PMID:25561738

Citation	Shinsky, SA, Monteith, KE, Viggiano, S and Cosgrove, MS (2015) Biochemical reconstitution and phylogenetic comparison of human SET1 family core complexes involved in histone methylation. J. Biol. Chem. 290:6361-75
Abstract	Mixed lineage leukemia protein-1 (MLL1) is a member of the SET1 family of histone H3 lysine 4 (H3K4) methyltransferases that are required for metazoan development. MLL1 is the best characterized human SET1 family member, which includes MLL1-4 and SETd1A/B. MLL1 assembles with WDR5, RBBP5, ASH2L, DPY-30 (WRAD) to form the MLL1 core complex, which is required for H3K4 dimethylation and transcriptional activation. Because all SET1 family proteins interact with WRAD in vivo, it is hypothesized they are regulated by similar mechanisms. However, recent evidence suggests differences among family members that may reflect unique regulatory inputs in the cell. Missing is an understanding of the intrinsic enzymatic activities of different SET1 family complexes under standard conditions. In this investigation, we reconstituted each human SET1 family core complex and compared subunit assembly and enzymatic activities. We found that in the absence of WRAD, all but one SET domain catalyzes at least weak H3K4 monomethylation. In the presence of WRAD, all SET1 family members showed stimulated monomethyltransferase activity but differed in their di- and trimethylation activities. We found that these differences are correlated with evolutionary lineage, suggesting these enzyme complexes have evolved to accomplish unique tasks within metazoan genomes. To understand the structural basis for these differences, we employed a "phylogenetic scanning mutagenesis" assay and identified a cluster of amino acid substitutions that confer a WRAD-dependent gain-of-function dimethylation activity on complexes assembled with the MLL3 or Drosophila trithorax proteins. These results form the basis for understanding how WRAD differentially regulates SET1 family complexes in vivo.
Links	PubMed PMC4358272 Online version:10.1074/jbc.M114.627646
Keywords	Amino Acid Substitution; Crystallography, X-Ray; Histone-Lysine N-Methyltransferase/chemistry; Histone-Lysine N-Methyltransferase/genetics; Histone-Lysine N-Methyltransferase/metabolism; Histones/chemistry; Histones/genetics; Humans; Lysine/genetics; Methylation; Multiprotein Complexes; Myeloid-Lymphoid Leukemia Protein/chemistry; Myeloid-Lymphoid Leukemia Protein/genetics; Nuclear Proteins/chemistry; Nuclear Proteins/genetics; Phylogeny; Protein Binding
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Annotations

Gene product	Qualifier	GO Term	Evidence Code	with/from	Aspect	Extension	Notes	Status
HUMAN:KMT2B		GO:0097692: histone H3-K4 monomethylation	ECO:0000314:		P		Figure 2C	complete CACAO 11754
HUMAN:KMT2B		GO:0044648: histone H3-K4 dimethylation	ECO:0000314:		P		Figure 2C	complete CACAO 11755
HUMAN:KMT2A		GO:0044648: histone H3-K4 dimethylation	ECO:0000314:		P		Figure 2C	complete CACAO 11756
HUMAN:KMT2A		GO:0097692: histone H3-K4 monomethylation	ECO:0000314:		P		Figure 2C	complete CACAO 11757
HUMAN:SET1A		GO:0097692: histone H3-K4 monomethylation	ECO:0000314:		P		Figure 2C	complete CACAO 11801
HUMAN:SET1A		GO:0044648: histone H3-K4 dimethylation	ECO:0000314:		P		Figure 2C	complete CACAO 11802
HUMAN:SET1A		GO:0080182: histone H3-K4 trimethylation	ECO:0000314:		P		Figure 2C	complete CACAO 11803
HUMAN:SET1B		GO:0044648: histone H3-K4 dimethylation	ECO:0000314:		P		Figure 2C	complete CACAO 11805
HUMAN:SET1B		GO:0097692: histone H3-K4 monomethylation	ECO:0000314:		P		Figure 2C	complete CACAO 11806
HUMAN:SET1B		GO:0080182: histone H3-K4 trimethylation	ECO:0000314:		P		Figure 2C	complete CACAO 11807

References

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