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MOUSE:SIX3

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Species (Taxon ID) Mus musculus (Mouse). (10090)
Gene Name(s) Six3
Protein Name(s) Homeobox protein SIX3

Sine oculis homeobox homolog 3

External Links
UniProt Q62233
EMBL X90871
D83144
D83145
BC098096
CCDS CCDS50203.1
PIR S74255
RefSeq NP_035511.2
UniGene Mm.370208
Mm.391586
ProteinModelPortal Q62233
SMR Q62233
BioGrid 203261
DIP DIP-46499N
IntAct Q62233
STRING 10090.ENSMUSP00000039867
PhosphoSite Q62233
MaxQB Q62233
PRIDE Q62233
Ensembl ENSMUST00000175898
ENSMUST00000176081
GeneID 20473
KEGG mmu:20473
UCSC uc008dtz.2
CTD 6496
MGI MGI:102764
eggNOG NOG244436
GeneTree ENSGT00540000070251
HOVERGEN HBG003609
InParanoid Q62233
TreeFam TF315545
NextBio 298587
PRO PR:Q62233
Proteomes UP000000589
Bgee Q62233
ExpressionAtlas Q62233
Genevestigator Q62233
GO GO:0005634
GO:0003677
GO:0042826
GO:0000980
GO:0003705
GO:0001205
GO:0043565
GO:0003700
GO:0003713
GO:0001222
GO:1902742
GO:0007420
GO:0043010
GO:0021846
GO:0048512
GO:0021536
GO:0002070
GO:0001654
GO:0021797
GO:0021798
GO:0002088
GO:1990086
GO:0070306
GO:0060235
GO:0045665
GO:0045892
GO:0030178
GO:0014016
GO:0097402
GO:0003404
GO:0021983
GO:0045944
GO:0006606
GO:0000060
GO:0009946
GO:1901987
GO:0042127
GO:2000177
GO:0061074
GO:1902692
GO:0021537
GO:0021978
GO:0006366
Gene3D 1.10.10.60
InterPro IPR001356
IPR009057
Pfam PF00046
SMART SM00389
SUPFAM SSF46689
PROSITE PS50071

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0002088

lens development in camera-type eye

PMID:17066077[1]

ECO:0000315

P

Fig 1H,k,l

complete

GO:0010628

positive regulation of gene expression

PMID:17066077[1]

ECO:0000315

P

Fig 3c'+D'

complete

GO:0035326

enhancer binding

PMID:17066077[1]

ECO:0000314

F

Fig 7A

complete

GO:0043193

positive regulation of gene-specific transcription

PMID:17066077[1]

ECO:0000314

P

Fig 7c

complete

GO:0016563

transcription activator activity

PMID:17066077[1]

ECO:0000314

F

Fig 7c

complete

GO:0046619

optic placode formation involved in camera-type eye

PMID:17066077[1]

ECO:0000315

P

Fig 4A',b'+j

complete

involved_in

GO:0021798

forebrain dorsal/ventral pattern formation

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:O95343

P

Seeded From UniProt

complete

involved_in

GO:0002088

lens development in camera-type eye

PMID:11139622[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045892

negative regulation of transcription, DNA-templated

PMID:11139622[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045665

negative regulation of neuron differentiation

PMID:17576749[3]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:2000177

regulation of neural precursor cell proliferation

PMID:17576749[3]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0042826

histone deacetylase binding

PMID:17666527[4]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P70288

F

Seeded From UniProt

complete

enables

GO:0001222

transcription corepressor binding

PMID:17666527[4]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q8K4B0

F

Seeded From UniProt

complete

enables

GO:0003713

transcription coactivator activity

PMID:17666527[4]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0070306

lens fiber cell differentiation

PMID:12072567[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:1990086

lens fiber cell apoptotic process

PMID:12072567[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0061074

regulation of neural retina development

PMID:20890044[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0042127

regulation of cell population proliferation

PMID:18775421[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0021983

pituitary gland development

PMID:18775421[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0014016

neuroblast differentiation

PMID:22071110[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:1901987

regulation of cell cycle phase transition

PMID:17576749[3]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0003700

DNA-binding transcription factor activity

PMID:17666527[4]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:1902692

regulation of neuroblast proliferation

PMID:22071110[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0097402

neuroblast migration

PMID:22071110[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0002070

epithelial cell maturation

PMID:22071110[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0021978

telencephalon regionalization

PMID:18694563[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:1902742

apoptotic process involved in development

PMID:18694563[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0021846

cell proliferation in forebrain

PMID:18694563[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0021537

telencephalon development

PMID:18694563[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0009946

proximal/distal axis specification

PMID:12163408[10]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0003404

optic vesicle morphogenesis

PMID:11458394[11]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:17066077[1]

ECO:0000314

direct assay evidence used in manual assertion

P

has_regulation_target:(NCBI_Gene:18508)

Seeded From UniProt

complete

enables

GO:0001228

DNA-binding transcription activator activity, RNA polymerase II-specific

PMID:17066077[1]

ECO:0000314

direct assay evidence used in manual assertion

F

occurs_at:(SO:0000165)

Seeded From UniProt

complete

enables

GO:0000980

RNA polymerase II distal enhancer sequence-specific DNA binding

PMID:17066077[1]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0048856

anatomical structure development

PMID:21873635[12]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:102780
MGI:MGI:106034
PANTHER:PTN000044272

P

Seeded From UniProt

complete

involved_in

GO:0045892

negative regulation of transcription, DNA-templated

PMID:21873635[12]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:102764
MGI:MGI:106034
MGI:MGI:106220
PANTHER:PTN000044272
RGD:620909
UniProtKB:O95343

P

Seeded From UniProt

complete

involved_in

GO:0007420

brain development

PMID:21873635[12]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:102764
PANTHER:PTN002571848
ZFIN:ZDB-GENE-990415-127
ZFIN:ZDB-GENE-990415-128

P

Seeded From UniProt

complete

part_of

GO:0005667

transcription factor complex

PMID:21873635[12]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:102780
PANTHER:PTN000044272

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[12]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0003460
MGI:MGI:102764
MGI:MGI:102778
MGI:MGI:102780
MGI:MGI:106034
MGI:MGI:106220
MGI:MGI:1341840
PANTHER:PTN000044272
RGD:620906
UniProtKB:Q15475
WB:WBGene00000453
WB:WBGene00000455
WB:WBGene00006775

C

Seeded From UniProt

complete

involved_in

GO:0001654

eye development

PMID:21873635[12]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:102764
PANTHER:PTN002470536
UniProtKB:O95343
ZFIN:ZDB-GENE-050522-308
ZFIN:ZDB-GENE-990415-128
ZFIN:ZDB-GENE-990825-28

P

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

PMID:21873635[12]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000044272
ZFIN:ZDB-GENE-040718-155

F

Seeded From UniProt

complete

enables

GO:0000976

transcription regulatory region sequence-specific DNA binding

PMID:21873635[12]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000044272
dictyBase:DDB_G0272967

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0060235

lens induction in camera-type eye

PMID:17066077[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3693322

P

has_participant:(EMAPA:16799)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0048512

circadian behavior

PMID:21525287[13]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3693321

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:17066077[1]

ECO:0000314

direct assay evidence used in manual assertion

P

has_regulation_target:(MGI:MGI:97490)|has_regulation_target:(MGI:MGI:98364)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045892

negative regulation of transcription, DNA-templated

PMID:12050133[14]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045892

negative regulation of transcription, DNA-templated

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:O95343

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045892

negative regulation of transcription, DNA-templated

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620909

P

Seeded From UniProt

complete

enables

GO:0043565

sequence-specific DNA binding

PMID:8814301[15]

ECO:0000314

direct assay evidence used in manual assertion

F

has_input:(MGI:MGI:88105)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0043010

camera-type eye development

PMID:12072567[5]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:97490

P

results_in_development_of:(EMAPA:17163)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0030178

negative regulation of Wnt signaling pathway

PMID:12569128[16]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2450901

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021798

forebrain dorsal/ventral pattern formation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:O95343

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021797

forebrain anterior/posterior pattern specification

PMID:18094027[17]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:98953

P

has_participant:(EMAPA:16641)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021797

forebrain anterior/posterior pattern specification

PMID:18094027[17]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2450901

P

has_participant:(EMAPA:16512)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021537

telencephalon development

PMID:18094027[17]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2450901

P

results_in_development_of:(EMAPA:16652)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0021536

diencephalon development

PMID:18094027[17]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:98953

P

results_in_development_of:(EMAPA:16641)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007420

brain development

PMID:12569128[16]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2450901

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006606

protein import into nucleus

PMID:16024294[18]

ECO:0000314

direct assay evidence used in manual assertion

P

has_participant:(MGI:MGI:109344)

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:8814301[15]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:16024294[18]

ECO:0000314

direct assay evidence used in manual assertion

C

  • part_of:(EMAPA:16672)
  • part_of:(CL:0000114)

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:12050133[14]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0005102

signaling receptor binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620909

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

PMID:12050133[14]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001654

eye development

PMID:12050133[14]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001654

eye development

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:O95343

P

Seeded From UniProt

complete

enables

GO:0001222

transcription corepressor binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:O95343

F

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

PMID:17066077[1]

ECO:0000314

direct assay evidence used in manual assertion

F

has_regulation_target:(MGI:MGI:97490)|has_regulation_target:(MGI:MGI:98364)

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

PMID:12569128[16]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0045892

negative regulation of transcription, DNA-templated

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O95343
ensembl:ENSP00000260653

P

Seeded From UniProt

complete

involved_in

GO:0021798

forebrain dorsal/ventral pattern formation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O95343
ensembl:ENSP00000260653

P

Seeded From UniProt

complete

involved_in

GO:0001654

eye development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O95343
ensembl:ENSP00000260653

P

Seeded From UniProt

complete

enables

GO:0001222

transcription corepressor binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:O95343
ensembl:ENSP00000260653

F

Seeded From UniProt

complete

involved_in

GO:0045892

negative regulation of transcription, DNA-templated

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:A0A0G2K2C0
ensembl:ENSRNOP00000072181

P

Seeded From UniProt

complete

enables

GO:0005102

signaling receptor binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:A0A0G2K2C0
ensembl:ENSRNOP00000072181

F

Seeded From UniProt

complete

enables

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR032949

F

Seeded From UniProt

complete

involved_in

GO:0001654

eye development

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR032949

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001356
InterPro:IPR009057

F

Seeded From UniProt

complete

involved_in

GO:0006355

regulation of transcription, DNA-templated

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR032949

P

Seeded From UniProt

complete

involved_in

GO:0007420

brain development

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR032949

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037
GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0371
UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

involved_in

GO:0007275

multicellular organism development

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0217

P

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 1.11 Liu, W et al. (2006) Six3 activation of Pax6 expression is essential for mammalian lens induction and specification. EMBO J. 25 5383-95 PubMed GONUTS page
  2. 2.0 2.1 Lengler, J et al. (2001) Antagonistic action of Six3 and Prox1 at the gamma-crystallin promoter. Nucleic Acids Res. 29 515-26 PubMed GONUTS page
  3. 3.0 3.1 3.2 Appolloni, I et al. (2008) Six3 controls the neural progenitor status in the murine CNS. Cereb. Cortex 18 553-62 PubMed GONUTS page
  4. 4.0 4.1 4.2 4.3 Manavathi, B et al. (2007) Repression of Six3 by a corepressor regulates rhodopsin expression. Proc. Natl. Acad. Sci. U.S.A. 104 13128-33 PubMed GONUTS page
  5. 5.0 5.1 5.2 Goudreau, G et al. (2002) Mutually regulated expression of Pax6 and Six3 and its implications for the Pax6 haploinsufficient lens phenotype. Proc. Natl. Acad. Sci. U.S.A. 99 8719-24 PubMed GONUTS page
  6. Liu, W et al. (2010) Neuroretina specification in mouse embryos requires Six3-mediated suppression of Wnt8b in the anterior neural plate. J. Clin. Invest. 120 3568-77 PubMed GONUTS page
  7. 7.0 7.1 Gaston-Massuet, C et al. (2008) Genetic interaction between the homeobox transcription factors HESX1 and SIX3 is required for normal pituitary development. Dev. Biol. 324 322-33 PubMed GONUTS page
  8. 8.0 8.1 8.2 8.3 Lavado, A & Oliver, G (2011) Six3 is required for ependymal cell maturation. Development 138 5291-300 PubMed GONUTS page
  9. 9.0 9.1 9.2 9.3 Geng, X et al. (2008) Haploinsufficiency of Six3 fails to activate Sonic hedgehog expression in the ventral forebrain and causes holoprosencephaly. Dev. Cell 15 236-47 PubMed GONUTS page
  10. Carl, M et al. (2002) Six3 inactivation reveals its essential role for the formation and patterning of the vertebrate eye. Development 129 4057-63 PubMed GONUTS page
  11. Lagutin, O et al. (2001) Six3 promotes the formation of ectopic optic vesicle-like structures in mouse embryos. Dev. Dyn. 221 342-9 PubMed GONUTS page
  12. 12.0 12.1 12.2 12.3 12.4 12.5 12.6 12.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  13. VanDunk, C et al. (2011) Development, maturation, and necessity of transcription factors in the mouse suprachiasmatic nucleus. J. Neurosci. 31 6457-67 PubMed GONUTS page
  14. 14.0 14.1 14.2 14.3 Zhu, CC et al. (2002) Six3-mediated auto repression and eye development requires its interaction with members of the Groucho-related family of co-repressors. Development 129 2835-49 PubMed GONUTS page
  15. 15.0 15.1 Kawakami, K et al. (1996) Identification and expression of six family genes in mouse retina. FEBS Lett. 393 259-63 PubMed GONUTS page
  16. 16.0 16.1 16.2 Lagutin, OV et al. (2003) Six3 repression of Wnt signaling in the anterior neuroectoderm is essential for vertebrate forebrain development. Genes Dev. 17 368-79 PubMed GONUTS page
  17. 17.0 17.1 17.2 17.3 Lavado, A et al. (2008) Six3 inactivation causes progressive caudalization and aberrant patterning of the mammalian diencephalon. Development 135 441-50 PubMed GONUTS page
  18. 18.0 18.1 Purcell, P et al. (2005) Pax6-dependence of Six3, Eya1 and Dach1 expression during lens and nasal placode induction. Gene Expr. Patterns 6 110-8 PubMed GONUTS page