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HUMAN:XPF

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Species (Taxon ID) Homo sapiens (Human). (9606)
Gene Name(s) ERCC4 (synonyms: ERCC11, XPF)
Protein Name(s) DNA repair endonuclease XPF

DNA excision repair protein ERCC-4 DNA repair protein complementing XP-F cells Xeroderma pigmentosum group F-complementing protein

External Links
UniProt Q92889
EMBL L77890
AF491814
AK289726
AC010401
BC142631
U64315
CCDS CCDS32390.1
RefSeq NP_005227.1
UniGene Hs.567265
PDB 1Z00
2A1J
2AQ0
2KN7
PDBsum 1Z00
2A1J
2AQ0
2KN7
ProteinModelPortal Q92889
SMR Q92889
BioGrid 108384
DIP DIP-42006N
IntAct Q92889
MINT MINT-192303
STRING 9606.ENSP00000310520
PhosphoSite Q92889
DMDM 229463004
MaxQB Q92889
PaxDb Q92889
PRIDE Q92889
DNASU 2072
Ensembl ENST00000311895
ENST00000575156
GeneID 2072
KEGG hsa:2072
UCSC uc002dce.2
uc010bva.3
CTD 2072
GeneCards GC16P014014
GeneReviews ERCC4
H-InvDB HIX0038603
HIX0173284
HGNC HGNC:3436
HPA CAB000156
HPA045828
MIM 133520
278760
610965
615272
neXtProt NX_Q92889
Orphanet 90321
84
276264
PharmGKB PA27850
eggNOG COG1948
GeneTree ENSGT00390000004394
HOGENOM HOG000202204
HOVERGEN HBG051500
InParanoid Q92889
KO K10848
OMA QQSIVVD
OrthoDB EOG7VTDM8
PhylomeDB Q92889
TreeFam TF101234
Reactome REACT_1941
REACT_2222
REACT_257
REACT_311
EvolutionaryTrace Q92889
GeneWiki ERCC4
GenomeRNAi 2072
NextBio 35462247
PRO PR:Q92889
Proteomes UP000005640
Bgee Q92889
CleanEx HS_ERCC4
ExpressionAtlas Q92889
Genevestigator Q92889
GO GO:0000781
GO:0000784
GO:0005654
GO:0000109
GO:0000110
GO:0005634
GO:0005669
GO:0003684
GO:0004520
GO:0008022
GO:0047485
GO:0003697
GO:0000014
GO:0000737
GO:0006281
GO:0000724
GO:0032205
GO:0006289
GO:1901255
GO:0000718
GO:0033683
GO:0006295
GO:0006296
GO:0000712
GO:0009411
GO:0000723
GO:0010834
GO:0006283
GO:0009650
Gene3D 3.40.50.10130
InterPro IPR020819
IPR006166
IPR006167
IPR011335
IPR010994
Pfam PF02732
SMART SM00891
SUPFAM SSF47781
SSF52980
TIGRFAMs TIGR00596

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:1905768

negative regulation of double-stranded telomeric DNA binding

PMID:18812185[1]

ECO:0000314

direct assay evidence used in manual assertion

P

regulates_activity_of:(UniProtKB:Q15554)

Seeded From UniProt

complete

NOT|involved_in

GO:0051974

negative regulation of telomerase activity

PMID:18812185[1]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

NOT|enables

GO:0010521

telomerase inhibitor activity

PMID:18812185[1]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:1904357

negative regulation of telomere maintenance via telomere lengthening

PMID:18812185[1]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0070522

ERCC4-ERCC1 complex

PMID:17055345[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0004520

endodeoxyribonuclease activity

PMID:17055345[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0034644

cellular response to UV

PMID:17055345[2]

ECO:0000316

genetic interaction evidence used in manual assertion

UniProtKB:Q15554

P

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

PMID:17055345[2]

ECO:0000316

genetic interaction evidence used in manual assertion

UniProtKB:Q15554

P

Seeded From UniProt

complete

involved_in

GO:0000723

telomere maintenance

PMID:17055345[2]

ECO:0000316

genetic interaction evidence used in manual assertion

UniProtKB:Q15554

P

Seeded From UniProt

complete

involved_in

GO:0061819

telomeric DNA-containing double minutes formation

PMID:14690602[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:1905765

negative regulation of protection from non-homologous end joining at telomere

PMID:14690602[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006303

double-strand break repair via nonhomologous end joining

PMID:14690602[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

occurs_at:(GO:0000784)

Seeded From UniProt

complete

part_of

GO:0070522

ERCC4-ERCC1 complex

PMID:14690602[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

contributes_to

GO:1990599

3' overhang single-stranded DNA endodeoxyribonuclease activity

PMID:14690602[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0000781

chromosome, telomeric region

PMID:14690602[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0000723

telomere maintenance

PMID:14690602[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0047485

protein N-terminus binding

PMID:14734547[4]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P43351

F

Seeded From UniProt

complete

contributes_to

GO:0003677

DNA binding

PMID:14734547[4]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0033683

nucleotide-excision repair, DNA incision

PMID:10413517[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0032205

negative regulation of telomere maintenance

PMID:17055345[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0009411

response to UV

PMID:16678501[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0008022

protein C-terminus binding

PMID:9722633[7]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P07992

F

Seeded From UniProt

complete

involved_in

GO:0006296

nucleotide-excision repair, DNA incision, 5'-to lesion

PMID:14728600[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006296

nucleotide-excision repair, DNA incision, 5'-to lesion

PMID:11790111[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006295

nucleotide-excision repair, DNA incision, 3'-to lesion

PMID:11790111[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006289

nucleotide-excision repair

PMID:8797827[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

PMID:19596235[11]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:12571280[12]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0004520

endodeoxyribonuclease activity

PMID:10413517[5]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0004520

endodeoxyribonuclease activity

PMID:14734547[4]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

contributes_to

GO:0004520

endodeoxyribonuclease activity

PMID:8797827[10]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003697

single-stranded DNA binding

PMID:10413517[5]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003684

damaged DNA binding

PMID:11790111[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0000784

nuclear chromosome, telomeric region

PMID:14690602[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0000724

double-strand break repair via homologous recombination

PMID:14728600[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0000110

nucleotide-excision repair factor 1 complex

PMID:10413517[5]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:1901255

nucleotide-excision repair involved in interstrand cross-link repair

PMID:21873635[13]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000015911
PomBase:SPCC970.01

P

Seeded From UniProt

complete

involved_in

GO:0006296

nucleotide-excision repair, DNA incision, 5'-to lesion

PMID:21873635[13]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000015911
SGD:S000005943
UniProtKB:Q92889

P

Seeded From UniProt

complete

enables

GO:0003697

single-stranded DNA binding

PMID:21873635[13]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000015911
SGD:S000005943
UniProtKB:Q92889

F

Seeded From UniProt

complete

enables

GO:0003684

damaged DNA binding

PMID:21873635[13]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000015911
UniProtKB:Q92889

F

Seeded From UniProt

complete

involved_in

GO:0000724

double-strand break repair via homologous recombination

PMID:21873635[13]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000015911
PomBase:SPCC970.01
UniProtKB:Q92889
UniProtKB:Q9LKI5
dictyBase:DDB_G0284419

P

Seeded From UniProt

complete

involved_in

GO:0000712

resolution of meiotic recombination intermediates

PMID:21873635[13]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0002707
PANTHER:PTN000015911
WB:WBGene00008140

P

Seeded From UniProt

complete

part_of

GO:0000110

nucleotide-excision repair factor 1 complex

PMID:21873635[13]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000015911
PomBase:SPCC970.01
SGD:S000005943
UniProtKB:Q92889

C

Seeded From UniProt

complete

enables

GO:0000014

single-stranded DNA endodeoxyribonuclease activity

PMID:21873635[13]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000015911
SGD:S000005943
UniProtKB:Q9LKI5

F

Seeded From UniProt

complete

involved_in

GO:0006289

nucleotide-excision repair

PMID:10644440[14]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0000109

nucleotide-excision repair complex

PMID:10644440[14]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:22483113[15]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q92889

F

Seeded From UniProt

complete

involved_in

GO:0051974

negative regulation of telomerase activity

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0010521

P

Seeded From UniProt

complete

involved_in

GO:0010506

regulation of autophagy

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9QZD4
ensembl:ENSMUSP00000023206

P

Seeded From UniProt

complete

involved_in

GO:0009650

UV protection

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9QZD4
ensembl:ENSMUSP00000023206

P

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9QZD4
ensembl:ENSMUSP00000023206

P

Seeded From UniProt

complete

part_of

GO:0005669

transcription factor TFIID complex

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9QZD4
ensembl:ENSMUSP00000023206

C

Seeded From UniProt

complete

enables

GO:0001094

TFIID-class transcription factor complex binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9QZD4
ensembl:ENSMUSP00000023206

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR006166

F

Seeded From UniProt

complete

enables

GO:0003697

single-stranded DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR006167

F

Seeded From UniProt

complete

enables

GO:0004518

nuclease activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR006166

F

Seeded From UniProt

complete

enables

GO:0004520

endodeoxyribonuclease activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR006167

F

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR006167

P

Seeded From UniProt

complete

involved_in

GO:0070911

global genome nucleotide-excision repair

Reactome:R-HSA-5696399

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0036297

interstrand cross-link repair

Reactome:R-HSA-6783310

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0033683

nucleotide-excision repair, DNA incision

Reactome:R-HSA-5696400

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006296

nucleotide-excision repair, DNA incision, 5'-to lesion

Reactome:R-HSA-5690988

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006295

nucleotide-excision repair, DNA incision, 3'-to lesion

Reactome:R-HSA-5690990

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006293

nucleotide-excision repair, preincision complex stabilization

Reactome:R-HSA-5690991

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006283

transcription-coupled nucleotide-excision repair

Reactome:R-HSA-6781827

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

Reactome:R-HSA-6785986
Reactome:R-HSA-6785732
Reactome:R-HSA-6782224
Reactome:R-HSA-6782211
Reactome:R-HSA-6782204
Reactome:R-HSA-6782141
Reactome:R-HSA-5690991
Reactome:R-HSA-5690990
Reactome:R-HSA-5690988
Reactome:R-HSA-5690213
Reactome:R-HSA-5686657
Reactome:R-HSA-109955

ECO:0000304

author statement supported by traceable reference used in manual assertion












C

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0238

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

involved_in

GO:0006974

cellular response to DNA damage stimulus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0227

P

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0378

F

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0234

P

Seeded From UniProt

complete

enables

GO:0004518

nuclease activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0540

F

Seeded From UniProt

complete

enables

GO:0004519

endonuclease activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0255

F

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 1.3 Wu, Y et al. (2008) Human XPF controls TRF2 and telomere length maintenance through distinctive mechanisms. Mech. Ageing Dev. 129 602-10 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 2.4 2.5 Wu, Y et al. (2007) XPF with mutations in its conserved nuclease domain is defective in DNA repair but functions in TRF2-mediated telomere shortening. DNA Repair (Amst.) 6 157-66 PubMed GONUTS page
  3. 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 Zhu, XD et al. (2003) ERCC1/XPF removes the 3' overhang from uncapped telomeres and represses formation of telomeric DNA-containing double minute chromosomes. Mol. Cell 12 1489-98 PubMed GONUTS page
  4. 4.0 4.1 4.2 Motycka, TA et al. (2004) Physical and functional interaction between the XPF/ERCC1 endonuclease and hRad52. J. Biol. Chem. 279 13634-9 PubMed GONUTS page
  5. 5.0 5.1 5.2 5.3 McCutchen-Maloney, SL et al. (1999) Domain mapping of the DNA binding, endonuclease, and ERCC1 binding properties of the human DNA repair protein XPF. Biochemistry 38 9417-25 PubMed GONUTS page
  6. Mogi, S & Oh, DH (2006) gamma-H2AX formation in response to interstrand crosslinks requires XPF in human cells. DNA Repair (Amst.) 5 731-40 PubMed GONUTS page
  7. de Laat, WL et al. (1998) Mapping of interaction domains between human repair proteins ERCC1 and XPF. Nucleic Acids Res. 26 4146-52 PubMed GONUTS page
  8. 8.0 8.1 Chen, Z et al. (2004) Defining the function of xeroderma pigmentosum group F protein in psoralen interstrand cross-link-mediated DNA repair and mutagenesis. Biochem. J. 379 71-8 PubMed GONUTS page
  9. 9.0 9.1 9.2 Kumaresan, KR et al. (2002) Contribution of XPF functional domains to the 5' and 3' incisions produced at the site of a psoralen interstrand cross-link. Biochemistry 41 890-6 PubMed GONUTS page
  10. 10.0 10.1 Sijbers, AM et al. (1996) Xeroderma pigmentosum group F caused by a defect in a structure-specific DNA repair endonuclease. Cell 86 811-22 PubMed GONUTS page
  11. Svendsen, JM et al. (2009) Mammalian BTBD12/SLX4 assembles a Holliday junction resolvase and is required for DNA repair. Cell 138 63-77 PubMed GONUTS page
  12. Sridharan, D et al. (2003) Nonerythroid alphaII spectrin is required for recruitment of FANCA and XPF to nuclear foci induced by DNA interstrand cross-links. J. Cell. Sci. 116 823-35 PubMed GONUTS page
  13. 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  14. 14.0 14.1 Shannon, M et al. (1999) Characterization of the mouse Xpf DNA repair gene and differential expression during spermatogenesis. Genomics 62 427-35 PubMed GONUTS page
  15. Das, D et al. (2012) The structure of the XPF-ssDNA complex underscores the distinct roles of the XPF and ERCC1 helix- hairpin-helix domains in ss/ds DNA recognition. Structure 20 667-75 PubMed GONUTS page