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HUMAN:SDF1

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Species (Taxon ID) Homo sapiens (Human). (9606)
Gene Name(s) CXCL12 (synonyms: SDF1, SDF1A, SDF1B)
Protein Name(s) Stromal cell-derived factor 1

SDF-1 hSDF-1 C-X-C motif chemokine 12 Intercrine reduced in hepatomas IRH hIRH Pre-B cell growth-stimulating factor PBSF SDF-1-beta(3-72) SDF-1-alpha(3-67)

External Links
UniProt P48061
EMBL L36033
L36034
DQ345517
DQ345518
DQ345519
DQ345520
U16752
U19495
AY644456
AY874118
CR450283
AK292628
AK311814
AU120056
AY802782
AL137026
AL137026
CH471160
BC039893
CCDS CCDS31186.1
CCDS44373.1
CCDS53527.1
CCDS60518.1
CCDS7207.1
PIR G01540
RefSeq NP_000600.1
NP_001029058.1
NP_001171605.1
NP_001264919.1
NP_954637.1
UniGene Hs.522891
PDB 1A15
1QG7
1SDF
1VMC
2J7Z
2K01
2K03
2K04
2K05
2KEC
2KED
2KEE
2KOL
2NWG
2SDF
3GV3
3HP3
4LMQ
4UAI
PDBsum 1A15
1QG7
1SDF
1VMC
2J7Z
2K01
2K03
2K04
2K05
2KEC
2KED
2KEE
2KOL
2NWG
2SDF
3GV3
3HP3
4LMQ
4UAI
ProteinModelPortal P48061
SMR P48061
BioGrid 112288
DIP DIP-391N
DIP-5894N
DIP-5895N
IntAct P48061
MINT MINT-6491347
STRING 9606.ENSP00000363548
BindingDB P48061
DrugBank DB06822
PhosphoSite P48061
DMDM 1352728
PaxDb P48061
PRIDE P48061
Ensembl ENST00000343575
ENST00000374426
ENST00000374429
ENST00000395793
ENST00000395794
ENST00000395795
GeneID 6387
KEGG hsa:6387
UCSC uc001jbf.4
uc001jbh.3
uc021ppm.1
CTD 6387
GeneCards GC10M044865
H-InvDB HIX0008784
HGNC HGNC:10672
HPA CAB017564
MIM 600835
neXtProt NX_P48061
PharmGKB PA35602
eggNOG NOG26489
GeneTree ENSGT00390000014056
HOGENOM HOG000220915
HOVERGEN HBG107437
InParanoid P48061
KO K10031
OMA HVARANI
OrthoDB EOG7C5MBS
PhylomeDB P48061
TreeFam TF353159
Reactome REACT_116022
REACT_15344
REACT_19231
ChiTaRS CXCL12
EvolutionaryTrace P48061
GeneWiki Stromal_cell-derived_factor-1
GenomeRNAi 6387
NextBio 24808
PMAP-CutDB Q5IT36
PRO PR:P48061
Proteomes UP000005640
Bgee P48061
CleanEx HS_CXCL12
Genevestigator P48061
GO GO:0009897
GO:0005576
GO:0005615
GO:0070062
GO:0008009
GO:0042379
GO:0045236
GO:0005102
GO:0008344
GO:0001667
GO:0008015
GO:0007155
GO:0060326
GO:0006874
GO:0070098
GO:0006935
GO:0007186
GO:0007281
GO:0008354
GO:0006955
GO:0050930
GO:0008045
GO:1902230
GO:2000107
GO:1903237
GO:0001764
GO:0031100
GO:0001569
GO:0048842
GO:0090280
GO:0045785
GO:0033603
GO:0001938
GO:0090026
GO:2000406
GO:0008064
GO:0009408
GO:0001666
GO:0009612
GO:0043434
GO:0009314
GO:0009615
GO:0007165
GO:0042098
GO:0022029
InterPro IPR001811
Pfam PF00048
SMART SM00199
SUPFAM SSF54117

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0008283

cell proliferation

PMID:2684108[1]

ECO:0000314

P

Figure 3 shows that the different concentration of CXCL12 effect the overall proliferation of the cell.

complete
CACAO 5626

GO:0042148

strand invasion

PMID:2684108[1]

ECO:0000314

P

Figure 6 shows that from the data collected, CXCL12 invades tumor cells and will cause the formation of CXCL8 products.

complete
CACAO 5629

involved_in

GO:0038146

chemokine (C-X-C motif) ligand 12 signaling pathway

PMID:27400149[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0008009

chemokine activity

PMID:27400149[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

occurs_in:(CL:0000084)

Seeded From UniProt

complete

part_of

GO:0062023

collagen-containing extracellular matrix

PMID:25037231[3]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(UBERON:0002107)

Seeded From UniProt

complete

part_of

GO:0062023

collagen-containing extracellular matrix

PMID:25037231[3]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

part_of:(UBERON:0001155)

Seeded From UniProt

complete

involved_in

GO:0033622

integrin activation

PMID:29301984[4]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0005178

integrin binding

PMID:29301984[4]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:1990869

cellular response to chemokine

PMID:27400149[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0060326

cell chemotaxis

PMID:18308860[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0008009

chemokine activity

PMID:18308860[5]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:1903237

negative regulation of leukocyte tethering or rolling

PMID:18308860[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0070062

extracellular exosome

PMID:23533145[6]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:2000669

negative regulation of dendritic cell apoptotic process

PMID:15059845[7]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:1902230

negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage

PMID:20388803[8]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0070098

chemokine-mediated signaling pathway

PMID:20388803[8]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0045236

CXCR chemokine receptor binding

PMID:20388803[8]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0090026

positive regulation of monocyte chemotaxis

PMID:18802065[9]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0042379

chemokine receptor binding

PMID:22457824[10]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0070098

chemokine-mediated signaling pathway

PMID:21873635[11]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000428507
UniProtKB:P48061

P

Seeded From UniProt

complete

involved_in

GO:0060326

cell chemotaxis

PMID:21873635[11]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000428507
UniProtKB:P48061

P

Seeded From UniProt

complete

involved_in

GO:0050930

induction of positive chemotaxis

PMID:21873635[11]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:103556
PANTHER:PTN000428507

P

Seeded From UniProt

complete

enables

GO:0045236

CXCR chemokine receptor binding

PMID:21873635[11]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000428507
UniProtKB:P48061

F

Seeded From UniProt

complete

involved_in

GO:0030335

positive regulation of cell migration

PMID:21873635[11]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:103556
PANTHER:PTN000428507
RGD:3651
UniProtKB:A0A1D5P4F0

P

Seeded From UniProt

complete

part_of

GO:0009897

external side of plasma membrane

PMID:21873635[11]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:103556
PANTHER:PTN000428507

C

Seeded From UniProt

complete

enables

GO:0008009

chemokine activity

PMID:21873635[11]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:103556
PANTHER:PTN000428507
UniProtKB:A0A1D5P4F0
UniProtKB:P48061

F

Seeded From UniProt

complete

involved_in

GO:2000406

positive regulation of T cell migration

PMID:23620790[12]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045785

positive regulation of cell adhesion

PMID:23620790[12]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010469

regulation of signaling receptor activity

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0005125

P

Seeded From UniProt

complete

involved_in

GO:0010469

regulation of signaling receptor activity

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0008083

P

Seeded From UniProt

complete

involved_in

GO:1990478

response to ultrasound

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

involved_in

GO:0051924

regulation of calcium ion transport

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

involved_in

GO:0050966

detection of mechanical stimulus involved in sensory perception of pain

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

involved_in

GO:0050965

detection of temperature stimulus involved in sensory perception of pain

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

involved_in

GO:0048842

positive regulation of axon extension involved in axon guidance

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

involved_in

GO:0045666

positive regulation of neuron differentiation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

involved_in

GO:0043434

response to peptide hormone

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

involved_in

GO:0033603

positive regulation of dopamine secretion

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

involved_in

GO:0031100

animal organ regeneration

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

involved_in

GO:0030335

positive regulation of cell migration

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

involved_in

GO:0022029

telencephalon cell migration

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

involved_in

GO:0009612

response to mechanical stimulus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

involved_in

GO:0009408

response to heat

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

involved_in

GO:0009314

response to radiation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

involved_in

GO:0008344

adult locomotory behavior

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

involved_in

GO:0008284

positive regulation of cell population proliferation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

involved_in

GO:0007420

brain development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

C

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

C

Seeded From UniProt

complete

part_of

GO:0005615

extracellular space

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

C

Seeded From UniProt

complete

involved_in

GO:0001938

positive regulation of endothelial cell proliferation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

involved_in

GO:0001764

neuron migration

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

involved_in

GO:0001666

response to hypoxia

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q80YV8
ensembl:ENSRNOP00000059574

P

Seeded From UniProt

complete

part_of

GO:0005576

extracellular region

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001811
InterPro:IPR036048

C

Seeded From UniProt

complete

involved_in

GO:0006935

chemotaxis

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR033899

P

Seeded From UniProt

complete

involved_in

GO:0006952

defense response

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR033899

P

Seeded From UniProt

complete

involved_in

GO:0006955

immune response

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001811
InterPro:IPR036048

P

Seeded From UniProt

complete

enables

GO:0008009

chemokine activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR001811
InterPro:IPR033899
InterPro:IPR036048
InterPro:IPR039813

F

Seeded From UniProt

complete

involved_in

GO:0070098

chemokine-mediated signaling pathway

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR039813

P

Seeded From UniProt

complete

involved_in

GO:0061844

antimicrobial humoral immune response mediated by antimicrobial peptide

PMID:12949249[13]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0031640

killing of cells of other organism

PMID:12949249[13]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0031640

killing of cells of other organism

PMID:12949249[13]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010818

T cell chemotaxis

PMID:17088326[14]

ECO:0000314

direct assay evidence used in manual assertion

P

  • results_in_movement_of:(CL:0000492)
  • part_of:(CL:2000001)

Seeded From UniProt

complete

involved_in

GO:0090280

positive regulation of calcium ion import

PMID:10925302[15]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0009615

response to virus

PMID:10772939[16]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0008064

regulation of actin polymerization or depolymerization

PMID:10570282[17]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0008015

blood circulation

PMID:10772939[16]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0008009

chemokine activity

PMID:10772939[16]
PMID:12782716[18]

ECO:0000304

author statement supported by traceable reference used in manual assertion


F

Seeded From UniProt

complete

involved_in

GO:0007186

G protein-coupled receptor signaling pathway

PMID:8752280[19]
Reactome:R-HSA-388396

ECO:0000304

author statement supported by traceable reference used in manual assertion


P

Seeded From UniProt

complete

involved_in

GO:0007165

signal transduction

PMID:10491003[20]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007155

cell adhesion

PMID:10198043[21]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006955

immune response

PMID:10802710[22]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006935

chemotaxis

PMID:10620615[23]
PMID:12782716[18]

ECO:0000304

author statement supported by traceable reference used in manual assertion


P

Seeded From UniProt

complete

involved_in

GO:0006874

cellular calcium ion homeostasis

PMID:10772939[16]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0005102

signaling receptor binding

PMID:10438529[24]
PMID:10358157[25]

ECO:0000304

author statement supported by traceable reference used in manual assertion


F

Seeded From UniProt

complete

involved_in

GO:0007411

axon guidance

Reactome:R-HSA-422475

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005576

extracellular region

Reactome:R-HSA-8986258
Reactome:R-HSA-8954199
Reactome:R-HSA-749456
Reactome:R-HSA-749454
Reactome:R-HSA-380073
Reactome:R-HSA-374214

ECO:0000304

author statement supported by traceable reference used in manual assertion






C

Seeded From UniProt

complete

enables

GO:0008083

growth factor activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0339

F

Seeded From UniProt

complete

enables

GO:0005125

cytokine activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0202

F

Seeded From UniProt

complete

involved_in

GO:0016032

viral process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0945

P

Seeded From UniProt

complete

involved_in

GO:0006935

chemotaxis

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0145

P

Seeded From UniProt

complete

part_of

GO:0005576

extracellular region

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0964
UniProtKB-SubCell:SL-0243

C

Seeded From UniProt

complete

part_of

GO:0005615

extracellular space

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0202

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 Van Huynh, T et al. (1989) Reduced protein kinase C immunoreactivity and altered protein phosphorylation in Alzheimer's disease fibroblasts. Arch. Neurol. 46 1195-9 PubMed GONUTS page
  2. 2.0 2.1 2.2 Köchl, R et al. (2016) WNK1 kinase balances T cell adhesion versus migration in vivo. Nat. Immunol. 17 1075-83 PubMed GONUTS page
  3. 3.0 3.1 Naba, A et al. (2014) Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver. BMC Cancer 14 518 PubMed GONUTS page
  4. 4.0 4.1 Fujita, M et al. (2018) Stromal cell-derived factor-1 (CXCL12) activates integrins by direct binding to an allosteric ligand-binding site (site 2) of integrins without CXCR4. Biochem. J. 475 723-732 PubMed GONUTS page
  5. 5.0 5.1 5.2 Miles, A et al. (2008) CCL25 and CCL28 promote alpha4 beta7-integrin-dependent adhesion of lymphocytes to MAdCAM-1 under shear flow. Am. J. Physiol. Gastrointest. Liver Physiol. 294 G1257-67 PubMed GONUTS page
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