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HUMAN:JMJD6
Contents
Species (Taxon ID) | Homo sapiens (Human). (9606) | |
Gene Name(s) | JMJD6 (synonyms: KIAA0585, PTDSR) | |
Protein Name(s) | Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6
Histone arginine demethylase JMJD6 JmjC domain-containing protein 6 Jumonji domain-containing protein 6 Lysyl-hydroxylase JMJD6 Peptide-lysine 5-dioxygenase JMJD6 Phosphatidylserine receptor Protein PTDSR | |
External Links | ||
UniProt | Q6NYC1 | |
EMBL | AB073711 AB011157 AK021780 AK294816 AC005837 CH471099 BC047003 BC066654 | |
CCDS | CCDS42383.1 CCDS42384.1 | |
RefSeq | NP_001074930.1 NP_055982.2 | |
UniGene | Hs.514505 | |
PDB | 3K2O 3LD8 3LDB | |
PDBsum | 3K2O 3LD8 3LDB | |
ProteinModelPortal | Q6NYC1 | |
SMR | Q6NYC1 | |
BioGrid | 116817 | |
DIP | DIP-60686N | |
IntAct | Q6NYC1 | |
MINT | MINT-3086431 | |
STRING | 9606.ENSP00000394085 | |
PhosphoSite | Q6NYC1 | |
DMDM | 67461014 | |
MaxQB | Q6NYC1 | |
PaxDb | Q6NYC1 | |
PRIDE | Q6NYC1 | |
Ensembl | ENST00000397625 ENST00000445478 | |
GeneID | 23210 | |
KEGG | hsa:23210 | |
UCSC | uc002jsn.1 uc002jso.3 | |
CTD | 23210 | |
GeneCards | GC17M074708 | |
HGNC | HGNC:19355 | |
HPA | CAB004548 | |
MIM | 604914 | |
neXtProt | NX_Q6NYC1 | |
PharmGKB | PA162392513 | |
eggNOG | NOG124833 | |
GeneTree | ENSGT00530000063579 | |
HOGENOM | HOG000265824 | |
HOVERGEN | HBG054774 | |
InParanoid | Q6NYC1 | |
KO | K11323 | |
PhylomeDB | Q6NYC1 | |
TreeFam | TF314988 | |
EvolutionaryTrace | Q6NYC1 | |
GeneWiki | JMJD6 | |
GenomeRNAi | 23210 | |
NextBio | 44753 | |
PRO | PR:Q6NYC1 | |
Proteomes | UP000005640 | |
Bgee | Q6NYC1 | |
CleanEx | HS_JMJD6 | |
ExpressionAtlas | Q6NYC1 | |
Genevestigator | Q6NYC1 | |
GO | GO:0005730 GO:0005654 GO:0005634 GO:0005886 GO:0033746 GO:0033749 GO:0042802 GO:0005506 GO:0070815 GO:0004872 GO:0003723 GO:0003727 GO:0007166 GO:0048821 GO:0007507 GO:0070078 GO:0070079 GO:0001822 GO:0030324 GO:0042116 GO:0006397 GO:0018395 GO:0043654 GO:0048024 GO:0006355 GO:0060041 GO:0008380 GO:0002040 GO:0033077 GO:0006351 | |
InterPro | IPR003347 | |
Pfam | PF02373 | |
SMART | SM00558 | |
PROSITE | PS51184 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0070815 |
peptidyl-lysine 5-dioxygenase activity |
ECO:0000314 |
F |
Figure 2 shows the hydroxylase activity on the tumor suppressor p53 at lysine 382 |
complete | |||||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006482 |
protein demethylation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0070079 |
histone H4-R3 demethylation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0032451 |
demethylase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0032452 |
histone demethylase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0106140 |
P-TEFb complex binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0033749 |
histone demethylase activity (H4-R3 specific) |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003713 |
transcription coactivator activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
has_direct_input:(UniProtKB:O60885) |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045893 |
positive regulation of transcription, DNA-templated |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
has_regulation_target:(UniProtKB:Q9P1W9)|has_regulation_target:(UniProtKB:P24385)|has_regulation_target:(UniProtKB:Q96C86) |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0035513 |
oxidative RNA demethylation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0035515 |
oxidative RNA demethylase activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0070079 |
histone H4-R3 demethylation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003727 |
single-stranded RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051260 |
protein homooligomerization |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
NOT|involved_in |
GO:0070078 |
histone H3-R2 demethylation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
NOT|involved_in |
GO:0070079 |
histone H4-R3 demethylation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051260 |
protein homooligomerization |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0070815 |
peptidyl-lysine 5-dioxygenase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0018395 |
peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0070079 |
histone H4-R3 demethylation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0070078 |
histone H3-R2 demethylation |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0070815 |
peptidyl-lysine 5-dioxygenase activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0048024 |
regulation of mRNA splicing, via spliceosome |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0033749 |
histone demethylase activity (H4-R3 specific) |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0033746 |
histone demethylase activity (H3-R2 specific) |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0018395 |
peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005730 |
nucleolus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0005506 |
iron ion binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003727 |
single-stranded RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0002040 |
sprouting angiogenesis |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:1990904 |
ribonucleoprotein complex |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0060041 |
retina development in camera-type eye |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0048821 |
erythrocyte development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0048024 |
regulation of mRNA splicing, via spliceosome |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0043654 |
recognition of apoptotic cell |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0043277 |
apoptotic cell clearance |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0042803 |
protein homodimerization activity |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0042802 |
identical protein binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0042116 |
macrophage activation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0038023 |
signaling receptor activity |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0033077 |
T cell differentiation in thymus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0030324 |
lung development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007507 |
heart development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007166 |
cell surface receptor signaling pathway |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005886 |
plasma membrane |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005829 |
cytosol |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
C |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003723 |
RNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0002040 |
sprouting angiogenesis |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0001822 |
kidney development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0001568 |
blood vessel development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q9ERI5 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0003723 |
RNA binding |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0032452 |
histone demethylase activity |
Reactome:R-HSA-5661125 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
F |
Seeded From UniProt |
complete | |
part_of |
GO:0005654 |
nucleoplasm |
Reactome:R-HSA-5661125 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
involved_in |
GO:0030154 |
cell differentiation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006325 |
chromatin organization |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0016491 |
oxidoreductase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006397 |
mRNA processing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0055114 |
oxidation-reduction process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0051213 |
dioxygenase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003723 |
RNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0008380 |
RNA splicing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007275 |
multicellular organism development |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005730 |
nucleolus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Wang, F et al. (2014) JMJD6 promotes colon carcinogenesis through negative regulation of p53 by hydroxylation. PLoS Biol. 12 e1001819 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 2.4 Poulard, C et al. (2014) JMJD6 regulates ERα methylation on arginine. PLoS ONE 9 e87982 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 Liu, W et al. (2013) Brd4 and JMJD6-associated anti-pause enhancers in regulation of transcriptional pause release. Cell 155 1581-95 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 Rahman, S et al. (2011) The Brd4 extraterminal domain confers transcription activation independent of pTEFb by recruiting multiple proteins, including NSD3. Mol. Cell. Biol. 31 2641-52 PubMed GONUTS page
- ↑ Konuma, T et al. (2017) Structural Mechanism of the Oxygenase JMJD6 Recognition by the Extraterminal (ET) Domain of BRD4. Sci Rep 7 16272 PubMed GONUTS page
- ↑ 6.0 6.1 6.2 6.3 6.4 Han, G et al. (2012) The hydroxylation activity of Jmjd6 is required for its homo-oligomerization. J. Cell. Biochem. 113 1663-70 PubMed GONUTS page
- ↑ 7.0 7.1 7.2 7.3 Chang, B et al. (2007) JMJD6 is a histone arginine demethylase. Science 318 444-7 PubMed GONUTS page
- ↑ 8.0 8.1 Tibrewal, N et al. (2007) Characterization of the biochemical and biophysical properties of the phosphatidylserine receptor (PS-R) gene product. Mol. Cell. Biochem. 304 119-25 PubMed GONUTS page
- ↑ 9.0 9.1 9.2 Webby, CJ et al. (2009) Jmjd6 catalyses lysyl-hydroxylation of U2AF65, a protein associated with RNA splicing. Science 325 90-3 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 Hahn, P et al. (2010) Analysis of Jmjd6 cellular localization and testing for its involvement in histone demethylation. PLoS ONE 5 e13769 PubMed GONUTS page
- ↑ Cui, P et al. (2004) Nuclear localization of the phosphatidylserine receptor protein via multiple nuclear localization signals. Exp. Cell Res. 293 154-63 PubMed GONUTS page
- ↑ 12.0 12.1 Hong, X et al. (2010) Interaction of JMJD6 with single-stranded RNA. Proc. Natl. Acad. Sci. U.S.A. 107 14568-72 PubMed GONUTS page
c
h
m
o
p
- GO:0106140 ! P-TEFb complex binding
- GO:0070815 ! peptidyl-lysine 5-dioxygenase activity
- GO:0018395 ! peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine
- GO:0005886 ! plasma membrane
- GO:0045944 ! positive regulation of transcription by RNA polymerase II
- GO:0045893 ! positive regulation of DNA-templated transcription
- Primates
- GO:0006482 ! protein demethylation
- GO:0051260 ! protein homooligomerization
- GO:0042803 ! protein homodimerization activity
r
s