GONUTS has been updated to MW1.31 Most things seem to be working but be sure to report problems.

Have any questions? Please email us at ecoliwiki@gmail.com

MOUSE:LMNA

From GONUTS
Jump to: navigation, search
Species (Taxon ID) Mus musculus (Mouse). (10090)
Gene Name(s) Lmna (synonyms: Lmn1)
Protein Name(s) Prelamin-A/C

Lamin-A/C

External Links
UniProt P48678
EMBL D49733
D49733
D49733
X14170
D14850
DQ832702
DQ832703
AK004619
AK147150
AK149998
AK150391
AK150501
AK150624
AK152539
AK152646
AK152846
AK161221
AK167858
CH466547
BC015302
BC094020
D13181
CCDS CCDS38482.1
CCDS38483.1
CCDS50951.1
PIR I53414
S04333
S18324
S28182
RefSeq NP_001002011.2
NP_001104572.1
NP_062263.1
XP_006501136.1
UniGene Mm.243014
Mm.471227
PDB 1UFG
PDBsum 1UFG
ProteinModelPortal P48678
SMR P48678
BioGrid 201176
IntAct P48678
MINT MINT-1868521
STRING 10090.ENSMUSP00000029699
PhosphoSite P48678
REPRODUCTION-2DPAGE IPI00400300
IPI00620256
MaxQB P48678
PaxDb P48678
PRIDE P48678
Ensembl ENSMUST00000029699
ENSMUST00000036252
ENSMUST00000120377
GeneID 16905
KEGG mmu:16905
UCSC uc008pvj.2
uc008pvk.2
CTD 4000
MGI MGI:96794
eggNOG NOG325506
GeneTree ENSGT00760000118905
HOVERGEN HBG013015
InParanoid P48678
KO K12641
OMA HCSGSGD
OrthoDB EOG7MD4PW
PhylomeDB P48678
TreeFam TF101181
Reactome REACT_106572
REACT_198626
REACT_208718
REACT_209025
REACT_210180
REACT_221677
REACT_75800
ChiTaRS Lmna
EvolutionaryTrace P48678
NextBio 290934
PRO PR:P48678
Proteomes UP000000589
Bgee P48678
CleanEx MM_LMNA
ExpressionAtlas P48678
Genevestigator P48678
GO GO:0005638
GO:0005635
GO:0005654
GO:0005634
GO:0048471
GO:0005198
GO:0071456
GO:0030010
GO:0030951
GO:0007517
GO:2001237
GO:0090201
GO:0006998
GO:0006997
GO:0090343
GO:0034504
GO:0030334
GO:1900180
GO:0035105
GO:0055015
Gene3D 2.60.40.1260
InterPro IPR001664
IPR018039
IPR001322
PANTHER PTHR23239
Pfam PF00038
PF00932
SUPFAM SSF74853
PROSITE PS00226

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0005783

endoplasmic reticulum

PMID 10021336

ECO:0000314

C

Immunohistochemical staining shows location of lamin alpha to follow distribution of ER - figure 6c

Missing: reference

part_of

GO:0005634

nucleus

PMID:26436652[1]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:1903243

negative regulation of cardiac muscle hypertrophy in response to stress

PMID:26436652[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0090343

positive regulation of cell aging

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P02545

P

Seeded From UniProt

complete

involved_in

GO:0071456

cellular response to hypoxia

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P02545

P

Seeded From UniProt

complete

part_of

GO:0048471

perinuclear region of cytoplasm

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P02545-1

C

Seeded From UniProt

complete

involved_in

GO:0030951

establishment or maintenance of microtubule cytoskeleton polarity

PMID:17631533[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0030334

regulation of cell migration

PMID:17631533[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0030010

establishment of cell polarity

PMID:17631533[2]

ECO:0000303

author statement without traceable support used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007517

muscle organ development

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P02545-2

P

Seeded From UniProt

complete

involved_in

GO:0007517

muscle organ development

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P02545-1

P

Seeded From UniProt

complete

involved_in

GO:0090343

positive regulation of cell aging

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P02545

P

Seeded From UniProt

complete

involved_in

GO:0034504

protein localization to nucleus

PMID:21498514[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005635

nuclear envelope

PMID:18606848[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:2001237

negative regulation of extrinsic apoptotic signaling pathway

PMID:21151901[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:1904178

negative regulation of adipose tissue development

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620456

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:1900180

regulation of protein localization to nucleus

PMID:22349700[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:1900114

positive regulation of histone H3-K9 trimethylation

PMID:23695662[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0090343

positive regulation of cell aging

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P02545

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0090201

negative regulation of release of cytochrome c from mitochondria

PMID:21151901[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0072201

negative regulation of mesenchymal cell proliferation

PMID:22886301[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0055015

ventricular cardiac muscle cell development

PMID:14755333[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2177930

P

  • occurs_in:(EMAPA:17339)
  • results_in_development_of:(CL:0000746)

Seeded From UniProt

complete

part_of

GO:0048471

perinuclear region of cytoplasm

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P02545

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045669

positive regulation of osteoblast differentiation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620456

P

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P02545

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0034613

cellular protein localization

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P02545

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0034504

protein localization to nucleus

PMID:16339967[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2177930

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0032204

regulation of telomere maintenance

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P02545

P

Seeded From UniProt

complete

part_of

GO:0031965

nuclear membrane

PMID:17164264[11]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0031965

nuclear membrane

PMID:11092755[12]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0031647

regulation of protein stability

PMID:23695662[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0016363

nuclear matrix

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620456

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0010628

positive regulation of gene expression

PMID:22886301[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0008285

negative regulation of cell population proliferation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P02545

P

Seeded From UniProt

complete

enables

GO:0008157

protein phosphatase 1 binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620456

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007517

muscle organ development

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P02545

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006998

nuclear envelope organization

PMID:15608054[13]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1890508

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006998

nuclear envelope organization

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P02545

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006997

nucleus organization

PMID:16511604[14]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1890508

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006997

nucleus organization

PMID:14755333[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2177930

P

  • occurs_in:(EMAPA:17339)
  • occurs_in:(CL:0000746)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006606

protein import into nucleus

PMID:14755333[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2177930

P

  • occurs_in:(EMAPA:17339)
  • occurs_in:(CL:0000746)
  • has_participant:(MGI:MGI:107606)

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P02545

C

Seeded From UniProt

complete

part_of

GO:0005638

lamin filament

PMID:8032679[15]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005635

nuclear envelope

PMID:23686339[16]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005635

nuclear envelope

PMID:20457914[17]

ECO:0000314

direct assay evidence used in manual assertion

C

  • part_of:(EMAPA:17544)
  • part_of:(CL:0000540)

Seeded From UniProt

complete

part_of

GO:0005635

nuclear envelope

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P02545

C

Seeded From UniProt

complete

colocalizes_with

GO:0005635

nuclear envelope

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P02545

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:26657864[18]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:22886301[8]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:19915186[19]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:16731532[20]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:11739632[21]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:18809582[22]

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P02545

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:P02545

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:620456

C

Seeded From UniProt

complete

involved_in

GO:0090343

positive regulation of cell aging

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P02545
ensembl:ENSP00000357283

P

Seeded From UniProt

complete

involved_in

GO:0071456

cellular response to hypoxia

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P02545
ensembl:ENSP00000357283

P

Seeded From UniProt

complete

involved_in

GO:0008285

negative regulation of cell population proliferation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P02545
ensembl:ENSP00000357283

P

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P02545
ensembl:ENSP00000357283

C

Seeded From UniProt

complete

part_of

GO:0005635

nuclear envelope

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P02545
ensembl:ENSP00000357283

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P02545
ensembl:ENSP00000357283

C

Seeded From UniProt

complete

enables

GO:0005198

structural molecule activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001664

F

Seeded From UniProt

complete

part_of

GO:0005882

intermediate filament

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001664

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:18664494[23]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

Reactome:R-MMU-8868356

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005635

nuclear envelope

Reactome:R-MMU-912355

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005882

intermediate filament

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0403

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0190

C

Seeded From UniProt

complete

part_of

GO:0005652

nuclear lamina

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0180

C

Seeded From UniProt

complete

part_of

GO:0005635

nuclear envelope

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0178

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Huang, ZP et al. (2015) Cardiomyocyte-enriched protein CIP protects against pathophysiological stresses and regulates cardiac homeostasis. J. Clin. Invest. 125 4122-34 PubMed GONUTS page
  2. 2.0 2.1 2.2 Lee, JS et al. (2007) Nuclear lamin A/C deficiency induces defects in cell mechanics, polarization, and migration. Biophys. J. 93 2542-52 PubMed GONUTS page
  3. Ahmady, E et al. (2011) Identification of a novel muscle A-type lamin-interacting protein (MLIP). J. Biol. Chem. 286 19702-13 PubMed GONUTS page
  4. Zhang, YQ & Sarge, KD (2008) Sumoylation regulates lamin A function and is lost in lamin A mutants associated with familial cardiomyopathies. J. Cell Biol. 182 35-9 PubMed GONUTS page
  5. 5.0 5.1 Lu, D et al. (2010) LMNA E82K mutation activates FAS and mitochondrial pathways of apoptosis in heart tissue specific transgenic mice. PLoS ONE 5 e15167 PubMed GONUTS page
  6. Borrego-Pinto, J et al. (2012) Samp1 is a component of TAN lines and is required for nuclear movement. J. Cell. Sci. 125 1099-105 PubMed GONUTS page
  7. 7.0 7.1 Liu, B et al. (2013) Depleting the methyltransferase Suv39h1 improves DNA repair and extends lifespan in a progeria mouse model. Nat Commun 4 1868 PubMed GONUTS page
  8. 8.0 8.1 8.2 Liu, Y et al. (2012) Intracellular VEGF regulates the balance between osteoblast and adipocyte differentiation. J. Clin. Invest. 122 3101-13 PubMed GONUTS page
  9. 9.0 9.1 9.2 Nikolova, V et al. (2004) Defects in nuclear structure and function promote dilated cardiomyopathy in lamin A/C-deficient mice. J. Clin. Invest. 113 357-69 PubMed GONUTS page
  10. Brachner, A et al. (2005) LEM2 is a novel MAN1-related inner nuclear membrane protein associated with A-type lamins. J. Cell. Sci. 118 5797-810 PubMed GONUTS page
  11. Heydemann, A et al. (2007) Nuclear sequestration of delta-sarcoglycan disrupts the nuclear localization of lamin A/C and emerin in cardiomyocytes. Hum. Mol. Genet. 16 355-63 PubMed GONUTS page
  12. Hilditch-Maguire, P et al. (2000) Huntingtin: an iron-regulated protein essential for normal nuclear and perinuclear organelles. Hum. Mol. Genet. 9 2789-97 PubMed GONUTS page
  13. Fong, LG et al. (2004) Heterozygosity for Lmna deficiency eliminates the progeria-like phenotypes in Zmpste24-deficient mice. Proc. Natl. Acad. Sci. U.S.A. 101 18111-6 PubMed GONUTS page
  14. Fong, LG et al. (2006) Prelamin A and lamin A appear to be dispensable in the nuclear lamina. J. Clin. Invest. 116 743-52 PubMed GONUTS page
  15. Furukawa, K et al. (1994) cDNA cloning and functional characterization of a meiosis-specific protein (MNS1) with apparent nuclear association. Chromosome Res. 2 99-113 PubMed GONUTS page
  16. Ibrahim, MX et al. (2013) Targeting isoprenylcysteine methylation ameliorates disease in a mouse model of progeria. Science 340 1330-3 PubMed GONUTS page
  17. Kim, CE et al. (2010) A molecular mechanism underlying the neural-specific defect in torsinA mutant mice. Proc. Natl. Acad. Sci. U.S.A. 107 9861-6 PubMed GONUTS page
  18. Lagarrigue, S et al. (2016) CDK4 is an essential insulin effector in adipocytes. J. Clin. Invest. 126 335-48 PubMed GONUTS page
  19. Yamada, M et al. (2010) Involvement of a novel preimplantation-specific gene encoding the high mobility group box protein Hmgpi in early embryonic development. Hum. Mol. Genet. 19 480-93 PubMed GONUTS page
  20. Dai, FF et al. (2006) The neuronal Ca2+ sensor protein visinin-like protein-1 is expressed in pancreatic islets and regulates insulin secretion. J. Biol. Chem. 281 21942-53 PubMed GONUTS page
  21. Muralikrishna, B et al. (2001) Distinct changes in intranuclear lamin A/C organization during myoblast differentiation. J. Cell. Sci. 114 4001-11 PubMed GONUTS page
  22. Maggi, LB Jr et al. (2008) Nucleophosmin serves as a rate-limiting nuclear export chaperone for the Mammalian ribosome. Mol. Cell. Biol. 28 7050-65 PubMed GONUTS page
  23. Ojeh, N et al. (2008) The MAGUK-family protein CASK is targeted to nuclei of the basal epidermis and controls keratinocyte proliferation. J. Cell. Sci. 121 2705-17 PubMed GONUTS page