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HUMAN:TDG

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Species (Taxon ID) Homo sapiens (Human). (9606)
Gene Name(s) TDG
Protein Name(s) G/T mismatch-specific thymine DNA glycosylase

Thymine-DNA glycosylase hTDG

External Links
UniProt Q13569
EMBL U51166
AF545435
AC078819
BC037557
CCDS CCDS9095.1
RefSeq NP_003202.3
UniGene Hs.584809
PDB 1WYW
2D07
2RBA
3UFJ
3UO7
3UOB
4FNC
4JGC
PDBsum 1WYW
2D07
2RBA
3UFJ
3UO7
3UOB
4FNC
4JGC
DisProt DP00719
ProteinModelPortal Q13569
SMR Q13569
BioGrid 112855
DIP DIP-32709N
IntAct Q13569
MINT MINT-1182514
STRING 9606.ENSP00000376611
PhosphoSite Q13569
DMDM 46397791
MaxQB Q13569
PaxDb Q13569
PRIDE Q13569
Ensembl ENST00000392872
GeneID 6996
KEGG hsa:6996
UCSC uc001tkg.3
CTD 6996
GeneCards GC12P104359
H-InvDB HIX0026376
HGNC HGNC:11700
HPA HPA052263
MIM 601423
neXtProt NX_Q13569
PharmGKB PA36419
eggNOG COG3663
GeneTree ENSGT00390000000987
HOGENOM HOG000220820
HOVERGEN HBG003685
InParanoid Q13569
KO K03649
OMA NGQWMTQ
OrthoDB EOG790G1Z
PhylomeDB Q13569
TreeFam TF328764
Reactome REACT_1064
REACT_200682
REACT_702
ChiTaRS TDG
EvolutionaryTrace Q13569
GeneWiki Thymine-DNA_glycosylase
GenomeRNAi 6996
NextBio 27327
PRO PR:Q13569
Proteomes UP000005640
Bgee Q13569
CleanEx HS_TDG
ExpressionAtlas Q13569
Genevestigator Q13569
GO GO:0005654
GO:0005634
GO:0005886
GO:0016605
GO:0003684
GO:0019104
GO:0003690
GO:0030983
GO:0042803
GO:0008263
GO:0001104
GO:0043566
GO:0006284
GO:0006285
GO:0016568
GO:0045008
GO:0080111
GO:0006281
GO:0009790
GO:0006298
GO:0035562
GO:0032091
GO:0000122
GO:0040029
Gene3D 3.40.470.10
InterPro IPR015637
IPR003310
IPR005122
PANTHER PTHR12159
Pfam PF03167
SMART SM00986
SUPFAM SSF52141
TIGRFAMs TIGR00584

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0006284

base-excision repair

PMID:24948610[1]

ECO:0000314

P

Figure 4

complete
CACAO 10659

enables

GO:0031402

sodium ion binding

PMID:15959518[2]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0000287

magnesium ion binding

PMID:15959518[2]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0031404

chloride ion binding

PMID:15959518[2]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0030983

mismatched DNA binding

PMID:15959518[2]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0008263

pyrimidine-specific mismatch base pair DNA N-glycosylase activity

PMID:11889051[3]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003690

double-stranded DNA binding

PMID:11889051[3]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0004844

uracil DNA N-glycosylase activity

PMID:11889051[3]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0006285

base-excision repair, AP site formation

PMID:11889051[3]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0032183

SUMO binding

PMID:15959518[2]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P63165

F

Seeded From UniProt

complete

enables

GO:0030983

mismatched DNA binding

PMID:16626738[4]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0032183

SUMO binding

PMID:16626738[4]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P55854

F

Seeded From UniProt

complete

enables

GO:0032183

SUMO binding

PMID:11889051[3]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P55854

F

Seeded From UniProt

complete

enables

GO:0032183

SUMO binding

PMID:11889051[3]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P63165

F

Seeded From UniProt

complete

involved_in

GO:1902544

regulation of DNA N-glycosylase activity

PMID:18512959[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006285

base-excision repair, AP site formation

PMID:18512959[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0008263

pyrimidine-specific mismatch base pair DNA N-glycosylase activity

PMID:18512959[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0043739

G/U mismatch-specific uracil-DNA glycosylase activity

PMID:18512959[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0043621

protein self-association

PMID:18512959[5]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0030983

mismatched DNA binding

PMID:18512959[5]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003690

double-stranded DNA binding

PMID:18512959[5]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0005524

ATP binding

PMID:11889051[3]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:11889051[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0030983

mismatched DNA binding

PMID:11889051[3]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0080111

DNA demethylation

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P56581

P

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P56581

F

Seeded From UniProt

complete

enables

GO:0042803

protein homodimerization activity

PMID:22327402[6]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0040029

regulation of gene expression, epigenetic

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P56581

P

Seeded From UniProt

complete

enables

GO:0030983

mismatched DNA binding

PMID:22573813[7]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0019104

DNA N-glycosylase activity

PMID:21862836[8]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0019104

DNA N-glycosylase activity

PMID:22327402[6]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0045995

regulation of embryonic development

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P56581

P

Seeded From UniProt

complete

enables

GO:0008263

pyrimidine-specific mismatch base pair DNA N-glycosylase activity

PMID:8662714[9]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0008263

pyrimidine-specific mismatch base pair DNA N-glycosylase activity

PMID:22573813[7]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0006298

mismatch repair

PMID:22573813[7]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006284

base-excision repair

PMID:21862836[8]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006284

base-excision repair

PMID:22327402[6]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:8662714[9]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0003690

double-stranded DNA binding

PMID:22327402[6]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0008263

pyrimidine-specific mismatch base pair DNA N-glycosylase activity

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0026869
PANTHER:PTN000255408
UniProtKB:Q13569

F

Seeded From UniProt

complete

involved_in

GO:0006285

base-excision repair, AP site formation

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000255408
UniProtKB:Q13569

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:108247
PANTHER:PTN000952417
RGD:620959
UniProtKB:Q13569

C

Seeded From UniProt

complete

enables

GO:0004844

uracil DNA N-glycosylase activity

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000255408
PomBase:SPCC965.05c
UniProtKB:Q13569

F

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000052

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000052

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0080111

DNA demethylation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P56581
ensembl:ENSMUSP00000121000

P

Seeded From UniProt

complete

involved_in

GO:0045995

regulation of embryonic development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P56581
ensembl:ENSMUSP00000121000

P

Seeded From UniProt

complete

involved_in

GO:0040029

regulation of gene expression, epigenetic

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P56581
ensembl:ENSMUSP00000121000

P

Seeded From UniProt

complete

involved_in

GO:0035562

negative regulation of chromatin binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P56581
ensembl:ENSMUSP00000121000

P

Seeded From UniProt

complete

enables

GO:0032183

SUMO binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P56581
ensembl:ENSMUSP00000121000

F

Seeded From UniProt

complete

involved_in

GO:0032091

negative regulation of protein binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P56581
ensembl:ENSMUSP00000121000

P

Seeded From UniProt

complete

enables

GO:0019104

DNA N-glycosylase activity

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P56581
ensembl:ENSMUSP00000121000

F

Seeded From UniProt

complete

part_of

GO:0016605

PML body

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P56581
ensembl:ENSMUSP00000121000

C

Seeded From UniProt

complete

involved_in

GO:0006284

base-excision repair

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P56581
ensembl:ENSMUSP00000121000

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P56581
ensembl:ENSMUSP00000121000

C

Seeded From UniProt

complete

enables

GO:0005080

protein kinase C binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P56581
ensembl:ENSMUSP00000121000

F

Seeded From UniProt

complete

enables

GO:0003712

transcription coregulator activity

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P56581
ensembl:ENSMUSP00000121000

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P56581
ensembl:ENSMUSP00000121000

F

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:P56581
ensembl:ENSMUSP00000121000

P

Seeded From UniProt

complete

enables

GO:0019904

protein domain specific binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:A0A096MIY3
ensembl:ENSRNOP00000067921

F

Seeded From UniProt

complete

enables

GO:0008134

transcription factor binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:A0A096MIY3
ensembl:ENSRNOP00000067921

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:A0A096MIY3
ensembl:ENSRNOP00000067921

C

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:A0A096MIY3
ensembl:ENSRNOP00000067921

P

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR003310
InterPro:IPR015637

P

Seeded From UniProt

complete

enables

GO:0019104

DNA N-glycosylase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR003310
InterPro:IPR015637

F

Seeded From UniProt

complete

involved_in

GO:0006284

base-excision repair

PMID:9489705[11]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

PMID:9489705[11]
Reactome:R-HSA-5221061
Reactome:R-HSA-5220959
Reactome:R-HSA-4551738
Reactome:R-HSA-4551648
Reactome:R-HSA-110350
Reactome:R-HSA-110234
Reactome:R-HSA-110219
Reactome:R-HSA-110218
Reactome:R-HSA-110210
Reactome:R-HSA-110159
Reactome:R-HSA-110158

ECO:0000304

author statement supported by traceable reference used in manual assertion












C

Seeded From UniProt

complete

enables

GO:0003684

damaged DNA binding

PMID:9489705[11]

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0045008

depyrimidination

Reactome:R-HSA-110329
Reactome:R-HSA-110328

ECO:0000304

author statement supported by traceable reference used in manual assertion


P

Seeded From UniProt

complete

involved_in

GO:0035511

oxidative DNA demethylation

Reactome:R-HSA-5221061
Reactome:R-HSA-5220959

ECO:0000304

author statement supported by traceable reference used in manual assertion


P

Seeded From UniProt

complete

enables

GO:0019104

DNA N-glycosylase activity

Reactome:R-HSA-5221061
Reactome:R-HSA-5220959
Reactome:R-HSA-110234
Reactome:R-HSA-110219
Reactome:R-HSA-110218

ECO:0000304

author statement supported by traceable reference used in manual assertion





F

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0378

F

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0234

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

involved_in

GO:0006325

chromatin organization

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0156

P

Seeded From UniProt

complete

involved_in

GO:0006974

cellular response to DNA damage stimulus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0227

P

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Müller, U et al. (2014) TET-mediated oxidation of methylcytosine causes TDG or NEIL glycosylase dependent gene reactivation. Nucleic Acids Res. 42 8592-604 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 2.4 Baba, D et al. (2005) Crystal structure of thymine DNA glycosylase conjugated to SUMO-1. Nature 435 979-82 PubMed GONUTS page
  3. 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.8 Hardeland, U et al. (2002) Modification of the human thymine-DNA glycosylase by ubiquitin-like proteins facilitates enzymatic turnover. EMBO J. 21 1456-64 PubMed GONUTS page
  4. 4.0 4.1 Baba, D et al. (2006) Crystal structure of SUMO-3-modified thymine-DNA glycosylase. J. Mol. Biol. 359 137-47 PubMed GONUTS page
  5. 5.0 5.1 5.2 5.3 5.4 5.5 5.6 Smet-Nocca, C et al. (2008) The thymine-DNA glycosylase regulatory domain: residual structure and DNA binding. Biochemistry 47 6519-30 PubMed GONUTS page
  6. 6.0 6.1 6.2 6.3 Zhang, L et al. (2012) Thymine DNA glycosylase specifically recognizes 5-carboxylcytosine-modified DNA. Nat. Chem. Biol. 8 328-30 PubMed GONUTS page
  7. 7.0 7.1 7.2 Maiti, A et al. (2012) Lesion processing by a repair enzyme is severely curtailed by residues needed to prevent aberrant activity on undamaged DNA. Proc. Natl. Acad. Sci. U.S.A. 109 8091-6 PubMed GONUTS page
  8. 8.0 8.1 Maiti, A & Drohat, AC (2011) Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites. J. Biol. Chem. 286 35334-8 PubMed GONUTS page
  9. 9.0 9.1 Neddermann, P et al. (1996) Cloning and expression of human G/T mismatch-specific thymine-DNA glycosylase. J. Biol. Chem. 271 12767-74 PubMed GONUTS page
  10. 10.0 10.1 10.2 10.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  11. 11.0 11.1 11.2 Barrett, TE et al. (1998) Crystal structure of a G:T/U mismatch-specific DNA glycosylase: mismatch recognition by complementary-strand interactions. Cell 92 117-29 PubMed GONUTS page