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HUMAN:VIME

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Species (Taxon ID) Homo sapiens (Human). (9606)
Gene Name(s) VIM
Protein Name(s) Vimentin
External Links
UniProt P08670
EMBL M14144
X56134
AF328728
Z19554
AK056766
AK097336
AK290643
CR407690
AK222507
AK222602
EF445046
EF445046
AL133415
CH471072
CH471072
BC000163
BC030573
BC066956
X16478
M18895
M18888
M18889
M18890
M18891
M18892
M18893
M18894
M25246
CCDS CCDS7120.1
PIR S13115
RefSeq NP_003371.2
XP_006717563.1
UniGene Hs.455493
Hs.691131
PDB 1GK4
1GK6
1GK7
3G1E
3KLT
3S4R
3SSU
3SWK
3TRT
3UF1
4MCY
4MCZ
4MD0
4MD5
4MDI
4MDJ
PDBsum 1GK4
1GK6
1GK7
3G1E
3KLT
3S4R
3SSU
3SWK
3TRT
3UF1
4MCY
4MCZ
4MD0
4MD5
4MDI
4MDJ
ProteinModelPortal P08670
SMR P08670
BioGrid 113272
DIP DIP-32507N
IntAct P08670
MINT MINT-118802
PhosphoSite P08670
DMDM 55977767
DOSAC-COBS-2DPAGE P08670
OGP P08670
REPRODUCTION-2DPAGE IPI00418471
P08670
SWISS-2DPAGE P08670
UCD-2DPAGE P08670
MaxQB P08670
PaxDb P08670
PeptideAtlas P08670
PRIDE P08670
DNASU 7431
Ensembl ENST00000224237
ENST00000544301
GeneID 7431
KEGG hsa:7431
UCSC uc001iou.2
CTD 7431
GeneCards GC10P017270
H-InvDB HIX0035657
HGNC HGNC:12692
HPA CAB000080
CAB058687
HPA001762
MIM 116300
193060
neXtProt NX_P08670
Orphanet 98984
PharmGKB PA37311
eggNOG NOG146769
HOVERGEN HBG013015
InParanoid P08670
KO K07606
OMA INTEFKA
OrthoDB EOG7FV3Q8
PhylomeDB P08670
TreeFam TF330122
Reactome REACT_13541
REACT_16969
ChiTaRS VIM
EvolutionaryTrace P08670
GeneWiki Vimentin
GenomeRNAi 7431
NextBio 29104
PMAP-CutDB P08670
PRO PR:P08670
Proteomes UP000005640
Bgee P08670
ExpressionAtlas P08670
Genevestigator P08670
GO GO:0031252
GO:0005737
GO:0005856
GO:0005829
GO:0070062
GO:0005925
GO:0005882
GO:0045111
GO:0043005
GO:0005777
GO:0005886
GO:0003725
GO:0001948
GO:0042802
GO:0008022
GO:0097110
GO:0005200
GO:0005212
GO:0006915
GO:0014002
GO:0060020
GO:0006921
GO:0006928
GO:0045109
GO:0070307
GO:0030049
GO:0010977
GO:0010628
GO:0016032
InterPro IPR001664
IPR006821
IPR018039
IPR027699
PANTHER PTHR23239
PTHR23239:SF27
Pfam PF00038
PF04732
PROSITE PS00226

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:0071222

cellular response to lipopolysaccharide

PMID:27812135[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0071225

cellular response to muramyl dipeptide

PMID:27812135[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0043488

regulation of mRNA stability

PMID:21746880[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045727

positive regulation of translation

PMID:21746880[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0032967

positive regulation of collagen biosynthetic process

PMID:21746880[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

PMID:21746880[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0019904

protein domain specific binding

PMID:21746880[2]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q9BRS8

F

Seeded From UniProt

complete

part_of

GO:1990904

ribonucleoprotein complex

PMID:21746880[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005844

polysome

PMID:21746880[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005844

polysome

PMID:20603131[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:27919618[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:21914078[5]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:15846844[6]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:1990254

keratin filament binding

PMID:15846844[6]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P05787

F

Seeded From UniProt

complete

part_of

GO:0005925

focal adhesion

PMID:21423176[7]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(CL:0000057)

Seeded From UniProt

complete

part_of

GO:0070062

extracellular exosome

PMID:20458337[8]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(CL:0000639)

Seeded From UniProt

complete

part_of

GO:0005882

intermediate filament

PMID:29496907[9]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:29496907[9]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0097110

scaffold protein binding

PMID:10852826[10]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q99959

F

Seeded From UniProt

complete

enables

GO:0097110

scaffold protein binding

PMID:10852826[10]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q13835

F

Seeded From UniProt

complete

part_of

GO:0070062

extracellular exosome

PMID:21362503[11]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(CL:0002367)

Seeded From UniProt

complete

part_of

GO:0005882

intermediate filament

PMID:11889032[12]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005777

peroxisome

PMID:17881773[13]

ECO:0000314

direct assay evidence used in manual assertion

C

  • part_of:(UBERON:0000473)
  • part_of:(CL:0000216)

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:9150946[14]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0005200

structural constituent of cytoskeleton

PMID:11889032[12]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0005856

cytoskeleton

PMID:16769727[15]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0003725

double-stranded RNA binding

PMID:21266579[16]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:22869704[17]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P08670

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:21900206[18]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P08670

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:17050693[19]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P08670

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:16169070[20]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P08670

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:15383276[21]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P08670

F

Seeded From UniProt

complete

involved_in

GO:0071346

cellular response to interferon-gamma

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P20152
ensembl:ENSMUSP00000028062

P

Seeded From UniProt

complete

involved_in

GO:0070307

lens fiber cell development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P20152
ensembl:ENSMUSP00000028062

P

Seeded From UniProt

complete

involved_in

GO:0060395

SMAD protein signal transduction

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P20152
ensembl:ENSMUSP00000028062

P

Seeded From UniProt

complete

involved_in

GO:0060020

Bergmann glial cell differentiation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P20152
ensembl:ENSMUSP00000028062

P

Seeded From UniProt

complete

part_of

GO:0045335

phagocytic vesicle

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P20152
ensembl:ENSMUSP00000028062

C

Seeded From UniProt

complete

involved_in

GO:0045109

intermediate filament organization

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P20152
ensembl:ENSMUSP00000028062

P

Seeded From UniProt

complete

involved_in

GO:0045103

intermediate filament-based process

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P20152
ensembl:ENSMUSP00000028062

P

Seeded From UniProt

complete

part_of

GO:0043005

neuron projection

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P20152
ensembl:ENSMUSP00000028062

C

Seeded From UniProt

complete

part_of

GO:0042995

cell projection

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P20152
ensembl:ENSMUSP00000028062

C

Seeded From UniProt

complete

part_of

GO:0031252

cell leading edge

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P20152
ensembl:ENSMUSP00000028062

C

Seeded From UniProt

complete

involved_in

GO:0014002

astrocyte development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P20152
ensembl:ENSMUSP00000028062

P

Seeded From UniProt

complete

involved_in

GO:0010977

negative regulation of neuron projection development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P20152
ensembl:ENSMUSP00000028062

P

Seeded From UniProt

complete

involved_in

GO:0010628

positive regulation of gene expression

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P20152
ensembl:ENSMUSP00000028062

P

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P20152
ensembl:ENSMUSP00000028062

C

Seeded From UniProt

complete

part_of

GO:0005882

intermediate filament

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P20152
ensembl:ENSMUSP00000028062

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P20152
ensembl:ENSMUSP00000028062

C

Seeded From UniProt

complete

enables

GO:0005212

structural constituent of eye lens

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P20152
ensembl:ENSMUSP00000028062

F

Seeded From UniProt

complete

enables

GO:0005198

structural molecule activity

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P20152
ensembl:ENSMUSP00000028062

F

Seeded From UniProt

complete

enables

GO:0005198

structural molecule activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001664

F

Seeded From UniProt

complete

part_of

GO:0005882

intermediate filament

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001664
InterPro:IPR006821
InterPro:IPR027699

C

Seeded From UniProt

complete

part_of

GO:0005856

cytoskeleton

PMID:16130169[22]

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

Reactome:R-HSA-390597
Reactome:R-HSA-390595
Reactome:R-HSA-390593
Reactome:R-HSA-350319
Reactome:R-HSA-350318
Reactome:R-HSA-201628
Reactome:R-HSA-6790041
Reactome:R-HSA-390598

ECO:0000304

author statement supported by traceable reference used in manual assertion








C

Seeded From UniProt

complete

involved_in

GO:0030049

muscle filament sliding

Reactome:R-HSA-390522

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0019221

cytokine-mediated signaling pathway

Reactome:R-HSA-6785807

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539

C

Seeded From UniProt

complete

part_of

GO:0005856

cytoskeleton

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0206
UniProtKB-SubCell:SL-0090

C

Seeded From UniProt

complete

part_of

GO:0005882

intermediate filament

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0403

C

Seeded From UniProt

complete

involved_in

GO:0016032

viral process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0945

P

Seeded From UniProt

complete

part_of

GO:0016363

nuclear matrix

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0181

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Thiébaut, R et al. (2016) Characterization and Genetic Analyses of New Genes Coding for NOD2 Interacting Proteins. PLoS ONE 11 e0165420 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 2.4 2.5 2.6 Challa, AA & Stefanovic, B (2011) A novel role of vimentin filaments: binding and stabilization of collagen mRNAs. Mol. Cell. Biol. 31 3773-89 PubMed GONUTS page
  3. Cai, L et al. (2010) Nonmuscle myosin-dependent synthesis of type I collagen. J. Mol. Biol. 401 564-78 PubMed GONUTS page
  4. Yan, T et al. (2017) Electric field-induced suppression of PTEN drives epithelial-to-mesenchymal transition via mTORC1 activation. J. Dermatol. Sci. 85 96-105 PubMed GONUTS page
  5. Ghosh, S et al. (2011) Association of filamin A and vimentin with hepatitis C virus proteins in infected human hepatocytes. J. Viral Hepat. 18 e568-77 PubMed GONUTS page
  6. 6.0 6.1 Kang, SM et al. (2005) Proteomic profiling of cellular proteins interacting with the hepatitis C virus core protein. Proteomics 5 2227-37 PubMed GONUTS page
  7. Kuo, JC et al. (2011) Analysis of the myosin-II-responsive focal adhesion proteome reveals a role for β-Pix in negative regulation of focal adhesion maturation. Nat. Cell Biol. 13 383-93 PubMed GONUTS page
  8. Buschow, SI et al. () MHC class II-associated proteins in B-cell exosomes and potential functional implications for exosome biogenesis. Immunol. Cell Biol. 88 851-6 PubMed GONUTS page
  9. 9.0 9.1 Goel, RK et al. (2018) Phosphoproteomics Analysis Identifies Novel Candidate Substrates of the Nonreceptor Tyrosine Kinase, rc-elated Kinase Lacking C-terminal Regulatory Tyrosine and N-terminal yristoylation ites (SRMS). Mol. Cell Proteomics 17 925-947 PubMed GONUTS page
  10. 10.0 10.1 Hofmann, I et al. (2000) Interaction of plakophilins with desmoplakin and intermediate filament proteins: an in vitro analysis. J. Cell. Sci. 113 ( Pt 13) 2471-83 PubMed GONUTS page
  11. Stamer, WD et al. (2011) Protein profile of exosomes from trabecular meshwork cells. J Proteomics 74 796-804 PubMed GONUTS page
  12. 12.0 12.1 Strelkov, SV et al. (2002) Conserved segments 1A and 2B of the intermediate filament dimer: their atomic structures and role in filament assembly. EMBO J. 21 1255-66 PubMed GONUTS page
  13. Nenicu, A et al. (2007) Peroxisomes in human and mouse testis: differential expression of peroxisomal proteins in germ cells and distinct somatic cell types of the testis. Biol. Reprod. 77 1060-72 PubMed GONUTS page
  14. Rasmussen, RK et al. () Two-dimensional electrophoretic analysis of human breast carcinoma proteins: mapping of proteins that bind to the SH3 domain of mixed lineage kinase MLK2. Electrophoresis 18 588-98 PubMed GONUTS page
  15. Stefansson, B & Brautigan, DL (2006) Protein phosphatase 6 subunit with conserved Sit4-associated protein domain targets IkappaBepsilon. J. Biol. Chem. 281 22624-34 PubMed GONUTS page
  16. Watanabe, A et al. (2011) Raftlin is involved in the nucleocapture complex to induce poly(I:C)-mediated TLR3 activation. J. Biol. Chem. 286 10702-11 PubMed GONUTS page
  17. Chernyatina, AA et al. (2012) Atomic structure of the vimentin central α-helical domain and its implications for intermediate filament assembly. Proc. Natl. Acad. Sci. U.S.A. 109 13620-5 PubMed GONUTS page
  18. Vinayagam, A et al. (2011) A directed protein interaction network for investigating intracellular signal transduction. Sci Signal 4 rs8 PubMed GONUTS page
  19. Sokolova, AV et al. (2006) Monitoring intermediate filament assembly by small-angle x-ray scattering reveals the molecular architecture of assembly intermediates. Proc. Natl. Acad. Sci. U.S.A. 103 16206-11 PubMed GONUTS page
  20. Stelzl, U et al. (2005) A human protein-protein interaction network: a resource for annotating the proteome. Cell 122 957-68 PubMed GONUTS page
  21. Goehler, H et al. (2004) A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease. Mol. Cell 15 853-65 PubMed GONUTS page
  22. Bruneel, A et al. (2005) Proteomics of human umbilical vein endothelial cells applied to etoposide-induced apoptosis. Proteomics 5 3876-84 PubMed GONUTS page