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HUMAN:XPF
Contents
Species (Taxon ID) | Homo sapiens (Human). (9606) | |
Gene Name(s) | ERCC4 (synonyms: ERCC11, XPF) | |
Protein Name(s) | DNA repair endonuclease XPF
DNA excision repair protein ERCC-4 DNA repair protein complementing XP-F cells Xeroderma pigmentosum group F-complementing protein | |
External Links | ||
UniProt | Q92889 | |
EMBL | L77890 AF491814 AK289726 AC010401 BC142631 U64315 | |
CCDS | CCDS32390.1 | |
RefSeq | NP_005227.1 | |
UniGene | Hs.567265 | |
PDB | 1Z00 2A1J 2AQ0 2KN7 | |
PDBsum | 1Z00 2A1J 2AQ0 2KN7 | |
ProteinModelPortal | Q92889 | |
SMR | Q92889 | |
BioGrid | 108384 | |
DIP | DIP-42006N | |
IntAct | Q92889 | |
MINT | MINT-192303 | |
STRING | 9606.ENSP00000310520 | |
PhosphoSite | Q92889 | |
DMDM | 229463004 | |
MaxQB | Q92889 | |
PaxDb | Q92889 | |
PRIDE | Q92889 | |
DNASU | 2072 | |
Ensembl | ENST00000311895 ENST00000575156 | |
GeneID | 2072 | |
KEGG | hsa:2072 | |
UCSC | uc002dce.2 uc010bva.3 | |
CTD | 2072 | |
GeneCards | GC16P014014 | |
GeneReviews | ERCC4 | |
H-InvDB | HIX0038603 HIX0173284 | |
HGNC | HGNC:3436 | |
HPA | CAB000156 HPA045828 | |
MIM | 133520 278760 610965 615272 | |
neXtProt | NX_Q92889 | |
Orphanet | 90321 84 276264 | |
PharmGKB | PA27850 | |
eggNOG | COG1948 | |
GeneTree | ENSGT00390000004394 | |
HOGENOM | HOG000202204 | |
HOVERGEN | HBG051500 | |
InParanoid | Q92889 | |
KO | K10848 | |
OMA | QQSIVVD | |
OrthoDB | EOG7VTDM8 | |
PhylomeDB | Q92889 | |
TreeFam | TF101234 | |
Reactome | REACT_1941 REACT_2222 REACT_257 REACT_311 | |
EvolutionaryTrace | Q92889 | |
GeneWiki | ERCC4 | |
GenomeRNAi | 2072 | |
NextBio | 35462247 | |
PRO | PR:Q92889 | |
Proteomes | UP000005640 | |
Bgee | Q92889 | |
CleanEx | HS_ERCC4 | |
ExpressionAtlas | Q92889 | |
Genevestigator | Q92889 | |
GO | GO:0000781 GO:0000784 GO:0005654 GO:0000109 GO:0000110 GO:0005634 GO:0005669 GO:0003684 GO:0004520 GO:0008022 GO:0047485 GO:0003697 GO:0000014 GO:0000737 GO:0006281 GO:0000724 GO:0032205 GO:0006289 GO:1901255 GO:0000718 GO:0033683 GO:0006295 GO:0006296 GO:0000712 GO:0009411 GO:0000723 GO:0010834 GO:0006283 GO:0009650 | |
Gene3D | 3.40.50.10130 | |
InterPro | IPR020819 IPR006166 IPR006167 IPR011335 IPR010994 | |
Pfam | PF02732 | |
SMART | SM00891 | |
SUPFAM | SSF47781 SSF52980 | |
TIGRFAMs | TIGR00596 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
involved_in |
GO:1905768 |
negative regulation of double-stranded telomeric DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
regulates_activity_of:(UniProtKB:Q15554) |
Seeded From UniProt |
complete | ||
NOT|involved_in |
GO:0051974 |
negative regulation of telomerase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
NOT|enables |
GO:0010521 |
telomerase inhibitor activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:1904357 |
negative regulation of telomere maintenance via telomere lengthening |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0070522 |
ERCC4-ERCC1 complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0004520 |
endodeoxyribonuclease activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0034644 |
cellular response to UV |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000723 |
telomere maintenance |
ECO:0000316 |
genetic interaction evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0061819 |
telomeric DNA-containing double minutes formation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1905765 |
negative regulation of protection from non-homologous end joining at telomere |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006303 |
double-strand break repair via nonhomologous end joining |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
occurs_at:(GO:0000784) |
Seeded From UniProt |
complete | ||
part_of |
GO:0070522 |
ERCC4-ERCC1 complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
contributes_to |
GO:1990599 |
3' overhang single-stranded DNA endodeoxyribonuclease activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
|
Seeded From UniProt |
complete | ||
part_of |
GO:0000781 |
chromosome, telomeric region |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000723 |
telomere maintenance |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0047485 |
protein N-terminus binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
contributes_to |
GO:0003677 |
DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0033683 |
nucleotide-excision repair, DNA incision |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032205 |
negative regulation of telomere maintenance |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009411 |
response to UV |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0008022 |
protein C-terminus binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006296 |
nucleotide-excision repair, DNA incision, 5'-to lesion |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006296 |
nucleotide-excision repair, DNA incision, 5'-to lesion |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006295 |
nucleotide-excision repair, DNA incision, 3'-to lesion |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006289 |
nucleotide-excision repair |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0004520 |
endodeoxyribonuclease activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0004520 |
endodeoxyribonuclease activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
contributes_to |
GO:0004520 |
endodeoxyribonuclease activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003697 |
single-stranded DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003684 |
damaged DNA binding |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0000784 |
nuclear chromosome, telomeric region |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000724 |
double-strand break repair via homologous recombination |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0000110 |
nucleotide-excision repair factor 1 complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:1901255 |
nucleotide-excision repair involved in interstrand cross-link repair |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000015911 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006296 |
nucleotide-excision repair, DNA incision, 5'-to lesion |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000015911 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0003697 |
single-stranded DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000015911 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003684 |
damaged DNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000015911 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000724 |
double-strand break repair via homologous recombination |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000015911 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000712 |
resolution of meiotic recombination intermediates |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0002707 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0000110 |
nucleotide-excision repair factor 1 complex |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000015911 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0000014 |
single-stranded DNA endodeoxyribonuclease activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000015911 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006289 |
nucleotide-excision repair |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0000109 |
nucleotide-excision repair complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051974 |
negative regulation of telomerase activity |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0010521 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0010506 |
regulation of autophagy |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9QZD4 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0009650 |
UV protection |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9QZD4 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9QZD4 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005669 |
transcription factor TFIID complex |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9QZD4 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0001094 |
TFIID-class transcription factor complex binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9QZD4 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003697 |
single-stranded DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0004518 |
nuclease activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0004520 |
endodeoxyribonuclease activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0070911 |
global genome nucleotide-excision repair |
Reactome:R-HSA-5696399 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0036297 |
interstrand cross-link repair |
Reactome:R-HSA-6783310 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0033683 |
nucleotide-excision repair, DNA incision |
Reactome:R-HSA-5696400 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006296 |
nucleotide-excision repair, DNA incision, 5'-to lesion |
Reactome:R-HSA-5690988 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006295 |
nucleotide-excision repair, DNA incision, 3'-to lesion |
Reactome:R-HSA-5690990 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006293 |
nucleotide-excision repair, preincision complex stabilization |
Reactome:R-HSA-5690991 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006283 |
transcription-coupled nucleotide-excision repair |
Reactome:R-HSA-6781827 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005654 |
nucleoplasm |
Reactome:R-HSA-6785986 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0004518 |
nuclease activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0004519 |
endonuclease activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 1.3 Wu, Y et al. (2008) Human XPF controls TRF2 and telomere length maintenance through distinctive mechanisms. Mech. Ageing Dev. 129 602-10 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 Wu, Y et al. (2007) XPF with mutations in its conserved nuclease domain is defective in DNA repair but functions in TRF2-mediated telomere shortening. DNA Repair (Amst.) 6 157-66 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 Zhu, XD et al. (2003) ERCC1/XPF removes the 3' overhang from uncapped telomeres and represses formation of telomeric DNA-containing double minute chromosomes. Mol. Cell 12 1489-98 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 Motycka, TA et al. (2004) Physical and functional interaction between the XPF/ERCC1 endonuclease and hRad52. J. Biol. Chem. 279 13634-9 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 5.3 McCutchen-Maloney, SL et al. (1999) Domain mapping of the DNA binding, endonuclease, and ERCC1 binding properties of the human DNA repair protein XPF. Biochemistry 38 9417-25 PubMed GONUTS page
- ↑ Mogi, S & Oh, DH (2006) gamma-H2AX formation in response to interstrand crosslinks requires XPF in human cells. DNA Repair (Amst.) 5 731-40 PubMed GONUTS page
- ↑ de Laat, WL et al. (1998) Mapping of interaction domains between human repair proteins ERCC1 and XPF. Nucleic Acids Res. 26 4146-52 PubMed GONUTS page
- ↑ 8.0 8.1 Chen, Z et al. (2004) Defining the function of xeroderma pigmentosum group F protein in psoralen interstrand cross-link-mediated DNA repair and mutagenesis. Biochem. J. 379 71-8 PubMed GONUTS page
- ↑ 9.0 9.1 9.2 Kumaresan, KR et al. (2002) Contribution of XPF functional domains to the 5' and 3' incisions produced at the site of a psoralen interstrand cross-link. Biochemistry 41 890-6 PubMed GONUTS page
- ↑ 10.0 10.1 Sijbers, AM et al. (1996) Xeroderma pigmentosum group F caused by a defect in a structure-specific DNA repair endonuclease. Cell 86 811-22 PubMed GONUTS page
- ↑ Svendsen, JM et al. (2009) Mammalian BTBD12/SLX4 assembles a Holliday junction resolvase and is required for DNA repair. Cell 138 63-77 PubMed GONUTS page
- ↑ Sridharan, D et al. (2003) Nonerythroid alphaII spectrin is required for recruitment of FANCA and XPF to nuclear foci induced by DNA interstrand cross-links. J. Cell. Sci. 116 823-35 PubMed GONUTS page
- ↑ 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.7 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 14.0 14.1 Shannon, M et al. (1999) Characterization of the mouse Xpf DNA repair gene and differential expression during spermatogenesis. Genomics 62 427-35 PubMed GONUTS page
- ↑ Das, D et al. (2012) The structure of the XPF-ssDNA complex underscores the distinct roles of the XPF and ERCC1 helix- hairpin-helix domains in ss/ds DNA recognition. Structure 20 667-75 PubMed GONUTS page
c
d
e
n
- GO:0032205 ! negative regulation of telomere maintenance
- GO:1905765 ! negative regulation of protection from non-homologous end joining at telomere
- GO:1904357 ! negative regulation of telomere maintenance via telomere lengthening
- GO:0000784 ! nuclear chromosome, telomeric region
- GO:0004518 ! nuclease activity
- GO:0005654 ! nucleoplasm
- GO:0000110 ! nucleotide-excision repair factor 1 complex
- GO:1901255 ! nucleotide-excision repair involved in interstrand cross-link repair
- GO:0006289 ! nucleotide-excision repair
- GO:0000109 ! nucleotide-excision repair complex
- GO:0006293 ! nucleotide-excision repair, preincision complex stabilization
- GO:0005634 ! nucleus
o
- GO:1905768 ! obsolete negative regulation of double-stranded telomeric DNA binding
- GO:0051974 ! obsolete negative regulation of telomerase activity
- GO:0006296 ! obsolete nucleotide-excision repair, DNA incision, 5'-to lesion
- GO:0033683 ! obsolete nucleotide-excision repair, DNA incision
- GO:0006295 ! obsolete nucleotide-excision repair, DNA incision, 3'-to lesion
- GO:0008022 ! obsolete protein C-terminus binding
- GO:0047485 ! obsolete protein N-terminus binding
p
r
s
t
- GO:0010521 ! telomerase inhibitor activity
- GO:0000723 ! telomere maintenance
- GO:0061819 ! telomeric DNA-containing double minutes formation
- GO:0001094 ! TFIID-class transcription factor complex binding
- GO:0005669 ! transcription factor TFIID complex
- GO:0006283 ! transcription-coupled nucleotide-excision repair