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HUMAN:HNRPU
Contents
Species (Taxon ID) | Homo sapiens (Human). (9606) | |
Gene Name(s) | HNRNPU (synonyms: HNRPU, SAFA, U21.1) | |
Protein Name(s) | Heterogeneous nuclear ribonucleoprotein U
hnRNP U Scaffold attachment factor A SAF-A p120 pp120 | |
External Links | ||
UniProt | Q00839 | |
EMBL | X65488 AF068846 BX323046 BC003367 BC003621 BC007950 BC024767 BC034925 | |
CCDS | CCDS31081.1 CCDS41479.1 | |
PIR | S22765 | |
RefSeq | NP_004492.2 NP_114032.2 XP_016856604.1 XP_016856605.1 XP_016856606.1 | |
UniGene | Hs.106212 Hs.411490 Hs.743421 | |
PDB | 1ZRJ | |
PDBsum | 1ZRJ | |
ProteinModelPortal | Q00839 | |
SMR | Q00839 | |
BioGrid | 109433 | |
DIP | DIP-684N | |
IntAct | Q00839 | |
MINT | MINT-1654412 | |
STRING | 9606.ENSP00000283179 | |
iPTMnet | Q00839 | |
PhosphoSitePlus | Q00839 | |
SwissPalm | Q00839 | |
BioMuta | HNRNPU | |
DMDM | 254763463 | |
EPD | Q00839 | |
MaxQB | Q00839 | |
PaxDb | Q00839 | |
PeptideAtlas | Q00839 | |
PRIDE | Q00839 | |
DNASU | 3192 | |
Ensembl | ENST00000283179 ENST00000444376 | |
GeneID | 3192 | |
KEGG | hsa:3192 | |
UCSC | uc001iaz.2 | |
CTD | 3192 | |
DisGeNET | 3192 | |
GeneCards | HNRNPU | |
HGNC | HGNC:5048 | |
HPA | CAB011532 HPA041057 HPA058707 | |
MIM | 602869 | |
neXtProt | NX_Q00839 | |
OpenTargets | ENSG00000153187 | |
PharmGKB | PA162391486 | |
eggNOG | ENOG410IR1W ENOG410Y1WQ | |
GeneTree | ENSGT00390000020210 | |
HOGENOM | HOG000253920 | |
HOVERGEN | HBG061101 | |
InParanoid | Q00839 | |
KO | K12888 | |
OMA | RQMADTG | |
OrthoDB | EOG091G041T | |
PhylomeDB | Q00839 | |
TreeFam | TF317301 | |
Reactome | [www.reactome.org/content/detail/R-HSA-72163 R-HSA-72163] [www.reactome.org/content/detail/R-HSA-72203 R-HSA-72203] | |
SIGNOR | Q00839 | |
ChiTaRS | HNRNPU | |
EvolutionaryTrace | Q00839 | |
GeneWiki | HNRPU | |
GenomeRNAi | 3192 | |
PRO | PR:Q00839 | |
Proteomes | UP000005640 | |
Bgee | ENSG00000153187 | |
CleanEx | HS_HNRNPU | |
ExpressionAtlas | Q00839 | |
Genevisible | Q00839 | |
GO | GO:0071013 GO:0009986 GO:0070937 GO:0036464 GO:0031012 GO:0030529 GO:0016020 GO:0005654 GO:0005634 GO:0005524 GO:0001047 GO:0003677 GO:0035326 GO:0034046 GO:0043021 GO:0003723 GO:0070034 GO:0055013 GO:0071549 GO:0032922 GO:0070934 GO:0010467 GO:0000398 GO:0032211 GO:0001649 GO:2000373 GO:0010628 GO:0006396 | |
Gene3D | 1.10.720.30 3.40.50.300 | |
InterPro | IPR001870 IPR013320 IPR026745 IPR027417 IPR003034 IPR003877 | |
PANTHER | PTHR12381:SF63 | |
Pfam | PF02037 PF00622 | |
SMART | SM00513 SM00449 | |
SUPFAM | SSF49899 SSF52540 | |
PROSITE | PS50188 PS50800 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
GO:0005654 |
nucleoplasm |
ECO:0000314 |
C |
Human hnRNP U. Figure 3, immunofluorescence spectroscopy confirmed localization to the nucleoplasm. |
complete | |||||
involved_in |
GO:1990845 |
adaptive thermogenesis |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0090336 |
positive regulation of brown fat cell differentiation |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003723 |
RNA binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
RNAcentral:URS00004416C5_9606 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0048255 |
mRNA stabilization |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003730 |
mRNA 3'-UTR binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0032991 |
protein-containing complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:1990904 |
ribonucleoprotein complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003714 |
transcription corepressor activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003723 |
RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003779 |
actin binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0071385 |
cellular response to glucocorticoid stimulus |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000122 |
negative regulation of transcription by RNA polymerase II |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0016607 |
nuclear speck |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0000993 |
RNA polymerase II complex binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0001097 |
TFIIH-class transcription factor complex binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
colocalizes_with |
GO:0090575 |
RNA polymerase II transcription factor complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0033673 |
negative regulation of kinase activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0034244 |
negative regulation of transcription elongation from RNA polymerase II promoter |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000381 |
regulation of alternative mRNA splicing, via spliceosome |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0017069 |
snRNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0036002 |
pre-mRNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0032991 |
protein-containing complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:1990904 |
ribonucleoprotein complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:1990837 |
sequence-specific double-stranded DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003682 |
chromatin binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0000228 |
nuclear chromosome |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:1990837 |
sequence-specific double-stranded DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0031490 |
chromatin DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003727 |
single-stranded RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003697 |
single-stranded DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0005524 |
ATP binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0042802 |
identical protein binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003723 |
RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003682 |
chromatin binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:1902275 |
regulation of chromatin organization |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1902889 |
protein localization to spindle microtubule |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:1990498 |
mitotic spindle microtubule |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0072686 |
mitotic spindle |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0000776 |
kinetochore |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:1990023 |
mitotic spindle midzone |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:1901673 |
regulation of mitotic spindle assembly |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0032991 |
protein-containing complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003682 |
chromatin binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:1990904 |
ribonucleoprotein complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:2000648 |
positive regulation of stem cell proliferation |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1990280 |
RNA localization to chromatin |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0009048 |
dosage compensation by inactivation of X chromosome |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003723 |
RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0016363 |
nuclear matrix |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0032991 |
protein-containing complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0034046 |
poly(G) binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0017130 |
poly(C) RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0008143 |
poly(A) binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003725 |
double-stranded RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003690 |
double-stranded DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003697 |
single-stranded DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:1902425 |
positive regulation of attachment of mitotic spindle microtubules to kinetochore |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007346 |
regulation of mitotic cell cycle |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0030496 |
midbody |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0072686 |
mitotic spindle |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005813 |
centrosome |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:1990841 |
promoter-specific chromatin binding |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0099122 |
RNA polymerase II C-terminal domain binding |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:2000737 |
negative regulation of stem cell differentiation |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:1990830 |
cellular response to leukemia inhibitory factor |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:2000737 |
negative regulation of stem cell differentiation |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:2000373 |
positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0044877 |
protein-containing complex binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0043021 |
ribonucleoprotein complex binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003714 |
transcription corepressor activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051457 |
maintenance of protein location in nucleus |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032211 |
negative regulation of telomere maintenance via telomerase |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0070034 |
telomerase RNA binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
RNAcentral:URS00004A7003_9606 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005697 |
telomerase holoenzyme complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0098577 |
inactive sex chromosome |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0016363 |
nuclear matrix |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003697 |
single-stranded DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003690 |
double-stranded DNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003727 |
single-stranded RNA binding |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0009986 |
cell surface |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0000978 |
RNA polymerase II proximal promoter sequence-specific DNA binding |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032922 |
circadian regulation of gene expression |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000250 |
sequence similarity evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0016020 |
membrane |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0036464 |
cytoplasmic ribonucleoprotein granule |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0016020 |
membrane |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
part_of:(CL:0000134)|part_of:(CL:0000062) |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0001649 |
osteoblast differentiation |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
P |
results_in_determination_of:(CL:0000134) |
Seeded From UniProt |
complete | ||
part_of |
GO:0071013 |
catalytic step 2 spliceosome |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0070937 |
CRD-mediated mRNA stability complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0070934 |
CRD-mediated mRNA stabilization |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003723 |
RNA binding |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003723 |
RNA binding |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:1990904 |
ribonucleoprotein complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0000398 |
mRNA splicing, via spliceosome |
ECO:0000305 |
curator inference used in manual assertion |
GO:0071013 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0032839 |
dendrite cytoplasm |
ECO:0000366 |
evidence based on logical inference from automatic annotation used in automatic assertion |
GO:0098963 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:2000737 |
negative regulation of stem cell differentiation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q8VEK3 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:2000648 |
positive regulation of stem cell proliferation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q8VEK3 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:1990845 |
adaptive thermogenesis |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q8VEK3 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:1990841 |
promoter-specific chromatin binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q8VEK3 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:1990830 |
cellular response to leukemia inhibitory factor |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q8VEK3 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:1990280 |
RNA localization to chromatin |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q8VEK3 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0099122 |
RNA polymerase II C-terminal domain binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q8VEK3 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0098963 |
dendritic transport of messenger ribonucleoprotein complex |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q8VEK3 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0098577 |
inactive sex chromosome |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q8VEK3 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0090336 |
positive regulation of brown fat cell differentiation |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q8VEK3 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0055013 |
cardiac muscle cell development |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q8VEK3 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0045944 |
positive regulation of transcription by RNA polymerase II |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q8VEK3 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0043565 |
sequence-specific DNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q8VEK3 |
F |
Seeded From UniProt |
complete | ||
involved_in |
GO:0032922 |
circadian regulation of gene expression |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q8VEK3 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0009048 |
dosage compensation by inactivation of X chromosome |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q8VEK3 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q8VEK3 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003723 |
RNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q8VEK3 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000978 |
RNA polymerase II proximal promoter sequence-specific DNA binding |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q8VEK3 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006396 |
RNA processing |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003723 |
RNA binding |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0016070 |
RNA metabolic process |
Reactome:R-HSA-8953854 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005654 |
nucleoplasm |
Reactome:R-HSA-72160 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
involved_in |
GO:0000398 |
mRNA splicing, via spliceosome |
Reactome:R-HSA-72163 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0006325 |
chromatin organization |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007275 |
multicellular organism development |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0005524 |
ATP binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0000775 |
chromosome, centromeric region |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0000776 |
kinetochore |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0007049 |
cell cycle |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0051301 |
cell division |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006397 |
mRNA processing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0000166 |
nucleotide binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005737 |
cytoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005681 |
spliceosomal complex |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0048511 |
rhythmic process |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0030154 |
cell differentiation |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0003723 |
RNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005694 |
chromosome |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0003677 |
DNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005856 |
cytoskeleton |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0008380 |
RNA splicing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0016607 |
nuclear speck |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0030496 |
midbody |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005819 |
spindle |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0016363 |
nuclear matrix |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0000777 |
condensed chromosome kinetochore |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005815 |
microtubule organizing center |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0000922 |
spindle pole |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0009986 |
cell surface |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Capitanio, JS et al. (2017) Human Nup98 regulates the localization and activity of DExH/D-box helicase DHX9. Elife 6 PubMed GONUTS page
- ↑ 2.0 2.1 2.2 2.3 Fu, D & Collins, K (2007) Purification of human telomerase complexes identifies factors involved in telomerase biogenesis and telomere length regulation. Mol. Cell 28 773-85 PubMed GONUTS page
- ↑ 3.0 3.1 Yugami, M et al. (2007) hnRNP-U enhances the expression of specific genes by stabilizing mRNA. FEBS Lett. 581 1-7 PubMed GONUTS page
- ↑ 4.0 4.1 4.2 4.3 4.4 4.5 4.6 Ameyar-Zazoua, M et al. (2009) Physical and functional interaction between heterochromatin protein 1alpha and the RNA-binding protein heterogeneous nuclear ribonucleoprotein U. J. Biol. Chem. 284 27974-9 PubMed GONUTS page
- ↑ 5.0 5.1 Bi, HS et al. (2013) H19 inhibits RNA polymerase II-mediated transcription by disrupting the hnRNP U-actin complex. Biochim. Biophys. Acta 1830 4899-906 PubMed GONUTS page
- ↑ 6.0 6.1 Kukalev, A et al. (2005) Actin and hnRNP U cooperate for productive transcription by RNA polymerase II. Nat. Struct. Mol. Biol. 12 238-44 PubMed GONUTS page
- ↑ 7.0 7.1 7.2 7.3 Eggert, M et al. (1997) The glucocorticoid receptor is associated with the RNA-binding nuclear matrix protein hnRNP U. J. Biol. Chem. 272 28471-8 PubMed GONUTS page
- ↑ 8.0 8.1 8.2 8.3 8.4 Kim, MK & Nikodem, VM (1999) hnRNP U inhibits carboxy-terminal domain phosphorylation by TFIIH and represses RNA polymerase II elongation. Mol. Cell. Biol. 19 6833-44 PubMed GONUTS page
- ↑ 9.0 9.1 9.2 Xiao, R et al. (2012) Nuclear matrix factor hnRNP U/SAF-A exerts a global control of alternative splicing by regulating U2 snRNP maturation. Mol. Cell 45 656-68 PubMed GONUTS page
- ↑ 10.0 10.1 Göhring, F & Fackelmayer, FO (1997) The scaffold/matrix attachment region binding protein hnRNP-U (SAF-A) is directly bound to chromosomal DNA in vivo: a chemical cross-linking study. Biochemistry 36 8276-83 PubMed GONUTS page
- ↑ 11.0 11.1 11.2 11.3 Göhring, F et al. (1997) The novel SAR-binding domain of scaffold attachment factor A (SAF-A) is a target in apoptotic nuclear breakdown. EMBO J. 16 7361-71 PubMed GONUTS page
- ↑ 12.0 12.1 12.2 12.3 Kipp, M et al. (2000) SAF-Box, a conserved protein domain that specifically recognizes scaffold attachment region DNA. Mol. Cell. Biol. 20 7480-9 PubMed GONUTS page
- ↑ 13.0 13.1 13.2 13.3 13.4 Kiledjian, M & Dreyfuss, G (1992) Primary structure and binding activity of the hnRNP U protein: binding RNA through RGG box. EMBO J. 11 2655-64 PubMed GONUTS page
- ↑ 14.0 14.1 14.2 14.3 14.4 Nozawa, RS et al. (2017) SAF-A Regulates Interphase Chromosome Structure through Oligomerization with Chromatin-Associated RNAs. Cell 169 1214-1227.e18 PubMed GONUTS page
- ↑ 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.7 Ma, N et al. (2011) The nuclear scaffold protein SAF-A is required for kinetochore-microtubule attachment and contributes to the targeting of Aurora-A to mitotic spindles. J. Cell. Sci. 124 394-404 PubMed GONUTS page
- ↑ 16.0 16.1 16.2 Martens, JH et al. (2002) Scaffold/matrix attachment region elements interact with a p300-scaffold attachment factor A complex and are bound by acetylated nucleosomes. Mol. Cell. Biol. 22 2598-606 PubMed GONUTS page
- ↑ Yamada, N et al. (2015) Xist Exon 7 Contributes to the Stable Localization of Xist RNA on the Inactive X-Chromosome. PLoS Genet. 11 e1005430 PubMed GONUTS page
- ↑ 18.0 18.1 18.2 18.3 18.4 18.5 18.6 18.7 Fackelmayer, FO et al. (1994) Nucleic-acid-binding properties of hnRNP-U/SAF-A, a nuclear-matrix protein which binds DNA and RNA in vivo and in vitro. Eur. J. Biochem. 221 749-57 PubMed GONUTS page
- ↑ 19.0 19.1 19.2 19.3 Douglas, P et al. (2015) Phosphorylation of SAF-A/hnRNP-U Serine 59 by Polo-Like Kinase 1 Is Required for Mitosis. Mol. Cell. Biol. 35 2699-713 PubMed GONUTS page
- ↑ Vizlin-Hodzic, D et al. (2011) SAF-A has a role in transcriptional regulation of Oct4 in ES cells through promoter binding. Cell Reprogram 13 13-27 PubMed GONUTS page
- ↑ 21.0 21.1 21.2 Helbig, R & Fackelmayer, FO (2003) Scaffold attachment factor A (SAF-A) is concentrated in inactive X chromosome territories through its RGG domain. Chromosoma 112 173-82 PubMed GONUTS page
- ↑ 22.0 22.1 22.2 Fackelmayer, FO & Richter, A (1994) Purification of two isoforms of hnRNP-U and characterization of their nucleic acid binding activity. Biochemistry 33 10416-22 PubMed GONUTS page
- ↑ Jordan, P et al. (1994) Major cell surface-located protein substrates of an ecto-protein kinase are homologs of known nuclear proteins. Biochemistry 33 14696-706 PubMed GONUTS page
- ↑ Ghosh, D et al. (2010) Defining the membrane proteome of NK cells. J Mass Spectrom 45 1-25 PubMed GONUTS page
- ↑ Villacé, P et al. (2004) The composition of Staufen-containing RNA granules from human cells indicates their role in the regulated transport and translation of messenger RNAs. Nucleic Acids Res. 32 2411-20 PubMed GONUTS page
- ↑ 26.0 26.1 Foster, LJ et al. (2005) Differential expression profiling of membrane proteins by quantitative proteomics in a human mesenchymal stem cell line undergoing osteoblast differentiation. Stem Cells 23 1367-77 PubMed GONUTS page
- ↑ Todd, MA & Picketts, DJ (2012) PHF6 interacts with the nucleosome remodeling and deacetylation (NuRD) complex. J. Proteome Res. 11 4326-37 PubMed GONUTS page
- ↑ 28.0 28.1 Jurica, MS et al. (2002) Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. RNA 8 426-39 PubMed GONUTS page
- ↑ 29.0 29.1 Weidensdorfer, D et al. (2009) Control of c-myc mRNA stability by IGF2BP1-associated cytoplasmic RNPs. RNA 15 104-15 PubMed GONUTS page
- ↑ Baltz, AG et al. (2012) The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Mol. Cell 46 674-90 PubMed GONUTS page
- ↑ Castello, A et al. (2012) Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Cell 149 1393-406 PubMed GONUTS page
- ↑ Jønson, L et al. (2007) Molecular composition of IMP1 ribonucleoprotein granules. Mol. Cell Proteomics 6 798-811 PubMed GONUTS page
c
- GO:0055013 ! cardiac muscle cell development
- GO:0071013 ! catalytic step 2 spliceosome
- Catarrhini
- GO:1990830 ! cellular response to leukemia inhibitory factor
- GO:0071385 ! cellular response to glucocorticoid stimulus
- GO:0007049 ! cell cycle
- GO:0030154 ! cell differentiation
- GO:0051301 ! cell division
- GO:0009986 ! cell surface
- GO:0005813 ! centrosome
- Chordata
- GO:0003682 ! chromatin binding
- GO:0031490 ! chromatin DNA binding
- GO:0006325 ! chromatin organization
- GO:0005694 ! chromosome
- GO:0000775 ! chromosome, centromeric region
- GO:0032922 ! circadian regulation of gene expression
- GO:0000777 ! condensed chromosome kinetochore
- Craniata
- GO:0070937 ! CRD-mediated mRNA stability complex
- GO:0070934 ! CRD-mediated mRNA stabilization
- GO:0005737 ! cytoplasm
- GO:0036464 ! cytoplasmic ribonucleoprotein granule
- GO:0005856 ! cytoskeleton
d
m
- GO:0051457 ! maintenance of protein location in nucleus
- Mammalia
- GO:0016020 ! membrane
- Metazoa
- GO:0005815 ! microtubule organizing center
- GO:0030496 ! midbody
- GO:1990023 ! mitotic spindle midzone
- GO:0072686 ! mitotic spindle
- GO:1990498 ! mitotic spindle microtubule
- GO:0003730 ! mRNA 3'-UTR binding
- GO:0006397 ! mRNA processing
- GO:0000398 ! mRNA splicing, via spliceosome
- GO:0048255 ! mRNA stabilization
- GO:0007275 ! multicellular organism development
n
- GO:0034244 ! negative regulation of transcription elongation by RNA polymerase II
- GO:0033673 ! negative regulation of kinase activity
- GO:2000737 ! negative regulation of stem cell differentiation
- GO:0032211 ! negative regulation of telomere maintenance via telomerase
- GO:0000122 ! negative regulation of transcription by RNA polymerase II
- GO:0000228 ! nuclear chromosome
- GO:0016363 ! nuclear matrix
- GO:0016607 ! nuclear speck
- GO:0005654 ! nucleoplasm
- GO:0000166 ! nucleotide binding
- GO:0005634 ! nucleus
p
- GO:0008143 ! poly(A) binding
- GO:0017130 ! poly(C) RNA binding
- GO:0034046 ! poly(G) binding
- GO:2000373 ! positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
- GO:1902425 ! positive regulation of attachment of mitotic spindle microtubules to kinetochore
- GO:0045944 ! positive regulation of transcription by RNA polymerase II
- GO:0090336 ! positive regulation of brown fat cell differentiation
- GO:2000648 ! positive regulation of stem cell proliferation
- GO:0036002 ! pre-mRNA binding
- Primates
- GO:1990841 ! promoter-specific chromatin binding
- GO:0044877 ! protein-containing complex binding
- GO:0032991 ! protein-containing complex
- GO:1902889 ! protein localization to spindle microtubule
r
- GO:0000381 ! regulation of alternative mRNA splicing, via spliceosome
- GO:1902275 ! regulation of chromatin organization
- GO:1901673 ! regulation of mitotic spindle assembly
- GO:0007346 ! regulation of mitotic cell cycle
- GO:0048511 ! rhythmic process
- GO:0043021 ! ribonucleoprotein complex binding
- GO:1990904 ! ribonucleoprotein complex
- GO:0003723 ! RNA binding
- GO:1990280 ! RNA localization to chromatin
- GO:0016070 ! RNA metabolic process
- GO:0099122 ! RNA polymerase II C-terminal domain binding
- GO:0000993 ! RNA polymerase II complex binding
- GO:0090575 ! RNA polymerase II transcription regulator complex
- GO:0000978 ! RNA polymerase II cis-regulatory region sequence-specific DNA binding
- GO:0006396 ! RNA processing
- GO:0008380 ! RNA splicing
s
t