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HUMAN:TDG
Contents
Species (Taxon ID) | Homo sapiens (Human). (9606) | |
Gene Name(s) | TDG | |
Protein Name(s) | G/T mismatch-specific thymine DNA glycosylase
Thymine-DNA glycosylase hTDG | |
External Links | ||
UniProt | Q13569 | |
EMBL | U51166 AF545435 AC078819 BC037557 | |
CCDS | CCDS9095.1 | |
RefSeq | NP_003202.3 | |
UniGene | Hs.584809 | |
PDB | 1WYW 2D07 2RBA 3UFJ 3UO7 3UOB 4FNC 4JGC | |
PDBsum | 1WYW 2D07 2RBA 3UFJ 3UO7 3UOB 4FNC 4JGC | |
DisProt | DP00719 | |
ProteinModelPortal | Q13569 | |
SMR | Q13569 | |
BioGrid | 112855 | |
DIP | DIP-32709N | |
IntAct | Q13569 | |
MINT | MINT-1182514 | |
STRING | 9606.ENSP00000376611 | |
PhosphoSite | Q13569 | |
DMDM | 46397791 | |
MaxQB | Q13569 | |
PaxDb | Q13569 | |
PRIDE | Q13569 | |
Ensembl | ENST00000392872 | |
GeneID | 6996 | |
KEGG | hsa:6996 | |
UCSC | uc001tkg.3 | |
CTD | 6996 | |
GeneCards | GC12P104359 | |
H-InvDB | HIX0026376 | |
HGNC | HGNC:11700 | |
HPA | HPA052263 | |
MIM | 601423 | |
neXtProt | NX_Q13569 | |
PharmGKB | PA36419 | |
eggNOG | COG3663 | |
GeneTree | ENSGT00390000000987 | |
HOGENOM | HOG000220820 | |
HOVERGEN | HBG003685 | |
InParanoid | Q13569 | |
KO | K03649 | |
OMA | NGQWMTQ | |
OrthoDB | EOG790G1Z | |
PhylomeDB | Q13569 | |
TreeFam | TF328764 | |
Reactome | REACT_1064 REACT_200682 REACT_702 | |
ChiTaRS | TDG | |
EvolutionaryTrace | Q13569 | |
GeneWiki | Thymine-DNA_glycosylase | |
GenomeRNAi | 6996 | |
NextBio | 27327 | |
PRO | PR:Q13569 | |
Proteomes | UP000005640 | |
Bgee | Q13569 | |
CleanEx | HS_TDG | |
ExpressionAtlas | Q13569 | |
Genevestigator | Q13569 | |
GO | GO:0005654 GO:0005634 GO:0005886 GO:0016605 GO:0003684 GO:0019104 GO:0003690 GO:0030983 GO:0042803 GO:0008263 GO:0001104 GO:0043566 GO:0006284 GO:0006285 GO:0016568 GO:0045008 GO:0080111 GO:0006281 GO:0009790 GO:0006298 GO:0035562 GO:0032091 GO:0000122 GO:0040029 | |
Gene3D | 3.40.470.10 | |
InterPro | IPR015637 IPR003310 IPR005122 | |
PANTHER | PTHR12159 | |
Pfam | PF03167 | |
SMART | SM00986 | |
SUPFAM | SSF52141 | |
TIGRFAMs | TIGR00584 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0006284 |
base-excision repair |
ECO:0000314 |
P |
Figure 4 |
complete | |||||
enables |
GO:0031402 |
sodium ion binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0000287 |
magnesium ion binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0031404 |
chloride ion binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0030983 |
mismatched DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0008263 |
pyrimidine-specific mismatch base pair DNA N-glycosylase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003690 |
double-stranded DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0004844 |
uracil DNA N-glycosylase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006285 |
base-excision repair, AP site formation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0032183 |
SUMO binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0030983 |
mismatched DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0032183 |
SUMO binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0032183 |
SUMO binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0032183 |
SUMO binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:1902544 |
regulation of DNA N-glycosylase activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006285 |
base-excision repair, AP site formation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0008263 |
pyrimidine-specific mismatch base pair DNA N-glycosylase activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0043739 |
G/U mismatch-specific uracil-DNA glycosylase activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0043621 |
protein self-association |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0030983 |
mismatched DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003690 |
double-stranded DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0005524 |
ATP binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0030983 |
mismatched DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0080111 |
DNA demethylation |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0042803 |
protein homodimerization activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0040029 |
regulation of gene expression, epigenetic |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0030983 |
mismatched DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0019104 |
DNA N-glycosylase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0019104 |
DNA N-glycosylase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045995 |
regulation of embryonic development |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0008263 |
pyrimidine-specific mismatch base pair DNA N-glycosylase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0008263 |
pyrimidine-specific mismatch base pair DNA N-glycosylase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006298 |
mismatch repair |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006284 |
base-excision repair |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006284 |
base-excision repair |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003690 |
double-stranded DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0008263 |
pyrimidine-specific mismatch base pair DNA N-glycosylase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0026869 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006285 |
base-excision repair, AP site formation |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000255408 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:108247 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0004844 |
uracil DNA N-glycosylase activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000255408 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005886 |
plasma membrane |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0080111 |
DNA demethylation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P56581 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045995 |
regulation of embryonic development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P56581 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0040029 |
regulation of gene expression, epigenetic |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P56581 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0035562 |
negative regulation of chromatin binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P56581 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0032183 |
SUMO binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P56581 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0032091 |
negative regulation of protein binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P56581 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0019104 |
DNA N-glycosylase activity |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P56581 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0016605 |
PML body |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P56581 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006284 |
base-excision repair |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P56581 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P56581 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0005080 |
protein kinase C binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P56581 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003712 |
transcription coregulator activity |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P56581 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P56581 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000122 |
negative regulation of transcription by RNA polymerase II |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:P56581 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0019904 |
protein domain specific binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:A0A096MIY3 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0008134 |
transcription factor binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:A0A096MIY3 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:A0A096MIY3 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0000122 |
negative regulation of transcription by RNA polymerase II |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:A0A096MIY3 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0019104 |
DNA N-glycosylase activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006284 |
base-excision repair |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005654 |
nucleoplasm |
PMID:9489705[11] |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
enables |
GO:0003684 |
damaged DNA binding |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045008 |
depyrimidination |
Reactome:R-HSA-110329 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
P |
Seeded From UniProt |
complete | |
involved_in |
GO:0035511 |
oxidative DNA demethylation |
Reactome:R-HSA-5221061 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
P |
Seeded From UniProt |
complete | |
enables |
GO:0019104 |
DNA N-glycosylase activity |
Reactome:R-HSA-5221061 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
F |
Seeded From UniProt |
complete | |
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006325 |
chromatin organization |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Müller, U et al. (2014) TET-mediated oxidation of methylcytosine causes TDG or NEIL glycosylase dependent gene reactivation. Nucleic Acids Res. 42 8592-604 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 Baba, D et al. (2005) Crystal structure of thymine DNA glycosylase conjugated to SUMO-1. Nature 435 979-82 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 Hardeland, U et al. (2002) Modification of the human thymine-DNA glycosylase by ubiquitin-like proteins facilitates enzymatic turnover. EMBO J. 21 1456-64 PubMed GONUTS page
- ↑ 4.0 4.1 Baba, D et al. (2006) Crystal structure of SUMO-3-modified thymine-DNA glycosylase. J. Mol. Biol. 359 137-47 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 5.3 5.4 5.5 5.6 Smet-Nocca, C et al. (2008) The thymine-DNA glycosylase regulatory domain: residual structure and DNA binding. Biochemistry 47 6519-30 PubMed GONUTS page
- ↑ 6.0 6.1 6.2 6.3 Zhang, L et al. (2012) Thymine DNA glycosylase specifically recognizes 5-carboxylcytosine-modified DNA. Nat. Chem. Biol. 8 328-30 PubMed GONUTS page
- ↑ 7.0 7.1 7.2 Maiti, A et al. (2012) Lesion processing by a repair enzyme is severely curtailed by residues needed to prevent aberrant activity on undamaged DNA. Proc. Natl. Acad. Sci. U.S.A. 109 8091-6 PubMed GONUTS page
- ↑ 8.0 8.1 Maiti, A & Drohat, AC (2011) Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites. J. Biol. Chem. 286 35334-8 PubMed GONUTS page
- ↑ 9.0 9.1 Neddermann, P et al. (1996) Cloning and expression of human G/T mismatch-specific thymine-DNA glycosylase. J. Biol. Chem. 271 12767-74 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 10.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ 11.0 11.1 11.2 Barrett, TE et al. (1998) Crystal structure of a G:T/U mismatch-specific DNA glycosylase: mismatch recognition by complementary-strand interactions. Cell 92 117-29 PubMed GONUTS page
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