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MOUSE:HDAC6

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Species (Taxon ID) Mus musculus (Mouse). (10090)
Gene Name(s) Hdac6
Protein Name(s) Histone deacetylase 6

HD6 Histone deacetylase mHDA2

External Links
UniProt Q9Z2V5
EMBL AF006603
AL670169
CCDS CCDS40845.1
PIR T13964
RefSeq NP_001123888.1
NP_034543.3
XP_006527630.1
XP_017173877.1
XP_017173878.1
UniGene Mm.29854
ProteinModelPortal Q9Z2V5
SMR Q9Z2V5
BioGrid 200263
DIP DIP-36461N
IntAct Q9Z2V5
MINT MINT-220628
STRING 10090.ENSMUSP00000033501
BindingDB Q9Z2V5
ChEMBL CHEMBL2878
iPTMnet Q9Z2V5
PhosphoSitePlus Q9Z2V5
EPD Q9Z2V5
MaxQB Q9Z2V5
PaxDb Q9Z2V5
PeptideAtlas Q9Z2V5
PRIDE Q9Z2V5
Ensembl ENSMUST00000033501
ENSMUST00000115642
GeneID 15185
KEGG mmu:15185
UCSC uc009snh.2
CTD 10013
MGI MGI:1333752
eggNOG KOG1343
COG0123
GeneTree ENSGT00530000062809
HOGENOM HOG000004769
HOVERGEN HBG051894
InParanoid Q9Z2V5
KO K11407
OMA QPHGFCI
OrthoDB EOG091G0210
TreeFam TF106173
BRENDA 3.5.1.98
Reactome [www.reactome.org/content/detail/R-MMU-3371511 R-MMU-3371511]
[www.reactome.org/content/detail/R-MMU-5617833 R-MMU-5617833]
PRO PR:Q9Z2V5
Proteomes UP000000589
Bgee ENSMUSG00000031161
CleanEx MM_HDAC6
ExpressionAtlas Q9Z2V5
Genevisible Q9Z2V5
GO GO:0016235
GO:0030424
GO:0005901
GO:0044297
GO:0031252
GO:0005737
GO:0005829
GO:0030425
GO:0030286
GO:0000118
GO:0016234
GO:0005874
GO:0005875
GO:0043005
GO:0005654
GO:0005634
GO:0043204
GO:0048471
GO:0043234
GO:0003779
GO:0043014
GO:0008013
GO:0048487
GO:0001047
GO:0070840
GO:0004407
GO:0042826
GO:0051879
GO:0008017
GO:0051787
GO:0032041
GO:0031593
GO:0048156
GO:0042903
GO:0043130
GO:0031625
GO:0008270
GO:0070842
GO:0070301
GO:0071218
GO:0035967
GO:0048668
GO:0060997
GO:0016575
GO:0070846
GO:0006886
GO:0032418
GO:0051646
GO:0007026
GO:0043242
GO:0045861
GO:0061734
GO:0034983
GO:0070845
GO:0090035
GO:0010634
GO:1901300
GO:0098779
GO:0010870
GO:0009967
GO:0043241
GO:0006476
GO:0000209
GO:0006515
GO:0070201
GO:0045598
GO:0040029
GO:0016241
GO:0031647
GO:0010469
GO:0006355
GO:0070848
GO:0051788
GO:0010033
GO:0009636
GO:0006351
GO:0090042
GO:0006511
GO:0043162
Gene3D 3.30.40.10
3.40.800.20
InterPro IPR000286
IPR023801
IPR037138
IPR023696
IPR013083
IPR001607
PANTHER PTHR10625
Pfam PF00850
PF02148
PRINTS PR01270
SMART SM00290
SUPFAM SSF52768
PROSITE PS50271

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0031648

protein destabilization

PMID:24882211[1]

ECO:0000315

P

The organism is H. Sapiens and the protein is HDAC6 or (Histone deacetylase 6) Figure 3C shows that knockdown of HDAC6 lowers the half life of MSH2 (MutS protein homolog 2) and “As shown in Figure 3C, wild-type HDAC6 (F-HD6, lanes 17–20), not the catalytically dead mutant of HDAC6 (F-HD6DM, lanes 13–16) or the DAC1-deficient mutant of HDAC6 (F-HD6[439–1215], lanes 21–24), could reduce the half-life of MSH2. “ Thus HDAC6 destabilizes MSH2

complete
CACAO 13035

GO:0000209

protein polyubiquitination

PMID:24882211[1]

ECO:0000315

P

The Organism is Mus Musculus and the protein is HDAC6. Figure 4B shows that knocking out HDAC6 stops polyubiquitination and reintroducing wild type HDAC6 restores polyubiquitination of protein MSH2

complete
CACAO 13048

GO:0016575

histone deacetylation

PMID:24882211[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Mouse; HDAC6

According to Figure 5C, HDAC6 is involved in core histone deacetylation.

complete
CACAO 13049

GO:0004407

histone deacetylase activity

PMID:24882211[1]

ECO:0000315

F

Mouse; HDAC6

According to Figure 5C, HDAC6 is involved in core histone deacetylation.

complete
CACAO 13050

enables

GO:0042903

tubulin deacetylase activity

PMID:19457097[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

occurs_in:(CL:0000540)

Seeded From UniProt

complete

enables

GO:0048156

tau protein binding

PMID:19457097[2]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P10637

F

occurs_in:(UBERON:0000955)

Seeded From UniProt

complete

NOT|enables

GO:0047611

acetylspermidine deacetylase activity

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9UBN7

F

Seeded From UniProt

complete

NOT|involved_in

GO:0106048

spermidine deacetylation

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

NOT|involved_in

GO:0106047

polyamine deacetylation

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

enables

GO:0042903

tubulin deacetylase activity

PMID:27430620[3]

ECO:0000316

genetic interaction evidence used in manual assertion

UniProtKB:Q5EG47,UniProtKB:Q8BRK8

F

Seeded From UniProt

complete

involved_in

GO:0034983

peptidyl-lysine deacetylation

PMID:23962722[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

has_input:(UniProtKB:P10637)

Seeded From UniProt

complete

involved_in

GO:0033138

positive regulation of peptidyl-serine phosphorylation

PMID:23962722[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

has_regulation_target:(UniProtKB:P10637)

Seeded From UniProt

complete

involved_in

GO:0051646

mitochondrion localization

PMID:20457763[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0098779

positive regulation of mitophagy in response to mitochondrial depolarization

PMID:20457763[5]

ECO:0000316

genetic interaction evidence used in manual assertion

UniProtKB:Q9JK66

P

Seeded From UniProt

complete

involved_in

GO:0090042

tubulin deacetylation

PMID:19893491[6]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0043204

perikaryon

PMID:16933150[7]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0042903

tubulin deacetylase activity

PMID:19893491[6]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0030425

dendrite

PMID:16933150[7]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0030424

axon

PMID:16933150[7]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0008017

microtubule binding

PMID:19893491[6]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

PMID:19893491[6]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:19893491[6]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:1901300

positive regulation of hydrogen peroxide-mediated programmed cell death

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0090042

tubulin deacetylation

PMID:17785525[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3776868

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0090042

tubulin deacetylation

PMID:16810319[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3776868

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0090042

tubulin deacetylation

PMID:12606581[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0090042

tubulin deacetylation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0090035

positive regulation of chaperone-mediated protein complex assembly

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0071218

cellular response to misfolded protein

PMID:17785525[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3776868

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0070848

response to growth factor

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0070846

Hsp90 deacetylation

PMID:17785525[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3776868

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0070846

Hsp90 deacetylation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0070845

polyubiquitinated misfolded protein transport

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0070842

aggresome assembly

PMID:16810319[9]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:99919

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0070842

aggresome assembly

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

enables

GO:0070840

dynein complex binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0070301

cellular response to hydrogen peroxide

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0070201

regulation of establishment of protein localization

PMID:22792322[11]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0061734

parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0060997

dendritic spine morphogenesis

PMID:24113571[12]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

occurs_in:(CL:0010012)

Seeded From UniProt

complete

enables

GO:0051879

Hsp90 protein binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0051788

response to misfolded protein

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

enables

GO:0051787

misfolded protein binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0048668

collateral sprouting

PMID:24113571[12]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

occurs_in:(CL:0010012)

Seeded From UniProt

complete

enables

GO:0048487

beta-tubulin binding

PMID:12606581[10]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0048471

perinuclear region of cytoplasm

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

C

Seeded From UniProt

complete

enables

GO:0048156

tau protein binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045861

negative regulation of proteolysis

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045598

regulation of fat cell differentiation

PMID:23126280[13]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0044297

cell body

PMID:24113571[12]

ECO:0000314

direct assay evidence used in manual assertion

C

part_of:(CL:0010012)

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0043242

negative regulation of protein complex disassembly

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0043162

ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway

PMID:17785525[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3776868

P

Seeded From UniProt

complete

enables

GO:0043130

ubiquitin binding

PMID:16810319[9]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0043014

alpha-tubulin binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

F

Seeded From UniProt

complete

part_of

GO:0043005

neuron projection

PMID:24113571[12]

ECO:0000314

direct assay evidence used in manual assertion

C

part_of:(CL:0010012)

Seeded From UniProt

complete

enables

GO:0042903

tubulin deacetylase activity

PMID:12606581[10]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0042903

tubulin deacetylase activity

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

F

Seeded From UniProt

complete

enables

GO:0042826

histone deacetylase binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0040029

regulation of gene expression, epigenetic

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0035967

cellular response to topologically incorrect protein

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0034983

peptidyl-lysine deacetylation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

enables

GO:0033558

protein deacetylase activity

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0033138

positive regulation of peptidyl-serine phosphorylation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

part_of

GO:0032991

protein-containing complex

PMID:17785525[8]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P38532
UniProtKB:Q01853

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0032984

protein-containing complex disassembly

PMID:17785525[8]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:96238
MGI:MGI:99919

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0032461

positive regulation of protein oligomerization

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0032418

lysosome localization

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0031647

regulation of protein stability

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

enables

GO:0031625

ubiquitin protein ligase binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

F

Seeded From UniProt

complete

enables

GO:0031593

polyubiquitin modification-dependent protein binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

F

Seeded From UniProt

complete

part_of

GO:0031252

cell leading edge

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

C

Seeded From UniProt

complete

part_of

GO:0030424

axon

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:619981

C

Seeded From UniProt

complete

colocalizes_with

GO:0030286

dynein complex

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

C

Seeded From UniProt

complete

enables

GO:0019213

deacetylase activity

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:619981

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0016575

histone deacetylation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0016241

regulation of macroautophagy

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

part_of

GO:0016235

aggresome

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

C

Seeded From UniProt

complete

part_of

GO:0016234

inclusion body

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0010870

positive regulation of receptor biosynthetic process

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0010634

positive regulation of epithelial cell migration

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0010469

regulation of signaling receptor activity

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0010033

response to organic substance

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0009967

positive regulation of signal transduction

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0009636

response to toxic substance

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

enables

GO:0008017

microtubule binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

F

Seeded From UniProt

complete

enables

GO:0008013

beta-catenin binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007026

negative regulation of microtubule depolymerization

PMID:12486003[14]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006886

intracellular protein transport

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006515

protein quality control for misfolded or incompletely synthesized proteins

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006511

ubiquitin-dependent protein catabolic process

PMID:16810319[9]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:99919

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006511

ubiquitin-dependent protein catabolic process

PMID:16810319[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:3776868

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006476

protein deacetylation

PMID:12486003[14]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006476

protein deacetylation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

P

Seeded From UniProt

complete

part_of

GO:0005901

caveola

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

C

Seeded From UniProt

complete

colocalizes_with

GO:0005881

cytoplasmic microtubule

PMID:12606581[10]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005875

microtubule associated complex

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

C

Seeded From UniProt

complete

part_of

GO:0005874

microtubule

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

C

Seeded From UniProt

complete

part_of

GO:0005813

centrosome

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:619981

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:11689694[15]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

C

Seeded From UniProt

complete

enables

GO:0004407

histone deacetylase activity

PMID:9891014[16]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0004407

histone deacetylase activity

PMID:11689694[15]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0004407

histone deacetylase activity

GO_REF:0000008

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

F

Seeded From UniProt

complete

enables

GO:0000978

RNA polymerase II proximal promoter sequence-specific DNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0000209

protein polyubiquitination

PMID:11689694[15]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0000118

histone deacetylase complex

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q9UBN7

C

Seeded From UniProt

complete

involved_in

GO:0070932

histone H3 deacetylation

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0032041

P

Seeded From UniProt

complete

involved_in

GO:1901300

positive regulation of hydrogen peroxide-mediated programmed cell death

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0090042

tubulin deacetylation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0090035

positive regulation of chaperone-mediated protein complex assembly

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0070848

response to growth factor

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0070846

Hsp90 deacetylation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0070845

polyubiquitinated misfolded protein transport

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0070842

aggresome assembly

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

enables

GO:0070840

dynein complex binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

F

Seeded From UniProt

complete

involved_in

GO:0070301

cellular response to hydrogen peroxide

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0061734

parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

enables

GO:0051879

Hsp90 protein binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

F

Seeded From UniProt

complete

involved_in

GO:0051788

response to misfolded protein

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

part_of

GO:0048471

perinuclear region of cytoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

C

Seeded From UniProt

complete

enables

GO:0048156

tau protein binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

F

Seeded From UniProt

complete

involved_in

GO:0045861

negative regulation of proteolysis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0043242

negative regulation of protein complex disassembly

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

enables

GO:0043014

alpha-tubulin binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

F

Seeded From UniProt

complete

enables

GO:0042903

tubulin deacetylase activity

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

F

Seeded From UniProt

complete

enables

GO:0042826

histone deacetylase binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

F

Seeded From UniProt

complete

involved_in

GO:0040029

regulation of gene expression, epigenetic

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0035967

cellular response to topologically incorrect protein

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0034983

peptidyl-lysine deacetylation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

enables

GO:0033558

protein deacetylase activity

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

F

Seeded From UniProt

complete

involved_in

GO:0033138

positive regulation of peptidyl-serine phosphorylation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0032461

positive regulation of protein oligomerization

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0032418

lysosome localization

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0031647

regulation of protein stability

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

enables

GO:0031625

ubiquitin protein ligase binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

F

Seeded From UniProt

complete

enables

GO:0031593

polyubiquitin modification-dependent protein binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

F

Seeded From UniProt

complete

part_of

GO:0031252

cell leading edge

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

C

Seeded From UniProt

complete

part_of

GO:0030286

dynein complex

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

C

Seeded From UniProt

complete

involved_in

GO:0016575

histone deacetylation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0016241

regulation of macroautophagy

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

part_of

GO:0016235

aggresome

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

C

Seeded From UniProt

complete

part_of

GO:0016234

inclusion body

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

C

Seeded From UniProt

complete

involved_in

GO:0010870

positive regulation of receptor biosynthetic process

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0010634

positive regulation of epithelial cell migration

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0010469

regulation of signaling receptor activity

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0010033

response to organic substance

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0009967

positive regulation of signal transduction

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0009636

response to toxic substance

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

enables

GO:0008017

microtubule binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

F

Seeded From UniProt

complete

enables

GO:0008013

beta-catenin binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

F

Seeded From UniProt

complete

involved_in

GO:0006886

intracellular protein transport

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0006515

protein quality control for misfolded or incompletely synthesized proteins

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

involved_in

GO:0006476

protein deacetylation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

P

Seeded From UniProt

complete

part_of

GO:0005901

caveola

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

C

Seeded From UniProt

complete

part_of

GO:0005875

microtubule associated complex

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

C

Seeded From UniProt

complete

part_of

GO:0005874

microtubule

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

C

Seeded From UniProt

complete

enables

GO:0004407

histone deacetylase activity

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

F

Seeded From UniProt

complete

enables

GO:0000978

RNA polymerase II proximal promoter sequence-specific DNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

F

Seeded From UniProt

complete

part_of

GO:0000118

histone deacetylase complex

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9UBN7
ensembl:ENSP00000334061

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:A0A024QZ26
ensembl:ENSP00000334061

C

Seeded From UniProt

complete

enables

GO:0008270

zinc ion binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001607

F

Seeded From UniProt

complete

enables

GO:0004407

histone deacetylase activity

GO_REF:0000003

ECO:0000501

evidence used in automatic assertion

EC:3.5.1.98

F

Seeded From UniProt

complete

enables

GO:0032041

NAD-dependent histone deacetylase activity (H3-K14 specific)

GO_REF:0000003

ECO:0000501

evidence used in automatic assertion

EC:3.5.1.98

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:12486003[14]

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0378

F

Seeded From UniProt

complete

involved_in

GO:0006325

chromatin organization

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0156

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

part_of

GO:0042995

cell projection

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0966

C

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

enables

GO:0003779

actin binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0009

F

Seeded From UniProt

complete

part_of

GO:0030425

dendrite

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0283

C

Seeded From UniProt

complete

part_of

GO:0043204

perikaryon

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0197

C

Seeded From UniProt

complete

part_of

GO:0030424

axon

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0279

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 Zhang, M et al. (2014) HDAC6 deacetylates and ubiquitinates MSH2 to maintain proper levels of MutSα. Mol. Cell 55 31-46 PubMed GONUTS page
  2. 2.0 2.1 Perez, M et al. (2009) Tau--an inhibitor of deacetylase HDAC6 function. J. Neurochem. 109 1756-66 PubMed GONUTS page
  3. Mahboubi, H et al. (2016) AMP Kinase Activation Alters Oxidant-Induced Stress Granule Assembly by Modulating Cell Signaling and Microtubule Organization. Mol. Pharmacol. 90 460-8 PubMed GONUTS page
  4. 4.0 4.1 Cook, C et al. (2014) Acetylation of the KXGS motifs in tau is a critical determinant in modulation of tau aggregation and clearance. Hum. Mol. Genet. 23 104-16 PubMed GONUTS page
  5. 5.0 5.1 Lee, JY et al. (2010) Disease-causing mutations in parkin impair mitochondrial ubiquitination, aggregation, and HDAC6-dependent mitophagy. J. Cell Biol. 189 671-9 PubMed GONUTS page
  6. 6.0 6.1 6.2 6.3 6.4 Wickström, SA et al. (2010) CYLD negatively regulates cell-cycle progression by inactivating HDAC6 and increasing the levels of acetylated tubulin. EMBO J. 29 131-44 PubMed GONUTS page
  7. 7.0 7.1 7.2 Southwood, CM et al. (2007) Microtubule deacetylases, SirT2 and HDAC6, in the nervous system. Neurochem. Res. 32 187-95 PubMed GONUTS page
  8. 8.0 8.1 8.2 8.3 8.4 8.5 Boyault, C et al. (2007) HDAC6 controls major cell response pathways to cytotoxic accumulation of protein aggregates. Genes Dev. 21 2172-81 PubMed GONUTS page
  9. 9.0 9.1 9.2 9.3 9.4 Boyault, C et al. (2006) HDAC6-p97/VCP controlled polyubiquitin chain turnover. EMBO J. 25 3357-66 PubMed GONUTS page
  10. 10.0 10.1 10.2 10.3 Zhang, Y et al. (2003) HDAC-6 interacts with and deacetylates tubulin and microtubules in vivo. EMBO J. 22 1168-79 PubMed GONUTS page
  11. Fusco, C et al. (2012) The E3-ubiquitin ligase TRIM50 interacts with HDAC6 and p62, and promotes the sequestration and clearance of ubiquitinated proteins into the aggresome. PLoS ONE 7 e40440 PubMed GONUTS page
  12. 12.0 12.1 12.2 12.3 Ageta-Ishihara, N et al. (2013) Septins promote dendrite and axon development by negatively regulating microtubule stability via HDAC6-mediated deacetylation. Nat Commun 4 2532 PubMed GONUTS page
  13. Yang, W et al. (2013) Regulation of adipogenesis by cytoskeleton remodelling is facilitated by acetyltransferase MEC-17-dependent acetylation of α-tubulin. Biochem. J. 449 605-12 PubMed GONUTS page
  14. 14.0 14.1 14.2 Matsuyama, A et al. (2002) In vivo destabilization of dynamic microtubules by HDAC6-mediated deacetylation. EMBO J. 21 6820-31 PubMed GONUTS page
  15. 15.0 15.1 15.2 Seigneurin-Berny, D et al. (2001) Identification of components of the murine histone deacetylase 6 complex: link between acetylation and ubiquitination signaling pathways. Mol. Cell. Biol. 21 8035-44 PubMed GONUTS page
  16. Verdel, A & Khochbin, S (1999) Identification of a new family of higher eukaryotic histone deacetylases. Coordinate expression of differentiation-dependent chromatin modifiers. J. Biol. Chem. 274 2440-5 PubMed GONUTS page