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MOUSE:VIME

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Species (Taxon ID) Mus musculus (Mouse). (10090)
Gene Name(s) Vim
Protein Name(s) Vimentin
External Links
UniProt P20152
EMBL M24849
X56397
M26251
Z22526
X51438
Y07738
AK033175
D50805
CCDS CCDS15696.1
PIR A43803
RefSeq NP_035831.2
UniGene Mm.268000
ProteinModelPortal P20152
SMR P20152
BioGrid 204524
DIP DIP-188N
IntAct P20152
MINT MINT-1202726
PhosphoSite P20152
REPRODUCTION-2DPAGE IPI00227299
SWISS-2DPAGE P20152
UCD-2DPAGE P20152
MaxQB P20152
PaxDb P20152
PRIDE P20152
Ensembl ENSMUST00000028062
GeneID 22352
KEGG mmu:22352
UCSC uc008ikb.2
CTD 7431
MGI MGI:98932
eggNOG NOG146769
HOGENOM HOG000230977
HOVERGEN HBG013015
InParanoid P20152
KO K07606
OMA INTEFKA
PhylomeDB P20152
TreeFam TF330122
Reactome REACT_210562
REACT_232053
ChiTaRS Vim
NextBio 302643
PRO PR:P20152
Proteomes UP000000589
Bgee P20152
CleanEx MM_VIM
ExpressionAtlas P20152
Genevestigator P20152
GO GO:0031252
GO:0042995
GO:0005737
GO:0005856
GO:0005829
GO:0070062
GO:0005882
GO:0043005
GO:0005777
GO:0005886
GO:0045098
GO:0003725
GO:0005200
GO:0005212
GO:0005198
GO:0014002
GO:0060020
GO:0045109
GO:0045103
GO:0070307
GO:0010977
GO:0010628
GO:0060395
InterPro IPR001664
IPR006821
IPR018039
IPR027699
PANTHER PTHR23239
PTHR23239:SF27
Pfam PF00038
PF04732
PROSITE PS00226

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0010762

regulation of fibroblast migration

PMID:21346197[1]

ECO:0000315

P

Vimentin involvement in lamellipodia formation was inferred from silencing experiments.

complete
CACAO 7171

involved_in

GO:0071225

cellular response to muramyl dipeptide

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P08670

P

Seeded From UniProt

complete

involved_in

GO:0071222

cellular response to lipopolysaccharide

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P08670

P

Seeded From UniProt

complete

involved_in

GO:0010628

positive regulation of gene expression

PMID:19420356[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

has_input:(UniProtKB:Q91VC4)

Seeded From UniProt

complete

enables

GO:0005212

structural constituent of eye lens

PMID:15037121[3]

ECO:0000314

direct assay evidence used in manual assertion

F

occurs_in:(EMAPA:17841)

Seeded From UniProt

complete

enables

GO:0005200

structural constituent of cytoskeleton

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

F

Seeded From UniProt

complete

enables

GO:0005198

structural molecule activity

PMID:12177195[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1931877

F

Seeded From UniProt

complete

enables

GO:0003725

double-stranded RNA binding

PMID:21266579[5]

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

F

Seeded From UniProt

complete

part_of

GO:1990904

ribonucleoprotein complex

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

C

Seeded From UniProt

complete

enables

GO:1990254

keratin filament binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:1900147

regulation of Schwann cell migration

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:621646

P

Seeded From UniProt

complete

enables

GO:0097110

scaffold protein binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0071346

cellular response to interferon-gamma

PMID:19144319[6]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0071225

cellular response to muramyl dipeptide

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0071222

cellular response to lipopolysaccharide

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0070307

lens fiber cell development

PMID:15037121[3]

ECO:0000314

direct assay evidence used in manual assertion

P

occurs_in:(EMAPA:17841)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0060395

SMAD protein signal transduction

PMID:23390484[7]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0060252

positive regulation of glial cell proliferation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:621646

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0060020

Bergmann glial cell differentiation

PMID:10816608[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1931877

P

  • occurs_in:(EMAPA:17787)
  • results_in_acquisition_of_features_of:(CL:0000644)

Seeded From UniProt

complete

enables

GO:0051721

protein phosphatase 2A binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:621646

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0050770

regulation of axonogenesis

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:621646

P

Seeded From UniProt

complete

part_of

GO:0048471

perinuclear region of cytoplasm

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:621646

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045727

positive regulation of translation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

P

Seeded From UniProt

complete

part_of

GO:0045335

phagocytic vesicle

PMID:19144319[6]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045109

intermediate filament organization

PMID:11487638[9]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:95697

P

  • occurs_in:(EMAPA:17544)
  • occurs_in:(CL:0000127)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045103

intermediate filament-based process

PMID:12177195[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:1931877

P

Seeded From UniProt

complete

part_of

GO:0044297

cell body

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:621646

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0043488

regulation of mRNA stability

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

P

Seeded From UniProt

complete

part_of

GO:0043005

neuron projection

PMID:16052496[10]

ECO:0000314

direct assay evidence used in manual assertion

C

part_of:(EMAPA:32804)

Seeded From UniProt

complete

part_of

GO:0042995

cell projection

PMID:10989258[11]

ECO:0000314

direct assay evidence used in manual assertion

C

part_of:(CL:0000644)

Seeded From UniProt

complete

part_of

GO:0042995

cell projection

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:621646

C

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0032967

positive regulation of collagen biosynthetic process

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

P

Seeded From UniProt

complete

part_of

GO:0031252

cell leading edge

PMID:15958512[12]

ECO:0000314

direct assay evidence used in manual assertion

C

part_of:(CL:0000362)

Seeded From UniProt

complete

part_of

GO:0031252

cell leading edge

PMID:15958512[12]

ECO:0000314

direct assay evidence used in manual assertion

C

part_of:(CL:0000066)

Seeded From UniProt

complete

part_of

GO:0030424

axon

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:621646

C

Seeded From UniProt

complete

enables

GO:0019904

protein domain specific binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

F

Seeded From UniProt

complete

enables

GO:0019901

protein kinase binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:621646

F

Seeded From UniProt

complete

enables

GO:0019900

kinase binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:621646

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0014002

astrocyte development

PMID:11487638[9]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:95697

P

  • occurs_in:(EMAPA:17544)
  • results_in_development_of:(CL:0000127)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0010977

negative regulation of neuron projection development

PMID:11487638[9]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:95697

P

  • regulates_o_occurs_in:(EMAPA:17544)
  • regulates_o_occurs_in:(CL:0000117)

Seeded From UniProt

complete

enables

GO:0008022

protein C-terminus binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

F

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

PMID:18178558[13]

ECO:0000314

direct assay evidence used in manual assertion

C

part_of:(CL:0002225)

Seeded From UniProt

complete

colocalizes_with

GO:0005886

plasma membrane

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

C

Seeded From UniProt

complete

part_of

GO:0005882

intermediate filament

PMID:8188282[14]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005882

intermediate filament

PMID:2493000[15]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005882

intermediate filament

PMID:20103531[16]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005882

intermediate filament

PMID:17882221[17]

ECO:0000314

direct assay evidence used in manual assertion

C

  • part_of:(EMAPA:17972)
  • part_of:(CL:0000499)

Seeded From UniProt

complete

part_of

GO:0005882

intermediate filament

PMID:15037121[3]

ECO:0000314

direct assay evidence used in manual assertion

C

part_of:(EMAPA:17841)

Seeded From UniProt

complete

part_of

GO:0005882

intermediate filament

PMID:11487638[9]

ECO:0000314

direct assay evidence used in manual assertion

C

  • part_of:(EMAPA:17577)
  • part_of:(CL:0000127)

Seeded From UniProt

complete

part_of

GO:0005882

intermediate filament

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

C

Seeded From UniProt

complete

part_of

GO:0005856

cytoskeleton

PMID:16769727[18]

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

C

Seeded From UniProt

complete

part_of

GO:0005856

cytoskeleton

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:621646

C

Seeded From UniProt

complete

part_of

GO:0005844

polysome

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

C

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

C

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:621646

C

Seeded From UniProt

complete

part_of

GO:0005777

peroxisome

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:15965470[19]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P08670

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:621646

C

Seeded From UniProt

complete

part_of

GO:1990904

ribonucleoprotein complex

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P08670
ensembl:ENSP00000446007

C

Seeded From UniProt

complete

enables

GO:1990254

keratin filament binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P08670
ensembl:ENSP00000446007

F

Seeded From UniProt

complete

enables

GO:0097110

scaffold protein binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P08670
ensembl:ENSP00000446007

F

Seeded From UniProt

complete

involved_in

GO:0071225

cellular response to muramyl dipeptide

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P08670
ensembl:ENSP00000446007

P

Seeded From UniProt

complete

involved_in

GO:0071222

cellular response to lipopolysaccharide

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P08670
ensembl:ENSP00000446007

P

Seeded From UniProt

complete

involved_in

GO:0045727

positive regulation of translation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P08670
ensembl:ENSP00000446007

P

Seeded From UniProt

complete

involved_in

GO:0043488

regulation of mRNA stability

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P08670
ensembl:ENSP00000446007

P

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P08670
ensembl:ENSP00000446007

F

Seeded From UniProt

complete

involved_in

GO:0032967

positive regulation of collagen biosynthetic process

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P08670
ensembl:ENSP00000446007

P

Seeded From UniProt

complete

enables

GO:0019904

protein domain specific binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P08670
ensembl:ENSP00000446007

F

Seeded From UniProt

complete

part_of

GO:0005882

intermediate filament

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P08670
ensembl:ENSP00000446007

C

Seeded From UniProt

complete

part_of

GO:0005856

cytoskeleton

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P08670
ensembl:ENSP00000446007

C

Seeded From UniProt

complete

part_of

GO:0005844

polysome

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P08670
ensembl:ENSP00000446007

C

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P08670
ensembl:ENSP00000446007

C

Seeded From UniProt

complete

part_of

GO:0005777

peroxisome

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P08670
ensembl:ENSP00000446007

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P08670
ensembl:ENSP00000446007

C

Seeded From UniProt

complete

enables

GO:0005200

structural constituent of cytoskeleton

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P08670
ensembl:ENSP00000446007

F

Seeded From UniProt

complete

enables

GO:0003725

double-stranded RNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P08670
ensembl:ENSP00000446007

F

Seeded From UniProt

complete

enables

GO:0005198

structural molecule activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001664

F

Seeded From UniProt

complete

part_of

GO:0005882

intermediate filament

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001664
InterPro:IPR006821
InterPro:IPR027699

C

Seeded From UniProt

complete

part_of

GO:0045098

type III intermediate filament

PMID:12177195[4]

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005882

intermediate filament

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0403

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539

C

Seeded From UniProt

complete

part_of

GO:0005856

cytoskeleton

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0206
UniProtKB-SubCell:SL-0090

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

part_of

GO:0016363

nuclear matrix

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0181

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Helfand, BT et al. (2011) Vimentin organization modulates the formation of lamellipodia. Mol. Biol. Cell 22 1274-89 PubMed GONUTS page
  2. Keuschnigg, J et al. (2009) The prototype endothelial marker PAL-E is a leukocyte trafficking molecule. Blood 114 478-84 PubMed GONUTS page
  3. 3.0 3.1 3.2 Sandilands, A et al. (2004) Bfsp2 mutation found in mouse 129 strains causes the loss of CP49' and induces vimentin-dependent changes in the lens fibre cell cytoskeleton. Exp. Eye Res. 78 875-89 PubMed GONUTS page
  4. 4.0 4.1 4.2 Takemura, M et al. (2002) Protective role of phosphorylation in turnover of glial fibrillary acidic protein in mice. J. Neurosci. 22 6972-9 PubMed GONUTS page
  5. Watanabe, A et al. (2011) Raftlin is involved in the nucleocapture complex to induce poly(I:C)-mediated TLR3 activation. J. Biol. Chem. 286 10702-11 PubMed GONUTS page
  6. 6.0 6.1 Trost, M et al. (2009) The phagosomal proteome in interferon-gamma-activated macrophages. Immunity 30 143-54 PubMed GONUTS page
  7. Redshaw, N et al. (2013) TGF-β/Smad2/3 signaling directly regulates several miRNAs in mouse ES cells and early embryos. PLoS ONE 8 e55186 PubMed GONUTS page
  8. Giménez Y Ribotta, M et al. (2000) Comparative anatomy of the cerebellar cortex in mice lacking vimentin, GFAP, and both vimentin and GFAP. Glia 31 69-83 PubMed GONUTS page
  9. 9.0 9.1 9.2 9.3 Menet, V et al. (2001) Inactivation of the glial fibrillary acidic protein gene, but not that of vimentin, improves neuronal survival and neurite growth by modifying adhesion molecule expression. J. Neurosci. 21 6147-58 PubMed GONUTS page
  10. Yang, P et al. (2005) A disintegrin and metalloprotease 21 (ADAM21) is associated with neurogenesis and axonal growth in developing and adult rodent CNS. J. Comp. Neurol. 490 163-79 PubMed GONUTS page
  11. Ha, BK & King, JS (2000) Localization of gp130 in the developing and adult mouse cerebellum. J. Chem. Neuroanat. 19 129-41 PubMed GONUTS page
  12. 12.0 12.1 Tao, H et al. (2005) A dual role of FGF10 in proliferation and coordinated migration of epithelial leading edge cells during mouse eyelid development. Development 132 3217-30 PubMed GONUTS page
  13. Wyatt, K et al. (2008) A role for lengsin, a recruited enzyme, in terminal differentiation in the vertebrate lens. J. Biol. Chem. 283 6607-15 PubMed GONUTS page
  14. Engle, LJ & Kennett, RH (1994) Cloning, analysis, and chromosomal localization of myoxin (MYH12), the human homologue to the mouse dilute gene. Genomics 19 407-16 PubMed GONUTS page
  15. Monteiro, MJ & Cleveland, DW (1989) Expression of NF-L and NF-M in fibroblasts reveals coassembly of neurofilament and vimentin subunits. J. Cell Biol. 108 579-93 PubMed GONUTS page
  16. Greene, SB et al. (2010) A putative role for microRNA-205 in mammary epithelial cell progenitors. J. Cell. Sci. 123 606-18 PubMed GONUTS page
  17. Seandel, M et al. (2007) Generation of functional multipotent adult stem cells from GPR125+ germline progenitors. Nature 449 346-50 PubMed GONUTS page
  18. Stefansson, B & Brautigan, DL (2006) Protein phosphatase 6 subunit with conserved Sit4-associated protein domain targets IkappaBepsilon. J. Biol. Chem. 281 22624-34 PubMed GONUTS page
  19. Eiraku, M et al. (2005) DNER acts as a neuron-specific Notch ligand during Bergmann glial development. Nat. Neurosci. 8 873-80 PubMed GONUTS page