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MOUSE:VIME
Contents
Species (Taxon ID) | Mus musculus (Mouse). (10090) | |
Gene Name(s) | Vim | |
Protein Name(s) | Vimentin | |
External Links | ||
UniProt | P20152 | |
EMBL | M24849 X56397 M26251 Z22526 X51438 Y07738 AK033175 D50805 | |
CCDS | CCDS15696.1 | |
PIR | A43803 | |
RefSeq | NP_035831.2 | |
UniGene | Mm.268000 | |
ProteinModelPortal | P20152 | |
SMR | P20152 | |
BioGrid | 204524 | |
DIP | DIP-188N | |
IntAct | P20152 | |
MINT | MINT-1202726 | |
PhosphoSite | P20152 | |
REPRODUCTION-2DPAGE | IPI00227299 | |
SWISS-2DPAGE | P20152 | |
UCD-2DPAGE | P20152 | |
MaxQB | P20152 | |
PaxDb | P20152 | |
PRIDE | P20152 | |
Ensembl | ENSMUST00000028062 | |
GeneID | 22352 | |
KEGG | mmu:22352 | |
UCSC | uc008ikb.2 | |
CTD | 7431 | |
MGI | MGI:98932 | |
eggNOG | NOG146769 | |
HOGENOM | HOG000230977 | |
HOVERGEN | HBG013015 | |
InParanoid | P20152 | |
KO | K07606 | |
OMA | INTEFKA | |
PhylomeDB | P20152 | |
TreeFam | TF330122 | |
Reactome | REACT_210562 REACT_232053 | |
ChiTaRS | Vim | |
NextBio | 302643 | |
PRO | PR:P20152 | |
Proteomes | UP000000589 | |
Bgee | P20152 | |
CleanEx | MM_VIM | |
ExpressionAtlas | P20152 | |
Genevestigator | P20152 | |
GO | GO:0031252 GO:0042995 GO:0005737 GO:0005856 GO:0005829 GO:0070062 GO:0005882 GO:0043005 GO:0005777 GO:0005886 GO:0045098 GO:0003725 GO:0005200 GO:0005212 GO:0005198 GO:0014002 GO:0060020 GO:0045109 GO:0045103 GO:0070307 GO:0010977 GO:0010628 GO:0060395 | |
InterPro | IPR001664 IPR006821 IPR018039 IPR027699 | |
PANTHER | PTHR23239 PTHR23239:SF27 | |
Pfam | PF00038 PF04732 | |
PROSITE | PS00226 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0010762 |
regulation of fibroblast migration |
ECO:0000315 |
P |
Vimentin involvement in lamellipodia formation was inferred from silencing experiments. |
complete | |||||
involved_in |
GO:0071225 |
cellular response to muramyl dipeptide |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0071222 |
cellular response to lipopolysaccharide |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0010628 |
positive regulation of gene expression |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
has_input:(UniProtKB:Q91VC4) |
Seeded From UniProt |
complete | ||
enables |
GO:0005212 |
structural constituent of eye lens |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
occurs_in:(EMAPA:17841) |
Seeded From UniProt |
complete | ||
enables |
GO:0005200 |
structural constituent of cytoskeleton |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0005198 |
structural molecule activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1931877 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003725 |
double-stranded RNA binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:1990904 |
ribonucleoprotein complex |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:1990254 |
keratin filament binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:1900147 |
regulation of Schwann cell migration |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:621646 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0097110 |
scaffold protein binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0071346 |
cellular response to interferon-gamma |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0071225 |
cellular response to muramyl dipeptide |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0071222 |
cellular response to lipopolysaccharide |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0070307 |
lens fiber cell development |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
occurs_in:(EMAPA:17841) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0060395 |
SMAD protein signal transduction |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0060252 |
positive regulation of glial cell proliferation |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:621646 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0060020 |
Bergmann glial cell differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1931877 |
P |
|
Seeded From UniProt |
complete | |
enables |
GO:0051721 |
protein phosphatase 2A binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:621646 |
F |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0050770 |
regulation of axonogenesis |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:621646 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0048471 |
perinuclear region of cytoplasm |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:621646 |
C |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045727 |
positive regulation of translation |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0045335 |
phagocytic vesicle |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045109 |
intermediate filament organization |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:95697 |
P |
|
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0045103 |
intermediate filament-based process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:1931877 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0044297 |
cell body |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:621646 |
C |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0043488 |
regulation of mRNA stability |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0043005 |
neuron projection |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
part_of:(EMAPA:32804) |
Seeded From UniProt |
complete | ||
part_of |
GO:0042995 |
cell projection |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
part_of:(CL:0000644) |
Seeded From UniProt |
complete | ||
part_of |
GO:0042995 |
cell projection |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:621646 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0042802 |
identical protein binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0032967 |
positive regulation of collagen biosynthetic process |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0031252 |
cell leading edge |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
part_of:(CL:0000362) |
Seeded From UniProt |
complete | ||
part_of |
GO:0031252 |
cell leading edge |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
part_of:(CL:0000066) |
Seeded From UniProt |
complete | ||
part_of |
GO:0030424 |
axon |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:621646 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0019904 |
protein domain specific binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0019901 |
protein kinase binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:621646 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0019900 |
kinase binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:621646 |
F |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0014002 |
astrocyte development |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:95697 |
P |
|
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0010977 |
negative regulation of neuron projection development |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:95697 |
P |
|
Seeded From UniProt |
complete | |
enables |
GO:0008022 |
protein C-terminus binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005886 |
plasma membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
part_of:(CL:0002225) |
Seeded From UniProt |
complete | ||
colocalizes_with |
GO:0005886 |
plasma membrane |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005882 |
intermediate filament |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005882 |
intermediate filament |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005882 |
intermediate filament |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005882 |
intermediate filament |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
|
Seeded From UniProt |
complete | ||
part_of |
GO:0005882 |
intermediate filament |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
part_of:(EMAPA:17841) |
Seeded From UniProt |
complete | ||
part_of |
GO:0005882 |
intermediate filament |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
|
Seeded From UniProt |
complete | ||
part_of |
GO:0005882 |
intermediate filament |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005856 |
cytoskeleton |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005856 |
cytoskeleton |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:621646 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005844 |
polysome |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005829 |
cytosol |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005829 |
cytosol |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:621646 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005777 |
peroxisome |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:621646 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:1990904 |
ribonucleoprotein complex |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08670 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:1990254 |
keratin filament binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08670 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0097110 |
scaffold protein binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08670 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0071225 |
cellular response to muramyl dipeptide |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08670 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0071222 |
cellular response to lipopolysaccharide |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08670 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045727 |
positive regulation of translation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08670 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0043488 |
regulation of mRNA stability |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08670 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0042802 |
identical protein binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08670 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0032967 |
positive regulation of collagen biosynthetic process |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08670 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0019904 |
protein domain specific binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08670 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005882 |
intermediate filament |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08670 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005856 |
cytoskeleton |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08670 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005844 |
polysome |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08670 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005829 |
cytosol |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08670 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005777 |
peroxisome |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08670 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08670 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0005200 |
structural constituent of cytoskeleton |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08670 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003725 |
double-stranded RNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P08670 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0005198 |
structural molecule activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005882 |
intermediate filament |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0045098 |
type III intermediate filament |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005882 |
intermediate filament |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005856 |
cytoskeleton |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0016363 |
nuclear matrix |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Helfand, BT et al. (2011) Vimentin organization modulates the formation of lamellipodia. Mol. Biol. Cell 22 1274-89 PubMed GONUTS page
- ↑ Keuschnigg, J et al. (2009) The prototype endothelial marker PAL-E is a leukocyte trafficking molecule. Blood 114 478-84 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 Sandilands, A et al. (2004) Bfsp2 mutation found in mouse 129 strains causes the loss of CP49' and induces vimentin-dependent changes in the lens fibre cell cytoskeleton. Exp. Eye Res. 78 875-89 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 Takemura, M et al. (2002) Protective role of phosphorylation in turnover of glial fibrillary acidic protein in mice. J. Neurosci. 22 6972-9 PubMed GONUTS page
- ↑ Watanabe, A et al. (2011) Raftlin is involved in the nucleocapture complex to induce poly(I:C)-mediated TLR3 activation. J. Biol. Chem. 286 10702-11 PubMed GONUTS page
- ↑ 6.0 6.1 Trost, M et al. (2009) The phagosomal proteome in interferon-gamma-activated macrophages. Immunity 30 143-54 PubMed GONUTS page
- ↑ Redshaw, N et al. (2013) TGF-β/Smad2/3 signaling directly regulates several miRNAs in mouse ES cells and early embryos. PLoS ONE 8 e55186 PubMed GONUTS page
- ↑ Giménez Y Ribotta, M et al. (2000) Comparative anatomy of the cerebellar cortex in mice lacking vimentin, GFAP, and both vimentin and GFAP. Glia 31 69-83 PubMed GONUTS page
- ↑ 9.0 9.1 9.2 9.3 Menet, V et al. (2001) Inactivation of the glial fibrillary acidic protein gene, but not that of vimentin, improves neuronal survival and neurite growth by modifying adhesion molecule expression. J. Neurosci. 21 6147-58 PubMed GONUTS page
- ↑ Yang, P et al. (2005) A disintegrin and metalloprotease 21 (ADAM21) is associated with neurogenesis and axonal growth in developing and adult rodent CNS. J. Comp. Neurol. 490 163-79 PubMed GONUTS page
- ↑ Ha, BK & King, JS (2000) Localization of gp130 in the developing and adult mouse cerebellum. J. Chem. Neuroanat. 19 129-41 PubMed GONUTS page
- ↑ 12.0 12.1 Tao, H et al. (2005) A dual role of FGF10 in proliferation and coordinated migration of epithelial leading edge cells during mouse eyelid development. Development 132 3217-30 PubMed GONUTS page
- ↑ Wyatt, K et al. (2008) A role for lengsin, a recruited enzyme, in terminal differentiation in the vertebrate lens. J. Biol. Chem. 283 6607-15 PubMed GONUTS page
- ↑ Engle, LJ & Kennett, RH (1994) Cloning, analysis, and chromosomal localization of myoxin (MYH12), the human homologue to the mouse dilute gene. Genomics 19 407-16 PubMed GONUTS page
- ↑ Monteiro, MJ & Cleveland, DW (1989) Expression of NF-L and NF-M in fibroblasts reveals coassembly of neurofilament and vimentin subunits. J. Cell Biol. 108 579-93 PubMed GONUTS page
- ↑ Greene, SB et al. (2010) A putative role for microRNA-205 in mammary epithelial cell progenitors. J. Cell. Sci. 123 606-18 PubMed GONUTS page
- ↑ Seandel, M et al. (2007) Generation of functional multipotent adult stem cells from GPR125+ germline progenitors. Nature 449 346-50 PubMed GONUTS page
- ↑ Stefansson, B & Brautigan, DL (2006) Protein phosphatase 6 subunit with conserved Sit4-associated protein domain targets IkappaBepsilon. J. Biol. Chem. 281 22624-34 PubMed GONUTS page
- ↑ Eiraku, M et al. (2005) DNER acts as a neuron-specific Notch ligand during Bergmann glial development. Nat. Neurosci. 8 873-80 PubMed GONUTS page
c
- GO:0071346 ! cellular response to type II interferon
- GO:0071225 ! cellular response to muramyl dipeptide
- GO:0071222 ! cellular response to lipopolysaccharide
- GO:0044297 ! cell body
- GO:0031252 ! cell leading edge
- GO:0042995 ! cell projection
- Chordata
- Craniata
- GO:0005737 ! cytoplasm
- GO:0005856 ! cytoskeleton
- GO:0005829 ! cytosol
g
i
n
p
- GO:0048471 ! perinuclear region of cytoplasm
- GO:0005777 ! peroxisome
- GO:0045335 ! phagocytic vesicle
- GO:0005886 ! plasma membrane
- GO:0032967 ! positive regulation of collagen biosynthetic process
- GO:0045727 ! positive regulation of translation
- GO:0060252 ! positive regulation of glial cell proliferation
- GO:0010628 ! positive regulation of gene expression
- GO:0019904 ! protein domain specific binding
- GO:0019901 ! protein kinase binding
- GO:0051721 ! protein phosphatase 2A binding
r
s