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MOUSE:SIX3
Contents
Species (Taxon ID) | Mus musculus (Mouse). (10090) | |
Gene Name(s) | Six3 | |
Protein Name(s) | Homeobox protein SIX3
Sine oculis homeobox homolog 3 | |
External Links | ||
UniProt | Q62233 | |
EMBL | X90871 D83144 D83145 BC098096 | |
CCDS | CCDS50203.1 | |
PIR | S74255 | |
RefSeq | NP_035511.2 | |
UniGene | Mm.370208 Mm.391586 | |
ProteinModelPortal | Q62233 | |
SMR | Q62233 | |
BioGrid | 203261 | |
DIP | DIP-46499N | |
IntAct | Q62233 | |
STRING | 10090.ENSMUSP00000039867 | |
PhosphoSite | Q62233 | |
MaxQB | Q62233 | |
PRIDE | Q62233 | |
Ensembl | ENSMUST00000175898 ENSMUST00000176081 | |
GeneID | 20473 | |
KEGG | mmu:20473 | |
UCSC | uc008dtz.2 | |
CTD | 6496 | |
MGI | MGI:102764 | |
eggNOG | NOG244436 | |
GeneTree | ENSGT00540000070251 | |
HOVERGEN | HBG003609 | |
InParanoid | Q62233 | |
TreeFam | TF315545 | |
NextBio | 298587 | |
PRO | PR:Q62233 | |
Proteomes | UP000000589 | |
Bgee | Q62233 | |
ExpressionAtlas | Q62233 | |
Genevestigator | Q62233 | |
GO | GO:0005634 GO:0003677 GO:0042826 GO:0000980 GO:0003705 GO:0001205 GO:0043565 GO:0003700 GO:0003713 GO:0001222 GO:1902742 GO:0007420 GO:0043010 GO:0021846 GO:0048512 GO:0021536 GO:0002070 GO:0001654 GO:0021797 GO:0021798 GO:0002088 GO:1990086 GO:0070306 GO:0060235 GO:0045665 GO:0045892 GO:0030178 GO:0014016 GO:0097402 GO:0003404 GO:0021983 GO:0045944 GO:0006606 GO:0000060 GO:0009946 GO:1901987 GO:0042127 GO:2000177 GO:0061074 GO:1902692 GO:0021537 GO:0021978 GO:0006366 | |
Gene3D | 1.10.10.60 | |
InterPro | IPR001356 IPR009057 | |
Pfam | PF00046 | |
SMART | SM00389 | |
SUPFAM | SSF46689 | |
PROSITE | PS50071 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0002088 |
lens development in camera-type eye |
ECO:0000315 |
P |
Fig 1H,k,l |
complete | |||||
GO:0010628 |
positive regulation of gene expression |
ECO:0000315 |
P |
Fig 3c'+D' |
complete | |||||
GO:0035326 |
enhancer binding |
ECO:0000314 |
F |
Fig 7A |
complete | |||||
GO:0043193 |
positive regulation of gene-specific transcription |
ECO:0000314 |
P |
Fig 7c |
complete | |||||
GO:0016563 |
transcription activator activity |
ECO:0000314 |
F |
Fig 7c |
complete | |||||
GO:0046619 |
optic placode formation involved in camera-type eye |
ECO:0000315 |
P |
Fig 4A',b'+j |
complete | |||||
involved_in |
GO:0021798 |
forebrain dorsal/ventral pattern formation |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0002088 |
lens development in camera-type eye |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045665 |
negative regulation of neuron differentiation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:2000177 |
regulation of neural precursor cell proliferation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0042826 |
histone deacetylase binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0001222 |
transcription corepressor binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003713 |
transcription coactivator activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0070306 |
lens fiber cell differentiation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1990086 |
lens fiber cell apoptotic process |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0061074 |
regulation of neural retina development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0042127 |
regulation of cell population proliferation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0021983 |
pituitary gland development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0014016 |
neuroblast differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1901987 |
regulation of cell cycle phase transition |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003700 |
DNA-binding transcription factor activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:1902692 |
regulation of neuroblast proliferation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0097402 |
neuroblast migration |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0002070 |
epithelial cell maturation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0021978 |
telencephalon regionalization |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1902742 |
apoptotic process involved in development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0021846 |
cell proliferation in forebrain |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0021537 |
telencephalon development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009946 |
proximal/distal axis specification |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0003404 |
optic vesicle morphogenesis |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
has_regulation_target:(NCBI_Gene:18508) |
Seeded From UniProt |
complete | ||
enables |
GO:0001228 |
DNA-binding transcription activator activity, RNA polymerase II-specific |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
occurs_at:(SO:0000165) |
Seeded From UniProt |
complete | ||
enables |
GO:0000980 |
RNA polymerase II distal enhancer sequence-specific DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0048856 |
anatomical structure development |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:102780 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:102764 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007420 |
brain development |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:102764 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005667 |
transcription factor complex |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:102780 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0003460 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0001654 |
eye development |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:102764 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0000981 |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000044272 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000976 |
transcription regulatory region sequence-specific DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000044272 |
F |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0060235 |
lens induction in camera-type eye |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:3693322 |
P |
has_participant:(EMAPA:16799) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0048512 |
circadian behavior |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:3693321 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
has_regulation_target:(MGI:MGI:97490)|has_regulation_target:(MGI:MGI:98364) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:620909 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_input:(MGI:MGI:88105) |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0043010 |
camera-type eye development |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:97490 |
P |
results_in_development_of:(EMAPA:17163) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0030178 |
negative regulation of Wnt signaling pathway |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:2450901 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0021798 |
forebrain dorsal/ventral pattern formation |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0021797 |
forebrain anterior/posterior pattern specification |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:98953 |
P |
has_participant:(EMAPA:16641) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0021797 |
forebrain anterior/posterior pattern specification |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:2450901 |
P |
has_participant:(EMAPA:16512) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0021537 |
telencephalon development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:2450901 |
P |
results_in_development_of:(EMAPA:16652) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0021536 |
diencephalon development |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
MGI:MGI:98953 |
P |
results_in_development_of:(EMAPA:16641) |
Seeded From UniProt |
complete | |
acts_upstream_of_or_within |
GO:0007420 |
brain development |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
MGI:MGI:2450901 |
P |
Seeded From UniProt |
complete | ||
acts_upstream_of_or_within |
GO:0006606 |
protein import into nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
has_participant:(MGI:MGI:109344) |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
|
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0005102 |
signaling receptor binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
RGD:620909 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0001654 |
eye development |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
acts_upstream_of_or_within |
GO:0001654 |
eye development |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0001222 |
transcription corepressor binding |
ECO:0000266 |
sequence orthology evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0000981 |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
has_regulation_target:(MGI:MGI:97490)|has_regulation_target:(MGI:MGI:98364) |
Seeded From UniProt |
complete | ||
enables |
GO:0000981 |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:O95343 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0021798 |
forebrain dorsal/ventral pattern formation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:O95343 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0001654 |
eye development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:O95343 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0001222 |
transcription corepressor binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:O95343 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045892 |
negative regulation of transcription, DNA-templated |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:A0A0G2K2C0 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0005102 |
signaling receptor binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:A0A0G2K2C0 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000981 |
DNA-binding transcription factor activity, RNA polymerase II-specific |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0001654 |
eye development |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006355 |
regulation of transcription, DNA-templated |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007420 |
brain development |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007275 |
multicellular organism development |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 Liu, W et al. (2006) Six3 activation of Pax6 expression is essential for mammalian lens induction and specification. EMBO J. 25 5383-95 PubMed GONUTS page
- ↑ 2.0 2.1 Lengler, J et al. (2001) Antagonistic action of Six3 and Prox1 at the gamma-crystallin promoter. Nucleic Acids Res. 29 515-26 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 Appolloni, I et al. (2008) Six3 controls the neural progenitor status in the murine CNS. Cereb. Cortex 18 553-62 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 4.3 Manavathi, B et al. (2007) Repression of Six3 by a corepressor regulates rhodopsin expression. Proc. Natl. Acad. Sci. U.S.A. 104 13128-33 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 Goudreau, G et al. (2002) Mutually regulated expression of Pax6 and Six3 and its implications for the Pax6 haploinsufficient lens phenotype. Proc. Natl. Acad. Sci. U.S.A. 99 8719-24 PubMed GONUTS page
- ↑ Liu, W et al. (2010) Neuroretina specification in mouse embryos requires Six3-mediated suppression of Wnt8b in the anterior neural plate. J. Clin. Invest. 120 3568-77 PubMed GONUTS page
- ↑ 7.0 7.1 Gaston-Massuet, C et al. (2008) Genetic interaction between the homeobox transcription factors HESX1 and SIX3 is required for normal pituitary development. Dev. Biol. 324 322-33 PubMed GONUTS page
- ↑ 8.0 8.1 8.2 8.3 Lavado, A & Oliver, G (2011) Six3 is required for ependymal cell maturation. Development 138 5291-300 PubMed GONUTS page
- ↑ 9.0 9.1 9.2 9.3 Geng, X et al. (2008) Haploinsufficiency of Six3 fails to activate Sonic hedgehog expression in the ventral forebrain and causes holoprosencephaly. Dev. Cell 15 236-47 PubMed GONUTS page
- ↑ Carl, M et al. (2002) Six3 inactivation reveals its essential role for the formation and patterning of the vertebrate eye. Development 129 4057-63 PubMed GONUTS page
- ↑ Lagutin, O et al. (2001) Six3 promotes the formation of ectopic optic vesicle-like structures in mouse embryos. Dev. Dyn. 221 342-9 PubMed GONUTS page
- ↑ 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ VanDunk, C et al. (2011) Development, maturation, and necessity of transcription factors in the mouse suprachiasmatic nucleus. J. Neurosci. 31 6457-67 PubMed GONUTS page
- ↑ 14.0 14.1 14.2 14.3 Zhu, CC et al. (2002) Six3-mediated auto repression and eye development requires its interaction with members of the Groucho-related family of co-repressors. Development 129 2835-49 PubMed GONUTS page
- ↑ 15.0 15.1 Kawakami, K et al. (1996) Identification and expression of six family genes in mouse retina. FEBS Lett. 393 259-63 PubMed GONUTS page
- ↑ 16.0 16.1 16.2 Lagutin, OV et al. (2003) Six3 repression of Wnt signaling in the anterior neuroectoderm is essential for vertebrate forebrain development. Genes Dev. 17 368-79 PubMed GONUTS page
- ↑ 17.0 17.1 17.2 17.3 Lavado, A et al. (2008) Six3 inactivation causes progressive caudalization and aberrant patterning of the mammalian diencephalon. Development 135 441-50 PubMed GONUTS page
- ↑ 18.0 18.1 Purcell, P et al. (2005) Pax6-dependence of Six3, Eya1 and Dach1 expression during lens and nasal placode induction. Gene Expr. Patterns 6 110-8 PubMed GONUTS page
a
c
d
e
f
g
l
m
n
p
- GO:0021983 ! pituitary gland development
- GO:0010628 ! positive regulation of gene expression
- GO:0043193 ! positive regulation of gene-specific transcription
- GO:0045944 ! positive regulation of transcription by RNA polymerase II
- GO:0006606 ! protein import into nucleus
- GO:0009946 ! proximal/distal axis specification
r
- GO:0006355 ! regulation of DNA-templated transcription
- GO:2000177 ! regulation of neural precursor cell proliferation
- GO:0061074 ! regulation of neural retina development
- GO:0042127 ! regulation of cell population proliferation
- GO:1902692 ! regulation of neuroblast proliferation
- GO:1901987 ! regulation of cell cycle phase transition
- GO:0000980 ! RNA polymerase II distal enhancer sequence-specific DNA binding
- Rodentia
t