12.09)

Seeded From UniProt

complete

part_of

GO:0034399

nuclear periphery

PMID:22431512[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0033562

co-transcriptional gene silencing by RNA interference machinery

PMID:25543137[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

has_regulation_target:(PomBase:SPBC16D10.08c)

Seeded From UniProt

complete

involved_in

GO:0033562

co-transcriptional gene silencing by RNA interference machinery

PMID:22431512[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0033562

co-transcriptional gene silencing by RNA interference machinery

PMID:21151114[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

occurs_at:(SO:0000286)

Seeded From UniProt

complete

part_of

GO:0031618

nuclear pericentric heterochromatin

PMID:21151114[10]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0030422

production of siRNA involved in RNA interference

PMID:15907173[11]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0016442

RISC complex

GO_REF:0000051

ECO:0000303

author statement without traceable support used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0008270

zinc ion binding

PMID:21847092[12]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0006396

RNA processing

PMID:15907173[11]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

PMID:16823372[13]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

PMID:22431512[2]

ECO:0000314

direct assay evidence used in manual assertion

C

exists_during:(GO:0034605)

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:16823372[13]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:25543137[9]

ECO:0000314

direct assay evidence used in manual assertion

C

exists_during:(GO:0034605)

Seeded From UniProt

complete

part_of

GO:0005719

nuclear euchromatin

PMID:22431512[2]

ECO:0000314

direct assay evidence used in manual assertion

C

coincident_with:(SO:0001843)

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:25543137[9]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:22895252[6]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0004540

ribonuclease activity

PMID:15907173[11]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003725

double-stranded RNA binding

PMID:21847092[12]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003690

double-stranded DNA binding

PMID:21847092[12]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0000790

nuclear chromatin

PMID:21151114[10]

ECO:0000314

direct assay evidence used in manual assertion

C

coincident_with:(SO:0001799)

Seeded From UniProt

complete

part_of

GO:0000790

nuclear chromatin

PMID:21151114[10]

ECO:0000314

direct assay evidence used in manual assertion

C

coincident_with:(SO:0001798)

Seeded From UniProt

complete

part_of

GO:0000790

nuclear chromatin

PMID:21151114[10]

ECO:0000314

direct assay evidence used in manual assertion

C

coincident_with:(SO:0001796)

Seeded From UniProt

complete

part_of

GO:0000790

nuclear chromatin

PMID:21151114[10]

ECO:0000314

direct assay evidence used in manual assertion

C

coincident_with:(SO:0001637)

Seeded From UniProt

complete

part_of

GO:0000790

nuclear chromatin

PMID:21151114[10]

ECO:0000314

direct assay evidence used in manual assertion

C

coincident_with:(SO:0001268)

Seeded From UniProt

complete

part_of

GO:0000790

nuclear chromatin

PMID:21151114[10]

ECO:0000314

direct assay evidence used in manual assertion

C

coincident_with:(SO:0001267)

Seeded From UniProt

complete

part_of

GO:0000790

nuclear chromatin

PMID:21151114[10]

ECO:0000314

direct assay evidence used in manual assertion

C

coincident_with:(SO:0001263)

Seeded From UniProt

complete

part_of

GO:0000790

nuclear chromatin

PMID:21151114[10]

ECO:0000314

direct assay evidence used in manual assertion

C

coincident_with:(SO:0000296)

Seeded From UniProt

complete

part_of

GO:0000790

nuclear chromatin

PMID:21151114[10]

ECO:0000314

direct assay evidence used in manual assertion

C

coincident_with:(SO:0000286)

Seeded From UniProt

complete

part_of

GO:0000790

nuclear chromatin

PMID:21151114[10]

ECO:0000314

direct assay evidence used in manual assertion

C

coincident_with:(SO:0000253)

Seeded From UniProt

complete

involved_in

GO:0030422

production of siRNA involved in RNA interference

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0034246
FB:FBgn0039016
MGI:MGI:2177178
PANTHER:PTN000383724
PomBase:SPCC188.13c
UniProtKB:Q9LXW7
UniProtKB:Q9UPY3
WB:WBGene00000939

P

Seeded From UniProt

complete

part_of

GO:0016442

RISC complex

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0034246
FB:FBgn0039016
PANTHER:PTN000383724
UniProtKB:Q9UPY3

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0034246
FB:FBgn0039016
MGI:MGI:2177178
PANTHER:PTN000383724
PomBase:SPCC188.13c
TAIR:locus:2092409
WB:WBGene00000939

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0034246
FB:FBgn0039016
PANTHER:PTN000383724
PomBase:SPCC188.13c
TAIR:locus:2092409
UniProtKB:P84634
UniProtKB:Q9LXW7
UniProtKB:Q9SP32
WB:WBGene00000939

C

Seeded From UniProt

complete

enables

GO:0004525

ribonuclease III activity

PMID:21873635[14]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0034246
MGI:MGI:2177178
PANTHER:PTN000383724
TAIR:locus:2092409
UniProtKB:Q9UPY3
WB:WBGene00000939

F

Seeded From UniProt

complete

involved_in

GO:0090305

nucleic acid phosphodiester bond hydrolysis

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0004519

P

Seeded From UniProt

complete

involved_in

GO:0090305

nucleic acid phosphodiester bond hydrolysis

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0004518

P

Seeded From UniProt

complete

involved_in

GO:0090501

RNA phosphodiester bond hydrolysis

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0004525

P

Seeded From UniProt

complete

involved_in

GO:0090501

RNA phosphodiester bond hydrolysis

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0004540

P

Seeded From UniProt

complete

involved_in

GO:0090501

RNA phosphodiester bond hydrolysis

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0004525

P

Seeded From UniProt

complete

involved_in

GO:0090502

RNA phosphodiester bond hydrolysis, endonucleolytic

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0004525

P

Seeded From UniProt

complete

involved_in

GO:0090502

RNA phosphodiester bond hydrolysis, endonucleolytic

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0016891

P

Seeded From UniProt

complete

involved_in

GO:0090502

RNA phosphodiester bond hydrolysis, endonucleolytic

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0004525

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR006935

F

Seeded From UniProt

complete

enables

GO:0004525

ribonuclease III activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000999
InterPro:IPR036389

F

Seeded From UniProt

complete

enables

GO:0005524

ATP binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR006935

F

Seeded From UniProt

complete

involved_in

GO:0006396

RNA processing

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR000999
InterPro:IPR036389

P

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR006935

F

Seeded From UniProt

complete

enables

GO:0016891

endoribonuclease activity, producing 5'-phosphomonoesters

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR005034

F

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0378

F

Seeded From UniProt

complete

enables

GO:0004386

helicase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0347

F

Seeded From UniProt

complete

involved_in

GO:0007059

chromosome segregation

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0159

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

enables

GO:0004519

endonuclease activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0255

F

Seeded From UniProt

complete

enables

GO:0000166

nucleotide binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0547

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

involved_in

GO:0007049

cell cycle

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0131

P

Seeded From UniProt

complete

involved_in

GO:0031047

gene silencing by RNA

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0943

P

Seeded From UniProt

complete

enables

GO:0004518

nuclease activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0540

F

Seeded From UniProt

complete

enables

GO:0005524

ATP binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0067

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Gobeil, LA et al. (2008) Involvement of Dcr1 in post-transcriptional regulation of gene expression in Schizosaccharomyces pombe. Front. Biosci. 13 2203-15 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 2.4 Woolcock, KJ et al. (2012) RNAi keeps Atf1-bound stress response genes in check at nuclear pores. Genes Dev. 26 683-92 PubMed GONUTS page
  3. 3.0 3.1 3.2 Castel, SE et al. (2014) Dicer promotes transcription termination at sites of replication stress to maintain genome stability. Cell 159 572-83 PubMed GONUTS page
  4. 4.0 4.1 Volpe, TA et al. (2002) Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi. Science 297 1833-7 PubMed GONUTS page
  5. Pisacane, P & Halic, M (2017) Tailing and degradation of Argonaute-bound small RNAs protect the genome from uncontrolled RNAi. Nat Commun 8 15332 PubMed GONUTS page
  6. 6.0 6.1 Kawakami, K et al. (2012) A novel RNAi protein, Dsh1, assembles RNAi machinery on chromatin to amplify heterochromatic siRNA. Genes Dev. 26 1811-24 PubMed GONUTS page
  7. Carmichael, JB et al. (2004) ago1 and dcr1, two core components of the RNA interference pathway, functionally diverge from rdp1 in regulating cell cycle events in Schizosaccharomyces pombe. Mol. Biol. Cell 15 1425-35 PubMed GONUTS page
  8. Sadaie, M et al. (2004) A chromodomain protein, Chp1, is required for the establishment of heterochromatin in fission yeast. EMBO J. 23 3825-35 PubMed GONUTS page
  9. 9.0 9.1 9.2 Oberti, D et al. (2015) Dicer and Hsp104 function in a negative feedback loop to confer robustness to environmental stress. Cell Rep 10 47-61 PubMed GONUTS page
  10. 10.00 10.01 10.02 10.03 10.04 10.05 10.06 10.07 10.08 10.09 10.10 10.11 Woolcock, KJ et al. (2011) Dicer associates with chromatin to repress genome activity in Schizosaccharomyces pombe. Nat. Struct. Mol. Biol. 18 94-9 PubMed GONUTS page
  11. 11.0 11.1 11.2 Qian, Z et al. (2005) Expression and purification of the carboxyl terminus domain of Schizosaccharomyces pombe dicer in Escherichia coli. Protein Pept. Lett. 12 311-4 PubMed GONUTS page
  12. 12.0 12.1 12.2 Barraud, P et al. (2011) An extended dsRBD with a novel zinc-binding motif mediates nuclear retention of fission yeast Dicer. EMBO J. 30 4223-35 PubMed GONUTS page
  13. 13.0 13.1 Matsuyama, A et al. (2006) ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Nat. Biotechnol. 24 841-7 PubMed GONUTS page
  14. 14.0 14.1 14.2 14.3 14.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page