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HUMAN:HDAC3

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Species (Taxon ID) Homo sapiens (Human). (9606)
Gene Name(s) HDAC3
Protein Name(s) Histone deacetylase 3

HD3 RPD3-2 SMAP45

External Links
UniProt O15379
EMBL U66914
U75697
U75696
AF005482
AF039703
AF059650
CH471062
CH471062
BC000614
AF053138
AF053137
AF053139
CCDS CCDS4264.1
PIR JC5834
RefSeq NP_003874.2
UniGene Hs.519632
PDB 4A69
PDBsum 4A69
ProteinModelPortal O15379
SMR O15379
BioGrid 114368
DIP DIP-24253N
IntAct O15379
MINT MINT-196172
STRING 9606.ENSP00000302967
BindingDB O15379
ChEMBL CHEMBL3038484
DrugBank DB02546
GuidetoPHARMACOLOGY 2617
PhosphoSite O15379
MaxQB O15379
PaxDb O15379
PRIDE O15379
DNASU 8841
Ensembl ENST00000305264
GeneID 8841
KEGG hsa:8841
UCSC uc003lle.1
CTD 8841
GeneCards GC05M140980
HGNC HGNC:4854
HPA CAB005583
MIM 605166
neXtProt NX_O15379
PharmGKB PA29228
eggNOG COG0123
GeneTree ENSGT00530000062889
HOGENOM HOG000225180
HOVERGEN HBG057112
InParanoid O15379
KO K11404
OMA LFDFCSM
OrthoDB EOG7DNNTW
PhylomeDB O15379
TreeFam TF352182
Reactome REACT_111118
REACT_116145
REACT_118659
REACT_118780
REACT_118789
REACT_13695
REACT_160243
REACT_160254
REACT_19241
REACT_200608
REACT_228222
REACT_24941
REACT_27161
SABIO-RK O15379
SignaLink O15379
ChiTaRS HDAC3
GeneWiki HDAC3
GenomeRNAi 8841
NextBio 33190
PMAP-CutDB O15379
PRO PR:O15379
Proteomes UP000005640
Bgee O15379
CleanEx HS_HDAC3
ExpressionAtlas O15379
Genevestigator O15379
GO GO:0005737
GO:0000118
GO:0005654
GO:0005634
GO:0005876
GO:0017053
GO:0003682
GO:0031490
GO:0030332
GO:0019899
GO:0004407
GO:0042826
GO:0032041
GO:0097372
GO:0046969
GO:0046970
GO:0033558
GO:0003714
GO:0008134
GO:0044255
GO:0016568
GO:0032922
GO:0043066
GO:0045786
GO:0046329
GO:0000122
GO:0045892
GO:0048011
GO:0007219
GO:0006476
GO:0007346
GO:0040014
GO:0044281
GO:0051225
GO:0006351
Gene3D 3.40.800.20
InterPro IPR000286
IPR003084
IPR023801
PANTHER PTHR10625
Pfam PF00850
PIRSF PIRSF037913
PRINTS PR01270
PR01271

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status
GO:0006303

double-strand break repair via nonhomologous end joining

PMID:21075309[1]

ECO:0000315

P

Figure 1, F

complete

involved_in

GO:0032922

circadian regulation of gene expression

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:O88895

P

Seeded From UniProt

complete

involved_in

GO:0031398

positive regulation of protein ubiquitination

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:O88895

P

Seeded From UniProt

complete

involved_in

GO:0042752

regulation of circadian rhythm

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:O88895

P

Seeded From UniProt

complete

involved_in

GO:0120162

positive regulation of cold-induced thermogenesis

PMID:28614293[2]

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:O88895

P

Seeded From UniProt

complete

part_of

GO:0000118

histone deacetylase complex

PMID:18326024[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0006476

protein deacetylation

PMID:21030595[4]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

PMID:21030595[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21030595[4]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0051059

NF-kappaB binding

PMID:17785205[5]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q04206

F

Seeded From UniProt

complete

enables

GO:0042826

histone deacetylase binding

PMID:23867755[6]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q9UQL6

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:25190803[7]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0032008

positive regulation of TOR signaling

PMID:25190803[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0001934

positive regulation of protein phosphorylation

PMID:25190803[7]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0042307

positive regulation of protein import into nucleus

PMID:25190803[7]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0031647

regulation of protein stability

PMID:25190803[7]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:25190803[7]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0071498

cellular response to fluid shear stress

PMID:25190803[7]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0042826

histone deacetylase binding

PMID:12590135[8]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q9UKV0

F

Seeded From UniProt

complete

enables

GO:0042826

histone deacetylase binding

PMID:10869435[9]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P56524

F

Seeded From UniProt

complete

enables

GO:0042826

histone deacetylase binding

PMID:10869435[9]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q9UQL6

F

Seeded From UniProt

complete

part_of

GO:0017053

transcriptional repressor complex

PMID:11804585[10]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

NOT|involved_in

GO:0010832

negative regulation of myotube differentiation

PMID:10983972[11]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:18347167[12]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:18854353[13]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0051225

spindle assembly

PMID:18326024[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0046329

negative regulation of JNK cascade

PMID:11931768[14]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045892

negative regulation of transcription, DNA-templated

PMID:16924111[15]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0033558

protein deacetylase activity

PMID:17172643[16]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0030332

cyclin binding

PMID:18417529[17]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:P24385

F

Seeded From UniProt

complete

enables

GO:0019899

enzyme binding

PMID:11641274[18]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q9NWT6

F

Seeded From UniProt

complete

part_of

GO:0017053

transcriptional repressor complex

PMID:18417529[17]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0017053

transcriptional repressor complex

PMID:16569215[19]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0017053

transcriptional repressor complex

PMID:12628926[20]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0008134

transcription factor binding

PMID:16569215[19]

ECO:0000353

physical interaction evidence used in manual assertion

UniProtKB:Q01101

F

Seeded From UniProt

complete

involved_in

GO:0006476

protein deacetylation

PMID:17172643[16]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0072686

mitotic spindle

PMID:18326024[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:18326024[3]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0004407

histone deacetylase activity

PMID:16924111[15]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0004407

histone deacetylase activity

PMID:18326024[3]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003714

transcription corepressor activity

PMID:12628926[20]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003714

transcription corepressor activity

PMID:18417529[17]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003714

transcription corepressor activity

PMID:16569215[19]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003682

chromatin binding

PMID:18417529[17]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003682

chromatin binding

PMID:16569215[19]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:12628926[20]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:18417529[17]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0000122

negative regulation of transcription by RNA polymerase II

PMID:16569215[19]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0070933

histone H4 deacetylation

PMID:21873635[21]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:108086
MGI:MGI:1097691
MGI:MGI:1343091
PANTHER:PTN002578320
PomBase:SPAC3G9.07c
SGD:S000005274
SGD:S000006272
UniProtKB:G5EB64
UniProtKB:Q13547

P

Seeded From UniProt

complete

involved_in

GO:0070932

histone H3 deacetylation

PMID:21873635[21]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:108086
MGI:MGI:1097691
PANTHER:PTN002578320
RGD:1309799
RGD:619976
RGD:619977
SGD:S000005274
TAIR:locus:2098115
UniProtKB:G5EB64
UniProtKB:Q13547

P

Seeded From UniProt

complete

involved_in

GO:0045944

positive regulation of transcription by RNA polymerase II

PMID:21873635[21]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN002578320
PomBase:SPBC36.05c
SGD:S000005274
SGD:S000006272
UniProtKB:O15379
UniProtKB:Q13547
UniProtKB:Q92769
WB:WBGene00001834

P

Seeded From UniProt

complete

enables

GO:0004407

histone deacetylase activity

PMID:21873635[21]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0015805
FB:FBgn0025825
MGI:MGI:108086
MGI:MGI:1097691
PANTHER:PTN002578320
PomBase:SPAC3G9.07c
PomBase:SPBC36.05c
RGD:1309799
SGD:S000003162
SGD:S000005274
TAIR:locus:2162017
UniProtKB:G5EB64
UniProtKB:O15379
UniProtKB:Q13547
UniProtKB:Q7K6A1
UniProtKB:Q92769
WB:WBGene00001834
dictyBase:DDB_G0270338

F

Seeded From UniProt

complete

part_of

GO:0000118

histone deacetylase complex

PMID:21873635[21]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0015805
MGI:MGI:108086
PANTHER:PTN002578320
PomBase:SPAC3G9.07c
PomBase:SPBC36.05c
SGD:S000003162
SGD:S000005274
SGD:S000006272
UniProtKB:Q13547
UniProtKB:Q92769
WB:WBGene00001834

C

Seeded From UniProt

complete

part_of

GO:0005886

plasma membrane

GO_REF:0000052

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005794

Golgi apparatus

GO_REF:0000052

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000052

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0004407

histone deacetylase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR003084

F

Seeded From UniProt

complete

involved_in

GO:0016575

histone deacetylation

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR003084

P

Seeded From UniProt

complete

enables

GO:0004407

histone deacetylase activity

GO_REF:0000003

ECO:0000501

evidence used in automatic assertion

EC:3.5.1.98

F

Seeded From UniProt

complete

enables

GO:0032041

NAD-dependent histone deacetylase activity (H3-K14 specific)

GO_REF:0000003

ECO:0000501

evidence used in automatic assertion

EC:3.5.1.98

F

Seeded From UniProt

complete

enables

GO:0003714

transcription corepressor activity

GO_REF:0000024

ECO:0000250

sequence similarity evidence used in manual assertion

UniProtKB:P56520

F

Seeded From UniProt

complete

involved_in

GO:1903507

negative regulation of nucleic acid-templated transcription

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0003714

P

Seeded From UniProt

complete

involved_in

GO:0043066

negative regulation of apoptotic process

PMID:10777477[22]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:9501169[23]
PMID:12711221[24]

ECO:0000304

author statement supported by traceable reference used in manual assertion


C

Seeded From UniProt

complete

enables

GO:0004407

histone deacetylase activity

PMID:10777477[22]
PMID:12711221[24]

ECO:0000304

author statement supported by traceable reference used in manual assertion


F

Seeded From UniProt

complete

involved_in

GO:0006325

chromatin organization

PMID:12711221[24]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0008134

transcription factor binding

PMID:12711221[24]

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

PMID:12711221[24]

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0000118

histone deacetylase complex

PMID:12711221[24]

ECO:0000304

author statement supported by traceable reference used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0019216

regulation of lipid metabolic process

Reactome:R-HSA-400206

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0007623

circadian rhythm

Reactome:R-HSA-400253

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

Reactome:R-HSA-5663271
Reactome:R-HSA-5663265
Reactome:R-HSA-5663258
Reactome:R-HSA-5663245
Reactome:R-HSA-400183
Reactome:R-HSA-400143
Reactome:R-HSA-3777129
Reactome:R-HSA-2220982
Reactome:R-HSA-1368069

ECO:0000304

author statement supported by traceable reference used in manual assertion









C

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0378

F

Seeded From UniProt

complete

part_of

GO:0005737

cytoplasm

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0963
UniProtKB-SubCell:SL-0086

C

Seeded From UniProt

complete

involved_in

GO:0006325

chromatin organization

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0156

P

Seeded From UniProt

complete

involved_in

GO:0048511

rhythmic process

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0090

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

part_of

GO:0005829

cytosol

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0091

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. Bhaskara, S et al. (2010) Hdac3 is essential for the maintenance of chromatin structure and genome stability. Cancer Cell 18 436-47 PubMed GONUTS page
  2. Emmett, MJ et al. (2017) Histone deacetylase 3 prepares brown adipose tissue for acute thermogenic challenge. Nature 546 544-548 PubMed GONUTS page
  3. 3.0 3.1 3.2 3.3 3.4 Ishii, S et al. (2008) Histone deacetylase 3 localizes to the mitotic spindle and is required for kinetochore-microtubule attachment. Proc. Natl. Acad. Sci. U.S.A. 105 4179-84 PubMed GONUTS page
  4. 4.0 4.1 4.2 Chini, CC et al. (2010) HDAC3 is negatively regulated by the nuclear protein DBC1. J. Biol. Chem. 285 40830-7 PubMed GONUTS page
  5. Wang, J et al. (2007) LZAP, a putative tumor suppressor, selectively inhibits NF-kappaB. Cancer Cell 12 239-51 PubMed GONUTS page
  6. Chang, CW et al. (2013) Involvement of Epac1/Rap1/CaMKI/HDAC5 signaling cascade in the regulation of placental cell fusion. Mol. Hum. Reprod. 19 745-55 PubMed GONUTS page
  7. 7.0 7.1 7.2 7.3 7.4 7.5 7.6 Martin, D et al. (2014) Unspliced X-box-binding protein 1 (XBP1) protects endothelial cells from oxidative stress through interaction with histone deacetylase 3. J. Biol. Chem. 289 30625-34 PubMed GONUTS page
  8. Petrie, K et al. (2003) The histone deacetylase 9 gene encodes multiple protein isoforms. J. Biol. Chem. 278 16059-72 PubMed GONUTS page
  9. 9.0 9.1 Grozinger, CM & Schreiber, SL (2000) Regulation of histone deacetylase 4 and 5 and transcriptional activity by 14-3-3-dependent cellular localization. Proc. Natl. Acad. Sci. U.S.A. 97 7835-40 PubMed GONUTS page
  10. Fischle, W et al. (2002) Enzymatic activity associated with class II HDACs is dependent on a multiprotein complex containing HDAC3 and SMRT/N-CoR. Mol. Cell 9 45-57 PubMed GONUTS page
  11. Lu, J et al. (2000) Regulation of skeletal myogenesis by association of the MEF2 transcription factor with class II histone deacetylases. Mol. Cell 6 233-44 PubMed GONUTS page
  12. Weichert, W et al. (2008) Class I histone deacetylase expression has independent prognostic impact in human colorectal cancer: specific role of class I histone deacetylases in vitro and in vivo. Clin. Cancer Res. 14 1669-77 PubMed GONUTS page
  13. Jahnke, P et al. (2008) The Cohesin loading factor NIPBL recruits histone deacetylases to mediate local chromatin modifications. Nucleic Acids Res. 36 6450-8 PubMed GONUTS page
  14. Zhang, J et al. (2002) The N-CoR-HDAC3 nuclear receptor corepressor complex inhibits the JNK pathway through the integral subunit GPS2. Mol. Cell 9 611-23 PubMed GONUTS page
  15. 15.0 15.1 Kim, MY et al. (2006) A repressor complex, AP4 transcription factor and geminin, negatively regulates expression of target genes in nonneuronal cells. Proc. Natl. Acad. Sci. U.S.A. 103 13074-9 PubMed GONUTS page
  16. 16.0 16.1 Shimazu, T et al. (2007) Multiple histone deacetylases and the CREB-binding protein regulate pre-mRNA 3'-end processing. J. Biol. Chem. 282 4470-8 PubMed GONUTS page
  17. 17.0 17.1 17.2 17.3 17.4 Wang, HW et al. (2008) Identification of an INSM1-binding site in the insulin promoter: negative regulation of the insulin gene transcription. J. Endocrinol. 198 29-39 PubMed GONUTS page
  18. Mahon, PC et al. (2001) FIH-1: a novel protein that interacts with HIF-1alpha and VHL to mediate repression of HIF-1 transcriptional activity. Genes Dev. 15 2675-86 PubMed GONUTS page
  19. 19.0 19.1 19.2 19.3 19.4 Liu, WD et al. (2006) INSM1 functions as a transcriptional repressor of the neuroD/beta2 gene through the recruitment of cyclin D1 and histone deacetylases. Biochem. J. 397 169-77 PubMed GONUTS page
  20. 20.0 20.1 20.2 Yoon, HG et al. (2003) Purification and functional characterization of the human N-CoR complex: the roles of HDAC3, TBL1 and TBLR1. EMBO J. 22 1336-46 PubMed GONUTS page
  21. 21.0 21.1 21.2 21.3 21.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
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