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MOUSE:FMR1

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Species (Taxon ID) Mus musculus (Mouse). (10090)
Gene Name(s) Fmr1 (synonyms: Fmr-1)
Protein Name(s) Fragile X mental retardation protein 1 homolog

FMRP Protein FMR-1 mFmr1p

External Links
UniProt P35922
EMBL L23971
CCDS CCDS30171.1
CCDS72385.1
PIR S36173
UniGene Mm.3451
ProteinModelPortal P35922
SMR P35922
IntAct P35922
MINT MINT-111096
PhosphoSite P35922
MaxQB P35922
PaxDb P35922
PRIDE P35922
UCSC uc009tiu.1
uc009tiv.1
uc009tiy.1
MGI MGI:95564
eggNOG NOG75351
HOGENOM HOG000293377
HOVERGEN HBG005739
InParanoid P35922
PhylomeDB P35922
ChiTaRS Fmr1
PRO PR:P35922
Proteomes UP000000589
CleanEx MM_FMR1
Genevestigator P35922
GO GO:0044297
GO:0010494
GO:0005845
GO:0071598
GO:0005730
GO:0005634
GO:0008017
GO:0003723
GO:0007417
GO:0051028
GO:0045947
Gene3D 3.30.1370.10
InterPro IPR008395
IPR022034
IPR004087
IPR004088
Pfam PF05641
PF12235
PF00013
SMART SM00322
SUPFAM SSF54791
PROSITE PS51641
PS50084

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0045727

positive regulation of translation

PMID:19166269[1]

ECO:0000315

P

Fig. 6: Sod1 expression reduced in Fmr1-mutant cells

complete
CACAO 6772

GO:0017148

negative regulation of translation

PMID:27666021[2]

ECO:0000315

P

Figure 3 (c-g) shows that in mutant mice cells with no FMRP protein production, there was an increased expression of GABAbR1 and GABAbR2 proteins. This means that in the presence of FMRP, translation of GABAbR1 and GABAbR2 is repressed. This shows FMRP negatively regulates the expression of these proteins.

complete
CACAO 12183

part_of

GO:0005844

polysome

PMID:15805463[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0060998

regulation of dendritic spine development

PMID:16631377[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0051489

regulation of filopodium assembly

PMID:16631377[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0032433

filopodium tip

PMID:16631377[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0030424

axon

PMID:16631377[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0045202

synapse

PMID:16631377[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:1990812

growth cone filopodium

PMID:16631377[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:1902416

positive regulation of mRNA binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

enables

GO:0003730

mRNA 3'-UTR binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

involved_in

GO:0043488

regulation of mRNA stability

PMID:17417632[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007215

glutamate receptor signaling pathway

PMID:17417632[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:1902737

dendritic filopodium

PMID:16631377[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0030425

dendrite

PMID:16631377[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0043197

dendritic spine

PMID:16631377[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:1900453

negative regulation of long-term synaptic depression

PMID:11438589[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007215

glutamate receptor signaling pathway

PMID:11438589[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:1902737

dendritic filopodium

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q80WE1

C

Seeded From UniProt

complete

part_of

GO:0030426

growth cone

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q80WE1

C

Seeded From UniProt

complete

part_of

GO:0030426

growth cone

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0043679

axon terminus

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q80WE1

C

Seeded From UniProt

complete

part_of

GO:0043204

perikaryon

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q80WE1

C

Seeded From UniProt

complete

part_of

GO:0043197

dendritic spine

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q80WE1

C

Seeded From UniProt

complete

enables

GO:0035198

miRNA binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

enables

GO:0035197

siRNA binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

enables

GO:0033592

RNA strand annealing activity

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

involved_in

GO:2000637

positive regulation of gene silencing by miRNA

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

part_of

GO:0014069

postsynaptic density

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q80WE1

C

Seeded From UniProt

complete

part_of

GO:0005844

polysome

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q80WE1

C

Seeded From UniProt

complete

involved_in

GO:0010629

negative regulation of gene expression

PMID:23235829[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0043204

perikaryon

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q16637

C

Seeded From UniProt

complete

part_of

GO:0098794

postsynapse

PMID:17254795[8]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0098908

regulation of neuronal action potential

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

colocalizes_with

GO:0032797

SMN complex

PMID:18093976[9]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

involved_in

GO:0002092

positive regulation of receptor internalization

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

enables

GO:0002151

G-quadruplex RNA binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

involved_in

GO:0000381

regulation of alternative mRNA splicing, via spliceosome

PMID:18653529[10]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:1905244

regulation of modification of synaptic structure

PMID:16055059[11]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

occurs_in:(CL:0000121)

Seeded From UniProt

complete

part_of

GO:0048471

perinuclear region of cytoplasm

PMID:16790844[12]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:16790844[12]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0046982

protein heterodimerization activity

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

enables

GO:0042803

protein homodimerization activity

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

involved_in

GO:0007215

glutamate receptor signaling pathway

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q80WE1

P

Seeded From UniProt

complete

enables

GO:0035064

methylated histone binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

part_of

GO:0005694

chromosome

PMID:24813610[13]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0010369

chromocenter

PMID:24813610[13]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0003682

chromatin binding

PMID:24813610[13]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0033129

positive regulation of histone phosphorylation

PMID:24813610[13]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:2001022

positive regulation of response to DNA damage stimulus

PMID:24813610[13]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0034644

cellular response to UV

PMID:24813610[13]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0072711

cellular response to hydroxyurea

PMID:24813610[13]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006974

cellular response to DNA damage stimulus

PMID:24813610[13]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0008089

anterograde axonal transport

PMID:26586091[14]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0034046

poly(G) binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

enables

GO:0008266

poly(U) RNA binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

part_of

GO:0048471

perinuclear region of cytoplasm

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0005730

nucleolus

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

enables

GO:0003729

mRNA binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

involved_in

GO:0099578

regulation of translation at postsynapse, modulating synaptic transmission

PMID:18614030[15]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

  • occurs_in:(CL:0002608)
  • regulates_translation_of:(ENSEMBL:ENSMUSG00000022602)

Seeded From UniProt

complete

part_of

GO:0097386

glial cell projection

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q80WE1

C

Seeded From UniProt

complete

enables

GO:0003730

mRNA 3'-UTR binding

PMID:14613971[16]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003729

mRNA binding

PMID:14613971[16]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0017148

negative regulation of translation

PMID:14613971[16]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005844

polysome

PMID:14613971[16]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0043204

perikaryon

PMID:14613971[16]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:1902737

dendritic filopodium

PMID:18539120[17]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0043197

dendritic spine

PMID:18539120[17]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0030425

dendrite

PMID:18539120[17]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0051028

mRNA transport

PMID:18539120[17]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0036464

cytoplasmic ribonucleoprotein granule

PMID:18539120[17]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0071598

neuronal ribonucleoprotein granule

PMID:18539120[17]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0007215

glutamate receptor signaling pathway

PMID:18539120[17]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0008017

microtubule binding

PMID:18539120[17]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0070840

dynein complex binding

PMID:18539120[17]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0051491

positive regulation of filopodium assembly

PMID:18539120[17]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0060999

positive regulation of dendritic spine development

PMID:18539120[17]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0048027

mRNA 5'-UTR binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

enables

GO:0035613

RNA stem-loop binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

involved_in

GO:0045727

positive regulation of translation

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

enables

GO:0003730

mRNA 3'-UTR binding

PMID:11376146[18]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:2000766

negative regulation of cytoplasmic translation

PMID:11376146[18]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0030371

translation repressor activity

PMID:11376146[18]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0098793

presynapse

PMID:19193898[19]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0098794

postsynapse

PMID:19193898[19]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0030424

axon

PMID:19193898[19]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0030425

dendrite

PMID:19193898[19]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0043204

perikaryon

PMID:19193898[19]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:2000301

negative regulation of synaptic vesicle exocytosis

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q80WE1

P

Seeded From UniProt

complete

involved_in

GO:1901386

negative regulation of voltage-gated calcium channel activity

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q80WE1

P

Seeded From UniProt

complete

involved_in

GO:0046928

regulation of neurotransmitter secretion

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q80WE1

P

Seeded From UniProt

complete

involved_in

GO:1901800

positive regulation of proteasomal protein catabolic process

PMID:24709664[20]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:24709664[20]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0019897

extrinsic component of plasma membrane

PMID:24709664[20]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:2000637

positive regulation of gene silencing by miRNA

PMID:20159450[21]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0035198

miRNA binding

PMID:20159450[21]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:1990825

sequence-specific mRNA binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

involved_in

GO:0045727

positive regulation of translation

PMID:19166269[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045947

negative regulation of translational initiation

PMID:18805096[22]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005845

mRNA cap binding complex

PMID:18805096[22]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0099578

regulation of translation at postsynapse, modulating synaptic transmission

PMID:12032354[23]

ECO:0001225

knockout evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0099523

presynaptic cytosol

PMID:19193898[19]

ECO:0006003

electron microscopy evidence used in manual assertion

C

  • part_of:(GO:0098978)
  • part_of:(UBERON:0000061)
  • part_of:(UBERON:0002421)

Seeded From UniProt

complete

part_of

GO:0099523

presynaptic cytosol

PMID:19193898[19]

ECO:0006003

electron microscopy evidence used in manual assertion

C

  • part_of:(GO:0098978)
  • part_of:(UBERON:0000061)
  • part_of:(UBERON:0002264)

Seeded From UniProt

complete

part_of

GO:0099523

presynaptic cytosol

PMID:19193898[19]

ECO:0006003

electron microscopy evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0098978

glutamatergic synapse

PMID:19193898[19]

ECO:0006003

electron microscopy evidence used in manual assertion

C

part_of:(UBERON:0002421)

Seeded From UniProt

complete

part_of

GO:0098978

glutamatergic synapse

PMID:19193898[19]

ECO:0006003

electron microscopy evidence used in manual assertion

C

part_of:(UBERON:0002264)

Seeded From UniProt

complete

part_of

GO:0098686

hippocampal mossy fiber to CA3 synapse

PMID:19193898[19]

ECO:0006003

electron microscopy evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0098685

Schaffer collateral - CA1 synapse

PMID:12032354[23]

ECO:0001225

knockout evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0045182

translation regulator activity

PMID:12032354[23]

ECO:0001225

knockout evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:2001022

positive regulation of response to DNA damage stimulus

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:95564
PANTHER:PTN001318101
UniProtKB:Q06787

P

Seeded From UniProt

complete

involved_in

GO:1905244

regulation of modification of synaptic structure

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:95564
PANTHER:PTN000063980

P

Seeded From UniProt

complete

part_of

GO:1902737

dendritic filopodium

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:95564
PANTHER:PTN001318101
RGD:2623

C

Seeded From UniProt

complete

involved_in

GO:0099578

regulation of translation at postsynapse, modulating synaptic transmission

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:95564
PANTHER:PTN000063980

P

Seeded From UniProt

complete

part_of

GO:0098793

presynapse

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:95564
PANTHER:PTN001318101

C

Seeded From UniProt

complete

part_of

GO:0071598

neuronal ribonucleoprotein granule

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0028734
MGI:MGI:95564
PANTHER:PTN000063980
RGD:2623

C

Seeded From UniProt

complete

involved_in

GO:0060998

regulation of dendritic spine development

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:95564
PANTHER:PTN000063980
UniProtKB:Q06787

P

Seeded From UniProt

complete

involved_in

GO:0051489

regulation of filopodium assembly

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:95564
PANTHER:PTN001318101
UniProtKB:Q06787

P

Seeded From UniProt

complete

involved_in

GO:0048814

regulation of dendrite morphogenesis

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0028734
PANTHER:PTN000063980

P

Seeded From UniProt

complete

involved_in

GO:0045727

positive regulation of translation

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:95564
PANTHER:PTN001318100
UniProtKB:Q06787

P

Seeded From UniProt

complete

enables

GO:0045182

translation regulator activity

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0028734
PANTHER:PTN001318100

F

Seeded From UniProt

complete

part_of

GO:0044326

dendritic spine neck

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001318101
RGD:2623

C

Seeded From UniProt

complete

involved_in

GO:0043488

regulation of mRNA stability

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:95564
PANTHER:PTN001318100

P

Seeded From UniProt

complete

part_of

GO:0043197

dendritic spine

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:104860
MGI:MGI:95564
PANTHER:PTN000063980
RGD:2623

C

Seeded From UniProt

complete

part_of

GO:0043025

neuronal cell body

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0028734
PANTHER:PTN000063980
RGD:2623

C

Seeded From UniProt

complete

enables

GO:0042803

protein homodimerization activity

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001318100
UniProtKB:P51114
UniProtKB:P51116
UniProtKB:Q06787

F

Seeded From UniProt

complete

part_of

GO:0036464

cytoplasmic ribonucleoprotein granule

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:95564
PANTHER:PTN001318100
RGD:2623
UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0035770

ribonucleoprotein granule

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:104860
MGI:MGI:95564
PANTHER:PTN001318100

C

Seeded From UniProt

complete

part_of

GO:0030426

growth cone

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001318101
RGD:2623
UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0030424

axon

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:104860
MGI:MGI:95564
PANTHER:PTN000063980
RGD:2623

C

Seeded From UniProt

complete

involved_in

GO:0017148

negative regulation of translation

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0028734
MGI:MGI:104860
MGI:MGI:95564
PANTHER:PTN001318100

P

Seeded From UniProt

complete

part_of

GO:0014069

postsynaptic density

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000063980
RGD:2623

C

Seeded From UniProt

complete

involved_in

GO:0008089

anterograde axonal transport

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:95564
PANTHER:PTN000063980

P

Seeded From UniProt

complete

involved_in

GO:0007417

central nervous system development

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:95564
PANTHER:PTN000063980

P

Seeded From UniProt

complete

part_of

GO:0005844

polysome

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:104860
MGI:MGI:1346074
MGI:MGI:95564
PANTHER:PTN001318100
RGD:2623
UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0028734
MGI:MGI:104860
MGI:MGI:95564
PANTHER:PTN001318100
UniProtKB:P51116
UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:104860
MGI:MGI:95564
PANTHER:PTN001318100
RGD:2623
UniProtKB:Q06787
Xenbase:XB-GENE-1004708
Xenbase:XB-GENE-977113

C

Seeded From UniProt

complete

enables

GO:0003730

mRNA 3'-UTR binding

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:104860
MGI:MGI:95564
PANTHER:PTN001318100
UniProtKB:Q06787

F

Seeded From UniProt

complete

enables

GO:0003729

mRNA binding

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:95564
PANTHER:PTN001318100
RGD:2623
UniProtKB:Q06787

F

Seeded From UniProt

complete

involved_in

GO:0001934

positive regulation of protein phosphorylation

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN001318101
RGD:2623

P

Seeded From UniProt

complete

involved_in

GO:0000381

regulation of alternative mRNA splicing, via spliceosome

PMID:21873635[24]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:95564
PANTHER:PTN001318101
UniProtKB:Q06787

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:2001022

positive regulation of response to DNA damage stimulus

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:2000637

positive regulation of gene silencing by miRNA

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:2000301

negative regulation of synaptic vesicle exocytosis

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

P

Seeded From UniProt

complete

part_of

GO:1990904

ribonucleoprotein complex

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

enables

GO:1990825

sequence-specific mRNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

part_of

GO:1990635

proximal dendrite

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

part_of

GO:1990124

messenger ribonucleoprotein complex

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:1902737

dendritic filopodium

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:1902416

positive regulation of mRNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:1902373

negative regulation of mRNA catabolic process

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:1901386

negative regulation of voltage-gated calcium channel activity

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:1901254

positive regulation of intracellular transport of viral material

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0099577

regulation of translation at presynapse, modulating synaptic transmission

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

P

Seeded From UniProt

complete

part_of

GO:0099524

postsynaptic cytosol

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

part_of

GO:0098978

glutamatergic synapse

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0098908

regulation of neuronal action potential

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

part_of

GO:0098685

Schaffer collateral - CA1 synapse

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0098586

cellular response to virus

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

part_of

GO:0097444

spine apparatus

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

part_of

GO:0097386

glial cell projection

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

part_of

GO:0071598

neuronal ribonucleoprotein granule

PMID:21933836[25]

ECO:0000314

direct assay evidence used in manual assertion

C

  • part_of:(EMAPA:17544)
  • part_of:(CL:0000117)

Seeded From UniProt

complete

part_of

GO:0071598

neuronal ribonucleoprotein granule

PMID:17881655[26]

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q80WE1

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0060998

regulation of dendritic spine development

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0060996

dendritic spine development

PMID:23509247[27]

ECO:0000316

genetic interaction evidence used in manual assertion

MGI:MGI:1339656
MGI:MGI:1339975
MGI:MGI:1339984
MGI:MGI:1917834

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0060964

regulation of gene silencing by miRNA

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0051489

regulation of filopodium assembly

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

part_of

GO:0048471

perinuclear region of cytoplasm

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0048471

perinuclear region of cytoplasm

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

enables

GO:0048027

mRNA 5'-UTR binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

enables

GO:0046982

protein heterodimerization activity

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0046928

regulation of neurotransmitter secretion

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045727

positive regulation of translation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0045665

negative regulation of neuron differentiation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

P

Seeded From UniProt

complete

enables

GO:0045182

translation regulator activity

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0044830

modulation by host of viral RNA genome replication

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

part_of

GO:0044327

dendritic spine head

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

part_of

GO:0044326

dendritic spine neck

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

enables

GO:0044325

ion channel binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

part_of

GO:0044297

cell body

PMID:17881655[26]

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q80WE1

C

Seeded From UniProt

complete

part_of

GO:0043679

axon terminus

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0043524

negative regulation of neuron apoptotic process

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

P

Seeded From UniProt

complete

part_of

GO:0043204

perikaryon

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0043204

perikaryon

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

part_of

GO:0043197

dendritic spine

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

part_of

GO:0043195

terminal bouton

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

part_of

GO:0043025

neuronal cell body

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

enables

GO:0043022

ribosome binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

part_of

GO:0043005

neuron projection

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0043005

neuron projection

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

part_of

GO:0042995

cell projection

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

enables

GO:0042803

protein homodimerization activity

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

part_of

GO:0036464

cytoplasmic ribonucleoprotein granule

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0036464

cytoplasmic ribonucleoprotein granule

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

part_of

GO:0035770

ribonucleoprotein granule

PMID:26627310[28]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0035613

RNA stem-loop binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

enables

GO:0035198

miRNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

enables

GO:0035197

siRNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

enables

GO:0035064

methylated histone binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

enables

GO:0034046

poly(G) binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

enables

GO:0033592

RNA strand annealing activity

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0033129

positive regulation of histone phosphorylation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

colocalizes_with

GO:0032797

SMN complex

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

enables

GO:0031369

translation initiation factor binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

part_of

GO:0030426

growth cone

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0030426

growth cone

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

part_of

GO:0030425

dendrite

PMID:22022532[29]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0030425

dendrite

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

part_of

GO:0030424

axon

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

enables

GO:0030371

translation repressor activity

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

enables

GO:0019904

protein domain specific binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

F

Seeded From UniProt

complete

enables

GO:0019903

protein phosphatase binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

F

Seeded From UniProt

complete

enables

GO:0019901

protein kinase binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

F

Seeded From UniProt

complete

part_of

GO:0019034

viral replication complex

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0015030

Cajal body

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0014069

postsynaptic density

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0010955

negative regulation of protein processing

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0010629

negative regulation of gene expression

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0010628

positive regulation of gene expression

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

P

Seeded From UniProt

complete

part_of

GO:0010494

cytoplasmic stress granule

PMID:21933836[25]

ECO:0000314

direct assay evidence used in manual assertion

C

  • part_of:(EMAPA:17544)
  • part_of:(CL:0000117)

Seeded From UniProt

complete

part_of

GO:0010494

cytoplasmic stress granule

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

enables

GO:0008266

poly(U) RNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

enables

GO:0008017

microtubule binding

PMID:17881655[26]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007417

central nervous system development

PMID:12700164[30]

ECO:0000315

mutant phenotype evidence used in manual assertion

MGI:MGI:2451086

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0007215

glutamate receptor signaling pathway

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0006974

cellular response to DNA damage stimulus

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

colocalizes_with

GO:0005874

microtubule

PMID:17881655[26]

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q80WE1

C

Seeded From UniProt

complete

part_of

GO:0005844

polysome

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0005844

polysome

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

part_of

GO:0005791

rough endoplasmic reticulum

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

part_of

GO:0005790

smooth endoplasmic reticulum

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0005730

nucleolus

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:12700164[30]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

C

Seeded From UniProt

complete

enables

GO:0003730

mRNA 3'-UTR binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

enables

GO:0003729

mRNA binding

PMID:26627310[28]

ECO:0000314

direct assay evidence used in manual assertion

F

  • has_input:(MGI:MGI:101864)
  • has_input:(MGI:MGI:1277959)
  • has_input:(MGI:MGI:2138865)
  • has_input:(MGI:MGI:88059)
  • has_input:(MGI:MGI:88256)

Seeded From UniProt

complete

enables

GO:0003729

mRNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

enables

GO:0003729

mRNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

F

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

PMID:24349419[31]

ECO:0000314

direct assay evidence used in manual assertion

F

has_input:(MGI:MGI:2677850)

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

F

Seeded From UniProt

complete

enables

GO:0002151

G-quadruplex RNA binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

F

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0002092

positive regulation of receptor internalization

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0002091

negative regulation of receptor internalization

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0001934

positive regulation of protein phosphorylation

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

P

Seeded From UniProt

complete

acts_upstream_of_or_within

GO:0000381

regulation of alternative mRNA splicing, via spliceosome

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

UniProtKB:Q06787

P

Seeded From UniProt

complete

enables

GO:0000340

RNA 7-methylguanosine cap binding

GO_REF:0000096

ECO:0000266

sequence orthology evidence used in manual assertion

RGD:2623

F

Seeded From UniProt

complete

part_of

GO:1904115

axon cytoplasm

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0008089

C

Seeded From UniProt

complete

part_of

GO:1904115

axon cytoplasm

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0008089

C

Seeded From UniProt

complete

enables

GO:0003676

nucleic acid binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR004087

F

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR004088
InterPro:IPR022034
InterPro:IPR036612

F

Seeded From UniProt

complete

enables

GO:0003729

mRNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR040148

F

Seeded From UniProt

complete

involved_in

GO:0006417

regulation of translation

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR040148

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

part_of

GO:0042995

cell projection

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0966
UniProtKB-SubCell:SL-0280

C

Seeded From UniProt

complete

involved_in

GO:0007399

nervous system development

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0524

P

Seeded From UniProt

complete

part_of

GO:0043005

neuron projection

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0771
UniProtKB-SubCell:SL-0261

C

Seeded From UniProt

complete

part_of

GO:0000775

chromosome, centromeric region

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0137
UniProtKB-SubCell:SL-0047

C

Seeded From UniProt

complete

involved_in

GO:0006417

regulation of translation

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0810

P

Seeded From UniProt

complete

involved_in

GO:0031047

gene silencing by RNA

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0943

P

Seeded From UniProt

complete

part_of

GO:0045211

postsynaptic membrane

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0628
UniProtKB-SubCell:SL-0219

C

Seeded From UniProt

complete

involved_in

GO:0006397

mRNA processing

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0507

P

Seeded From UniProt

complete

part_of

GO:0030054

cell junction

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0965

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0694

F

Seeded From UniProt

complete

involved_in

GO:0008380

RNA splicing

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0508

P

Seeded From UniProt

complete

involved_in

GO:0051028

mRNA transport

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0509

P

Seeded From UniProt

complete

part_of

GO:0005694

chromosome

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0158
UniProtKB-SubCell:SL-0468

C

Seeded From UniProt

complete

involved_in

GO:0006974

cellular response to DNA damage stimulus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0227

P

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-1003
UniProtKB-SubCell:SL-0039

C

Seeded From UniProt

complete

part_of

GO:0045202

synapse

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0770
UniProtKB-SubCell:SL-0258

C

Seeded From UniProt

complete

part_of

GO:0016020

membrane

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0472

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0190

C

Seeded From UniProt

complete

part_of

GO:0030175

filopodium

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0286

C

Seeded From UniProt

complete

part_of

GO:0036464

cytoplasmic ribonucleoprotein granule

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0495

C

Seeded From UniProt

complete

part_of

GO:0010494

cytoplasmic stress granule

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0496

C

Seeded From UniProt

complete

part_of

GO:0030426

growth cone

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0288

C

Seeded From UniProt

complete

part_of

GO:0048471

perinuclear region of cytoplasm

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0198

C

Seeded From UniProt

complete

part_of

GO:0030425

dendrite

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0283

C

Seeded From UniProt

complete

part_of

GO:0043204

perikaryon

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0197

C

Seeded From UniProt

complete

part_of

GO:0005730

nucleolus

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0188

C

Seeded From UniProt

complete

part_of

GO:0032433

filopodium tip

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0470

C

Seeded From UniProt

complete

part_of

GO:0042734

presynaptic membrane

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0222

C

Seeded From UniProt

complete

part_of

GO:0043197

dendritic spine

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0284

C

Seeded From UniProt

complete

part_of

GO:0030424

axon

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0279

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Bechara, EG et al. (2009) A novel function for fragile X mental retardation protein in translational activation. PLoS Biol. 7 e16 PubMed GONUTS page
  2. Wolfe, SA et al. (2016) FMRP regulates an ethanol-dependent shift in GABABR function and expression with rapid antidepressant properties. Nat Commun 7 12867 PubMed GONUTS page
  3. Darnell, JC et al. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19 903-18 PubMed GONUTS page
  4. 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 Antar, LN et al. () Local functions for FMRP in axon growth cone motility and activity-dependent regulation of filopodia and spine synapses. Mol. Cell. Neurosci. 32 37-48 PubMed GONUTS page
  5. 5.0 5.1 Zalfa, F et al. (2007) A new function for the fragile X mental retardation protein in regulation of PSD-95 mRNA stability. Nat. Neurosci. 10 578-87 PubMed GONUTS page
  6. 6.0 6.1 Nimchinsky, EA et al. (2001) Abnormal development of dendritic spines in FMR1 knock-out mice. J. Neurosci. 21 5139-46 PubMed GONUTS page
  7. Ascano, M Jr et al. (2012) FMRP targets distinct mRNA sequence elements to regulate protein expression. Nature 492 382-6 PubMed GONUTS page
  8. Ferrari, F et al. (2007) The fragile X mental retardation protein-RNP granules show an mGluR-dependent localization in the post-synaptic spines. Mol. Cell. Neurosci. 34 343-54 PubMed GONUTS page
  9. Piazzon, N et al. (2008) In vitro and in cellulo evidences for association of the survival of motor neuron complex with the fragile X mental retardation protein. J. Biol. Chem. 283 5598-610 PubMed GONUTS page
  10. Didiot, MC et al. (2008) The G-quartet containing FMRP binding site in FMR1 mRNA is a potent exonic splicing enhancer. Nucleic Acids Res. 36 4902-12 PubMed GONUTS page
  11. Koekkoek, SK et al. (2005) Deletion of FMR1 in Purkinje cells enhances parallel fiber LTD, enlarges spines, and attenuates cerebellar eyelid conditioning in Fragile X syndrome. Neuron 47 339-52 PubMed GONUTS page
  12. 12.0 12.1 Lai, D et al. (2006) The fragile X mental retardation protein interacts with a distinct mRNA nuclear export factor NXF2. RNA 12 1446-9 PubMed GONUTS page
  13. 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.7 Alpatov, R et al. (2014) A chromatin-dependent role of the fragile X mental retardation protein FMRP in the DNA damage response. Cell 157 869-81 PubMed GONUTS page
  14. Zhang, P et al. (2015) Novel RNA- and FMRP-binding protein TRF2-S regulates axonal mRNA transport and presynaptic plasticity. Nat Commun 6 8888 PubMed GONUTS page
  15. Park, S et al. (2008) Elongation factor 2 and fragile X mental retardation protein control the dynamic translation of Arc/Arg3.1 essential for mGluR-LTD. Neuron 59 70-83 PubMed GONUTS page
  16. 16.0 16.1 16.2 16.3 16.4 Wang, H et al. (2004) Developmentally-programmed FMRP expression in oligodendrocytes: a potential role of FMRP in regulating translation in oligodendroglia progenitors. Hum. Mol. Genet. 13 79-89 PubMed GONUTS page
  17. 17.00 17.01 17.02 17.03 17.04 17.05 17.06 17.07 17.08 17.09 17.10 Dictenberg, JB et al. (2008) A direct role for FMRP in activity-dependent dendritic mRNA transport links filopodial-spine morphogenesis to fragile X syndrome. Dev. Cell 14 926-39 PubMed GONUTS page
  18. 18.0 18.1 18.2 Li, Z et al. (2001) The fragile X mental retardation protein inhibits translation via interacting with mRNA. Nucleic Acids Res. 29 2276-83 PubMed GONUTS page
  19. 19.00 19.01 19.02 19.03 19.04 19.05 19.06 19.07 19.08 19.09 19.10 Christie, SB et al. (2009) The FXG: a presynaptic fragile X granule expressed in a subset of developing brain circuits. J. Neurosci. 29 1514-24 PubMed GONUTS page
  20. 20.0 20.1 20.2 Ferron, L et al. (2014) Fragile X mental retardation protein controls synaptic vesicle exocytosis by modulating N-type calcium channel density. Nat Commun 5 3628 PubMed GONUTS page
  21. 21.0 21.1 Edbauer, D et al. (2010) Regulation of synaptic structure and function by FMRP-associated microRNAs miR-125b and miR-132. Neuron 65 373-84 PubMed GONUTS page
  22. 22.0 22.1 Napoli, I et al. (2008) The fragile X syndrome protein represses activity-dependent translation through CYFIP1, a new 4E-BP. Cell 134 1042-54 PubMed GONUTS page
  23. 23.0 23.1 23.2 Huber, KM et al. (2002) Altered synaptic plasticity in a mouse model of fragile X mental retardation. Proc. Natl. Acad. Sci. U.S.A. 99 7746-50 PubMed GONUTS page
  24. 24.00 24.01 24.02 24.03 24.04 24.05 24.06 24.07 24.08 24.09 24.10 24.11 24.12 24.13 24.14 24.15 24.16 24.17 24.18 24.19 24.20 24.21 24.22 24.23 24.24 24.25 24.26 24.27 24.28 24.29 24.30 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  25. 25.0 25.1 Kunde, SA et al. (2011) The X-chromosome-linked intellectual disability protein PQBP1 is a component of neuronal RNA granules and regulates the appearance of stress granules. Hum. Mol. Genet. 20 4916-31 PubMed GONUTS page
  26. 26.0 26.1 26.2 26.3 Davidovic, L et al. (2007) The fragile X mental retardation protein is a molecular adaptor between the neurospecific KIF3C kinesin and dendritic RNA granules. Hum. Mol. Genet. 16 3047-58 PubMed GONUTS page
  27. Dolan, BM et al. (2013) Rescue of fragile X syndrome phenotypes in Fmr1 KO mice by the small-molecule PAK inhibitor FRAX486. Proc. Natl. Acad. Sci. U.S.A. 110 5671-6 PubMed GONUTS page
  28. 28.0 28.1 Berg, JM et al. (2015) JAKMIP1, a Novel Regulator of Neuronal Translation, Modulates Synaptic Function and Autistic-like Behaviors in Mouse. Neuron 88 1173-1191 PubMed GONUTS page
  29. Cook, D et al. (2011) Fragile X related protein 1 clusters with ribosomes and messenger RNAs at a subset of dendritic spines in the mouse hippocampus. PLoS ONE 6 e26120 PubMed GONUTS page
  30. 30.0 30.1 Willemsen, R et al. (2003) The FMR1 CGG repeat mouse displays ubiquitin-positive intranuclear neuronal inclusions; implications for the cerebellar tremor/ataxia syndrome. Hum. Mol. Genet. 12 949-59 PubMed GONUTS page
  31. Derlig, K et al. (2013) Identification and characterisation of Simiate, a novel protein linked to the fragile X syndrome. PLoS ONE 8 e83007 PubMed GONUTS page