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HUMAN:JMJD6

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Species (Taxon ID) Homo sapiens (Human). (9606)
Gene Name(s) JMJD6 (synonyms: KIAA0585, PTDSR)
Protein Name(s) Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6

Histone arginine demethylase JMJD6 JmjC domain-containing protein 6 Jumonji domain-containing protein 6 Lysyl-hydroxylase JMJD6 Peptide-lysine 5-dioxygenase JMJD6 Phosphatidylserine receptor Protein PTDSR

External Links
UniProt Q6NYC1
EMBL AB073711
AB011157
AK021780
AK294816
AC005837
CH471099
BC047003
BC066654
CCDS CCDS42383.1
CCDS42384.1
RefSeq NP_001074930.1
NP_055982.2
UniGene Hs.514505
PDB 3K2O
3LD8
3LDB
PDBsum 3K2O
3LD8
3LDB
ProteinModelPortal Q6NYC1
SMR Q6NYC1
BioGrid 116817
DIP DIP-60686N
IntAct Q6NYC1
MINT MINT-3086431
STRING 9606.ENSP00000394085
PhosphoSite Q6NYC1
DMDM 67461014
MaxQB Q6NYC1
PaxDb Q6NYC1
PRIDE Q6NYC1
Ensembl ENST00000397625
ENST00000445478
GeneID 23210
KEGG hsa:23210
UCSC uc002jsn.1
uc002jso.3
CTD 23210
GeneCards GC17M074708
HGNC HGNC:19355
HPA CAB004548
MIM 604914
neXtProt NX_Q6NYC1
PharmGKB PA162392513
eggNOG NOG124833
GeneTree ENSGT00530000063579
HOGENOM HOG000265824
HOVERGEN HBG054774
InParanoid Q6NYC1
KO K11323
PhylomeDB Q6NYC1
TreeFam TF314988
EvolutionaryTrace Q6NYC1
GeneWiki JMJD6
GenomeRNAi 23210
NextBio 44753
PRO PR:Q6NYC1
Proteomes UP000005640
Bgee Q6NYC1
CleanEx HS_JMJD6
ExpressionAtlas Q6NYC1
Genevestigator Q6NYC1
GO GO:0005730
GO:0005654
GO:0005634
GO:0005886
GO:0033746
GO:0033749
GO:0042802
GO:0005506
GO:0070815
GO:0004872
GO:0003723
GO:0003727
GO:0007166
GO:0048821
GO:0007507
GO:0070078
GO:0070079
GO:0001822
GO:0030324
GO:0042116
GO:0006397
GO:0018395
GO:0043654
GO:0048024
GO:0006355
GO:0060041
GO:0008380
GO:0002040
GO:0033077
GO:0006351
InterPro IPR003347
Pfam PF02373
SMART SM00558
PROSITE PS51184

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0070815

peptidyl-lysine 5-dioxygenase activity

PMID:24667498[1]

ECO:0000314

F

Figure 2 shows the hydroxylase activity on the tumor suppressor p53 at lysine 382

complete
CACAO 10076

part_of

GO:0005737

cytoplasm

PMID:24498420[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0006482

protein demethylation

PMID:24498420[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0070079

histone H4-R3 demethylation

PMID:24498420[2]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0032451

demethylase activity

PMID:24498420[2]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0032452

histone demethylase activity

PMID:24498420[2]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0106140

P-TEFb complex binding

PMID:24360279[3]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0033749

histone demethylase activity (H4-R3 specific)

PMID:24360279[3]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003713

transcription coactivator activity

PMID:21555454[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

has_direct_input:(UniProtKB:O60885)

Seeded From UniProt

complete

involved_in

GO:0045893

positive regulation of transcription, DNA-templated

PMID:21555454[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

has_regulation_target:(UniProtKB:Q9P1W9)|has_regulation_target:(UniProtKB:P24385)|has_regulation_target:(UniProtKB:Q96C86)

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21555454[4]

ECO:0000315

mutant phenotype evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0035513

oxidative RNA demethylation

PMID:24360279[3]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0035515

oxidative RNA demethylase activity

PMID:24360279[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0070079

histone H4-R3 demethylation

PMID:24360279[3]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:24360279[3]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0003727

single-stranded RNA binding

PMID:29176719[5]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0051260

protein homooligomerization

PMID:24360279[3]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

NOT|involved_in

GO:0070078

histone H3-R2 demethylation

PMID:22189873[6]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

NOT|involved_in

GO:0070079

histone H4-R3 demethylation

PMID:22189873[6]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0051260

protein homooligomerization

PMID:22189873[6]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0070815

peptidyl-lysine 5-dioxygenase activity

PMID:22189873[6]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0018395

peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine

PMID:22189873[6]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0070079

histone H4-R3 demethylation

PMID:17947579[7]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0070078

histone H3-R2 demethylation

PMID:17947579[7]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:17534701[8]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:17534701[8]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0070815

peptidyl-lysine 5-dioxygenase activity

PMID:19574390[9]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0048024

regulation of mRNA splicing, via spliceosome

PMID:19574390[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0033749

histone demethylase activity (H4-R3 specific)

PMID:17947579[7]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0033746

histone demethylase activity (H3-R2 specific)

PMID:17947579[7]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0018395

peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine

PMID:19574390[9]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005730

nucleolus

PMID:21060799[10]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

PMID:21060799[10]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:14729065[11]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0005506

iron ion binding

PMID:20679243[12]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003727

single-stranded RNA binding

PMID:20679243[12]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0002040

sprouting angiogenesis

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:Q9ERI5

P

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

PMID:24360279[3]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q6NYC1

F

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000052

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:1990904

ribonucleoprotein complex

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

C

Seeded From UniProt

complete

involved_in

GO:0060041

retina development in camera-type eye

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

P

Seeded From UniProt

complete

involved_in

GO:0048821

erythrocyte development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

P

Seeded From UniProt

complete

involved_in

GO:0048024

regulation of mRNA splicing, via spliceosome

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

P

Seeded From UniProt

complete

involved_in

GO:0043654

recognition of apoptotic cell

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

P

Seeded From UniProt

complete

involved_in

GO:0043277

apoptotic cell clearance

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

P

Seeded From UniProt

complete

enables

GO:0042803

protein homodimerization activity

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

F

Seeded From UniProt

complete

enables

GO:0042802

identical protein binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

F

Seeded From UniProt

complete

involved_in

GO:0042116

macrophage activation

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

P

Seeded From UniProt

complete

enables

GO:0038023

signaling receptor activity

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

F

Seeded From UniProt

complete

involved_in

GO:0033077

T cell differentiation in thymus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

P

Seeded From UniProt

complete

involved_in

GO:0030324

lung development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

P

Seeded From UniProt

complete

involved_in

GO:0007507

heart development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

P

Seeded From UniProt

complete

involved_in

GO:0007166

cell surface receptor signaling pathway

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

P

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

C

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

C

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

F

Seeded From UniProt

complete

involved_in

GO:0002040

sprouting angiogenesis

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

P

Seeded From UniProt

complete

involved_in

GO:0001822

kidney development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

P

Seeded From UniProt

complete

involved_in

GO:0001568

blood vessel development

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q9ERI5
ensembl:ENSMUSP00000047570

P

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

PMID:21060799[10]

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0032452

histone demethylase activity

Reactome:R-HSA-5661125
Reactome:R-HSA-5661124
Reactome:R-HSA-5661122
Reactome:R-HSA-4754176

ECO:0000304

author statement supported by traceable reference used in manual assertion




F

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

Reactome:R-HSA-5661125
Reactome:R-HSA-5661124
Reactome:R-HSA-5661122
Reactome:R-HSA-4754176

ECO:0000304

author statement supported by traceable reference used in manual assertion




C

Seeded From UniProt

complete

involved_in

GO:0030154

cell differentiation

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0221

P

Seeded From UniProt

complete

involved_in

GO:0006325

chromatin organization

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0156

P

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

enables

GO:0016491

oxidoreductase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0560

F

Seeded From UniProt

complete

involved_in

GO:0006397

mRNA processing

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0507

P

Seeded From UniProt

complete

involved_in

GO:0055114

oxidation-reduction process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0560

P

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

enables

GO:0051213

dioxygenase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0223

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539

C

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0694

F

Seeded From UniProt

complete

involved_in

GO:0008380

RNA splicing

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0508

P

Seeded From UniProt

complete

involved_in

GO:0007275

multicellular organism development

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0217

P

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0190

C

Seeded From UniProt

complete

part_of

GO:0005730

nucleolus

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0188

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Wang, F et al. (2014) JMJD6 promotes colon carcinogenesis through negative regulation of p53 by hydroxylation. PLoS Biol. 12 e1001819 PubMed GONUTS page
  2. 2.0 2.1 2.2 2.3 2.4 Poulard, C et al. (2014) JMJD6 regulates ERα methylation on arginine. PLoS ONE 9 e87982 PubMed GONUTS page
  3. 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 Liu, W et al. (2013) Brd4 and JMJD6-associated anti-pause enhancers in regulation of transcriptional pause release. Cell 155 1581-95 PubMed GONUTS page
  4. 4.0 4.1 4.2 Rahman, S et al. (2011) The Brd4 extraterminal domain confers transcription activation independent of pTEFb by recruiting multiple proteins, including NSD3. Mol. Cell. Biol. 31 2641-52 PubMed GONUTS page
  5. Konuma, T et al. (2017) Structural Mechanism of the Oxygenase JMJD6 Recognition by the Extraterminal (ET) Domain of BRD4. Sci Rep 7 16272 PubMed GONUTS page
  6. 6.0 6.1 6.2 6.3 6.4 Han, G et al. (2012) The hydroxylation activity of Jmjd6 is required for its homo-oligomerization. J. Cell. Biochem. 113 1663-70 PubMed GONUTS page
  7. 7.0 7.1 7.2 7.3 Chang, B et al. (2007) JMJD6 is a histone arginine demethylase. Science 318 444-7 PubMed GONUTS page
  8. 8.0 8.1 Tibrewal, N et al. (2007) Characterization of the biochemical and biophysical properties of the phosphatidylserine receptor (PS-R) gene product. Mol. Cell. Biochem. 304 119-25 PubMed GONUTS page
  9. 9.0 9.1 9.2 Webby, CJ et al. (2009) Jmjd6 catalyses lysyl-hydroxylation of U2AF65, a protein associated with RNA splicing. Science 325 90-3 PubMed GONUTS page
  10. 10.0 10.1 10.2 Hahn, P et al. (2010) Analysis of Jmjd6 cellular localization and testing for its involvement in histone demethylation. PLoS ONE 5 e13769 PubMed GONUTS page
  11. Cui, P et al. (2004) Nuclear localization of the phosphatidylserine receptor protein via multiple nuclear localization signals. Exp. Cell Res. 293 154-63 PubMed GONUTS page
  12. 12.0 12.1 Hong, X et al. (2010) Interaction of JMJD6 with single-stranded RNA. Proc. Natl. Acad. Sci. U.S.A. 107 14568-72 PubMed GONUTS page