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HUMAN:VIME
Contents
Species (Taxon ID) | Homo sapiens (Human). (9606) | |
Gene Name(s) | VIM | |
Protein Name(s) | Vimentin | |
External Links | ||
UniProt | P08670 | |
EMBL | M14144 X56134 AF328728 Z19554 AK056766 AK097336 AK290643 CR407690 AK222507 AK222602 EF445046 EF445046 AL133415 CH471072 CH471072 BC000163 BC030573 BC066956 X16478 M18895 M18888 M18889 M18890 M18891 M18892 M18893 M18894 M25246 | |
CCDS | CCDS7120.1 | |
PIR | S13115 | |
RefSeq | NP_003371.2 XP_006717563.1 | |
UniGene | Hs.455493 Hs.691131 | |
PDB | 1GK4 1GK6 1GK7 3G1E 3KLT 3S4R 3SSU 3SWK 3TRT 3UF1 4MCY 4MCZ 4MD0 4MD5 4MDI 4MDJ | |
PDBsum | 1GK4 1GK6 1GK7 3G1E 3KLT 3S4R 3SSU 3SWK 3TRT 3UF1 4MCY 4MCZ 4MD0 4MD5 4MDI 4MDJ | |
ProteinModelPortal | P08670 | |
SMR | P08670 | |
BioGrid | 113272 | |
DIP | DIP-32507N | |
IntAct | P08670 | |
MINT | MINT-118802 | |
PhosphoSite | P08670 | |
DMDM | 55977767 | |
DOSAC-COBS-2DPAGE | P08670 | |
OGP | P08670 | |
REPRODUCTION-2DPAGE | IPI00418471 P08670 | |
SWISS-2DPAGE | P08670 | |
UCD-2DPAGE | P08670 | |
MaxQB | P08670 | |
PaxDb | P08670 | |
PeptideAtlas | P08670 | |
PRIDE | P08670 | |
DNASU | 7431 | |
Ensembl | ENST00000224237 ENST00000544301 | |
GeneID | 7431 | |
KEGG | hsa:7431 | |
UCSC | uc001iou.2 | |
CTD | 7431 | |
GeneCards | GC10P017270 | |
H-InvDB | HIX0035657 | |
HGNC | HGNC:12692 | |
HPA | CAB000080 CAB058687 HPA001762 | |
MIM | 116300 193060 | |
neXtProt | NX_P08670 | |
Orphanet | 98984 | |
PharmGKB | PA37311 | |
eggNOG | NOG146769 | |
HOVERGEN | HBG013015 | |
InParanoid | P08670 | |
KO | K07606 | |
OMA | INTEFKA | |
OrthoDB | EOG7FV3Q8 | |
PhylomeDB | P08670 | |
TreeFam | TF330122 | |
Reactome | REACT_13541 REACT_16969 | |
ChiTaRS | VIM | |
EvolutionaryTrace | P08670 | |
GeneWiki | Vimentin | |
GenomeRNAi | 7431 | |
NextBio | 29104 | |
PMAP-CutDB | P08670 | |
PRO | PR:P08670 | |
Proteomes | UP000005640 | |
Bgee | P08670 | |
ExpressionAtlas | P08670 | |
Genevestigator | P08670 | |
GO | GO:0031252 GO:0005737 GO:0005856 GO:0005829 GO:0070062 GO:0005925 GO:0005882 GO:0045111 GO:0043005 GO:0005777 GO:0005886 GO:0003725 GO:0001948 GO:0042802 GO:0008022 GO:0097110 GO:0005200 GO:0005212 GO:0006915 GO:0014002 GO:0060020 GO:0006921 GO:0006928 GO:0045109 GO:0070307 GO:0030049 GO:0010977 GO:0010628 GO:0016032 | |
InterPro | IPR001664 IPR006821 IPR018039 IPR027699 | |
PANTHER | PTHR23239 PTHR23239:SF27 | |
Pfam | PF00038 PF04732 | |
PROSITE | PS00226 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
involved_in |
GO:0071222 |
cellular response to lipopolysaccharide |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0071225 |
cellular response to muramyl dipeptide |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0043488 |
regulation of mRNA stability |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045727 |
positive regulation of translation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032967 |
positive regulation of collagen biosynthetic process |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005829 |
cytosol |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0019904 |
protein domain specific binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:1990904 |
ribonucleoprotein complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005844 |
polysome |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005844 |
polysome |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
|
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:1990254 |
keratin filament binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005925 |
focal adhesion |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
part_of:(CL:0000057) |
Seeded From UniProt |
complete | ||
part_of |
GO:0070062 |
extracellular exosome |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
part_of:(CL:0000639) |
Seeded From UniProt |
complete | ||
part_of |
GO:0005882 |
intermediate filament |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0097110 |
scaffold protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0097110 |
scaffold protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0070062 |
extracellular exosome |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
part_of:(CL:0002367) |
Seeded From UniProt |
complete | ||
part_of |
GO:0005882 |
intermediate filament |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005777 |
peroxisome |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
|
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0005200 |
structural constituent of cytoskeleton |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005856 |
cytoskeleton |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003725 |
double-stranded RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0071346 |
cellular response to interferon-gamma |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P20152 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0070307 |
lens fiber cell development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P20152 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0060395 |
SMAD protein signal transduction |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P20152 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0060020 |
Bergmann glial cell differentiation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P20152 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0045335 |
phagocytic vesicle |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P20152 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045109 |
intermediate filament organization |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P20152 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045103 |
intermediate filament-based process |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P20152 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0043005 |
neuron projection |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P20152 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0042995 |
cell projection |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P20152 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0031252 |
cell leading edge |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P20152 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0014002 |
astrocyte development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P20152 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0010977 |
negative regulation of neuron projection development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P20152 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0010628 |
positive regulation of gene expression |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P20152 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005886 |
plasma membrane |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P20152 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005882 |
intermediate filament |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P20152 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P20152 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0005212 |
structural constituent of eye lens |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P20152 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0005198 |
structural molecule activity |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P20152 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0005198 |
structural molecule activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005882 |
intermediate filament |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005856 |
cytoskeleton |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005829 |
cytosol |
Reactome:R-HSA-390597 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
involved_in |
GO:0030049 |
muscle filament sliding |
Reactome:R-HSA-390522 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0019221 |
cytokine-mediated signaling pathway |
Reactome:R-HSA-6785807 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005856 |
cytoskeleton |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005882 |
intermediate filament |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0016032 |
viral process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0016363 |
nuclear matrix |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Thiébaut, R et al. (2016) Characterization and Genetic Analyses of New Genes Coding for NOD2 Interacting Proteins. PLoS ONE 11 e0165420 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 Challa, AA & Stefanovic, B (2011) A novel role of vimentin filaments: binding and stabilization of collagen mRNAs. Mol. Cell. Biol. 31 3773-89 PubMed GONUTS page
- ↑ Cai, L et al. (2010) Nonmuscle myosin-dependent synthesis of type I collagen. J. Mol. Biol. 401 564-78 PubMed GONUTS page
- ↑ Yan, T et al. (2017) Electric field-induced suppression of PTEN drives epithelial-to-mesenchymal transition via mTORC1 activation. J. Dermatol. Sci. 85 96-105 PubMed GONUTS page
- ↑ Ghosh, S et al. (2011) Association of filamin A and vimentin with hepatitis C virus proteins in infected human hepatocytes. J. Viral Hepat. 18 e568-77 PubMed GONUTS page
- ↑ 6.0 6.1 Kang, SM et al. (2005) Proteomic profiling of cellular proteins interacting with the hepatitis C virus core protein. Proteomics 5 2227-37 PubMed GONUTS page
- ↑ Kuo, JC et al. (2011) Analysis of the myosin-II-responsive focal adhesion proteome reveals a role for β-Pix in negative regulation of focal adhesion maturation. Nat. Cell Biol. 13 383-93 PubMed GONUTS page
- ↑ Buschow, SI et al. () MHC class II-associated proteins in B-cell exosomes and potential functional implications for exosome biogenesis. Immunol. Cell Biol. 88 851-6 PubMed GONUTS page
- ↑ 9.0 9.1 Goel, RK et al. (2018) Phosphoproteomics Analysis Identifies Novel Candidate Substrates of the Nonreceptor Tyrosine Kinase, rc-elated Kinase Lacking C-terminal Regulatory Tyrosine and N-terminal yristoylation ites (SRMS). Mol. Cell Proteomics 17 925-947 PubMed GONUTS page
- ↑ 10.0 10.1 Hofmann, I et al. (2000) Interaction of plakophilins with desmoplakin and intermediate filament proteins: an in vitro analysis. J. Cell. Sci. 113 ( Pt 13) 2471-83 PubMed GONUTS page
- ↑ Stamer, WD et al. (2011) Protein profile of exosomes from trabecular meshwork cells. J Proteomics 74 796-804 PubMed GONUTS page
- ↑ 12.0 12.1 Strelkov, SV et al. (2002) Conserved segments 1A and 2B of the intermediate filament dimer: their atomic structures and role in filament assembly. EMBO J. 21 1255-66 PubMed GONUTS page
- ↑ Nenicu, A et al. (2007) Peroxisomes in human and mouse testis: differential expression of peroxisomal proteins in germ cells and distinct somatic cell types of the testis. Biol. Reprod. 77 1060-72 PubMed GONUTS page
- ↑ Rasmussen, RK et al. () Two-dimensional electrophoretic analysis of human breast carcinoma proteins: mapping of proteins that bind to the SH3 domain of mixed lineage kinase MLK2. Electrophoresis 18 588-98 PubMed GONUTS page
- ↑ Stefansson, B & Brautigan, DL (2006) Protein phosphatase 6 subunit with conserved Sit4-associated protein domain targets IkappaBepsilon. J. Biol. Chem. 281 22624-34 PubMed GONUTS page
- ↑ Watanabe, A et al. (2011) Raftlin is involved in the nucleocapture complex to induce poly(I:C)-mediated TLR3 activation. J. Biol. Chem. 286 10702-11 PubMed GONUTS page
- ↑ Chernyatina, AA et al. (2012) Atomic structure of the vimentin central α-helical domain and its implications for intermediate filament assembly. Proc. Natl. Acad. Sci. U.S.A. 109 13620-5 PubMed GONUTS page
- ↑ Vinayagam, A et al. (2011) A directed protein interaction network for investigating intracellular signal transduction. Sci Signal 4 rs8 PubMed GONUTS page
- ↑ Sokolova, AV et al. (2006) Monitoring intermediate filament assembly by small-angle x-ray scattering reveals the molecular architecture of assembly intermediates. Proc. Natl. Acad. Sci. U.S.A. 103 16206-11 PubMed GONUTS page
- ↑ Stelzl, U et al. (2005) A human protein-protein interaction network: a resource for annotating the proteome. Cell 122 957-68 PubMed GONUTS page
- ↑ Goehler, H et al. (2004) A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease. Mol. Cell 15 853-65 PubMed GONUTS page
- ↑ Bruneel, A et al. (2005) Proteomics of human umbilical vein endothelial cells applied to etoposide-induced apoptosis. Proteomics 5 3876-84 PubMed GONUTS page
c
- Catarrhini
- GO:0071257 ! cellular response to electrical stimulus
- GO:0071346 ! cellular response to type II interferon
- GO:0071225 ! cellular response to muramyl dipeptide
- GO:0071222 ! cellular response to lipopolysaccharide
- GO:0031252 ! cell leading edge
- GO:0042995 ! cell projection
- Chordata
- Craniata
- GO:0019221 ! cytokine-mediated signaling pathway
- GO:0005737 ! cytoplasm
- GO:0005856 ! cytoskeleton
- GO:0005829 ! cytosol
i
n
p
- GO:0005777 ! peroxisome
- GO:0045335 ! phagocytic vesicle
- GO:0005886 ! plasma membrane
- GO:0045727 ! positive regulation of translation
- GO:0010628 ! positive regulation of gene expression
- GO:0032967 ! positive regulation of collagen biosynthetic process
- Primates
- GO:0019904 ! protein domain specific binding
s