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HUMAN:FEN1

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Species (Taxon ID) Homo sapiens (Human). (9606)
Gene Name(s) FEN1 (ECO:0000255 with HAMAP-Rule:MF_03140) (synonyms: RAD2)
Protein Name(s) Flap endonuclease 1 (ECO:0000255 with HAMAP-Rule:MF_03140)

FEN-1 (ECO:0000255 with HAMAP-Rule:MF_03140) DNase IV Flap structure-specific endonuclease 1 (ECO:0000255 with HAMAP-Rule:MF_03140) Maturation factor 1 MF1 hFEN-1

External Links
UniProt P39748
EMBL X76771
L37374
AF523117
AC004770
BC000323
CCDS CCDS8010.1
PIR A56531
RefSeq NP_004102.1
UniGene Hs.409065
PDB 1U7B
1UL1
3Q8K
3Q8L
3Q8M
3UVU
PDBsum 1U7B
1UL1
3Q8K
3Q8L
3Q8M
3UVU
ProteinModelPortal P39748
SMR P39748
BioGrid 108528
DIP DIP-24216N
IntAct P39748
MINT MINT-5004212
STRING 9606.ENSP00000305480
BindingDB P39748
ChEMBL CHEMBL5027
PhosphoSite P39748
DMDM 729475
MaxQB P39748
PaxDb P39748
PeptideAtlas P39748
PRIDE P39748
DNASU 2237
Ensembl ENST00000305885
GeneID 2237
KEGG hsa:2237
UCSC uc001nsg.3
CTD 2237
GeneCards GC11P061560
HGNC HGNC:3650
HPA CAB002262
HPA006748
MIM 600393
neXtProt NX_P39748
PharmGKB PA28090
eggNOG COG0258
HOGENOM HOG000193853
HOVERGEN HBG000844
InParanoid P39748
KO K04799
OMA GSQDYDS
OrthoDB EOG72JWHG
PhylomeDB P39748
TreeFam TF105701
Reactome REACT_2192
REACT_70
REACT_7999
SignaLink P39748
ChiTaRS FEN1
EvolutionaryTrace P39748
GeneWiki Flap_structure-specific_endonuclease_1
GenomeRNAi 2237
NextBio 9055
PRO PR:P39748
Proteomes UP000005640
Bgee P39748
CleanEx HS_FEN1
ExpressionAtlas P39748
Genevestigator P39748
GO GO:0016020
GO:0005739
GO:0005730
GO:0005654
GO:0005634
GO:0008409
GO:0017108
GO:0003684
GO:0003677
GO:0003690
GO:0008309
GO:0004519
GO:0004527
GO:0000287
GO:0030145
GO:0004523
GO:0006284
GO:0000737
GO:0000738
GO:0006281
GO:0006260
GO:0043137
GO:0006271
GO:0006302
GO:0007613
GO:0000278
GO:0090502
GO:0000723
GO:0000722
GO:0032201
GO:0009650
Gene3D 3.40.50.1010
HAMAP MF_00614
InterPro IPR020045
IPR023426
IPR008918
IPR029060
IPR006086
IPR019974
IPR006085
Pfam PF00867
PF00752
SMART SM00279
SM00484
SM00485
SUPFAM SSF47807
SSF88723
PROSITE PS00841
PS00842

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

enables

GO:0048256

flap endonuclease activity

PMID:18499658[1]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0090305

nucleic acid phosphodiester bond hydrolysis

PMID:18499658[1]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0045876

positive regulation of sister chromatid cohesion

PMID:18499658[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

colocalizes_with

GO:0000784

nuclear chromosome, telomeric region

PMID:24270157[2]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0000784

nuclear chromosome, telomeric region

PMID:19135898[3]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0016020

membrane

PMID:19946888[4]

ECO:0007005

high throughput direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0043137

DNA replication, removal of RNA primer

PMID:18995831[5]

ECO:0000314

direct assay evidence used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0017108

5'-flap endonuclease activity

PMID:8621570[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0017108

5'-flap endonuclease activity

PMID:11986308[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0017108

5'-flap endonuclease activity

PMID:18995831[5]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0008409

5'-3' exonuclease activity

PMID:7961795[8]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

part_of

GO:0005739

mitochondrion

PMID:18995831[5]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:18995831[5]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:7961795[8]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0004523

RNA-DNA hybrid ribonuclease activity

PMID:7961795[8]

ECO:0000314

direct assay evidence used in manual assertion

F

Seeded From UniProt

complete

Contributes to

GO:0004519

endonuclease activity

PMID:25650046[9]

ECO:0000314

F

Cold adapted enzyme based on salt dependence

complete
CACAO 10572

enables

GO:0003677

DNA binding

PMID:11986308[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0048256

flap endonuclease activity

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0263831
MGI:MGI:102779
PANTHER:PTN000118612
PomBase:SPAC3G6.06c
SGD:S000001596
SGD:S000005559
UniProtKB:P39748
UniProtKB:Q17RS7
UniProtKB:Q64MA3
UniProtKB:Q7K734
UniProtKB:Q9UQ84
WB:WBGene00000794

F

Seeded From UniProt

complete

enables

GO:0030145

manganese ion binding

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:102779
PANTHER:PTN000871763

F

Seeded From UniProt

complete

enables

GO:0017108

5'-flap endonuclease activity

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

FB:FBgn0263831
PANTHER:PTN000118612
PomBase:SPAC3G6.06c
SGD:S000001596
SGD:S000005559
UniProtKB:P39748
UniProtKB:Q17RS7

F

Seeded From UniProt

complete

enables

GO:0008409

5'-3' exonuclease activity

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000118791
PomBase:SPAC3G6.06c
SGD:S000001596
UniProtKB:P39748

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000118792
RGD:621821
SGD:S000000843
SGD:S000001596
UniProtKB:P39748
WB:WBGene00000794

C

Seeded From UniProt

complete

enables

GO:0004523

RNA-DNA hybrid ribonuclease activity

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000871763
UniProtKB:P39748

F

Seeded From UniProt

complete

enables

GO:0000287

magnesium ion binding

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

MGI:MGI:102779
PANTHER:PTN000871763

F

Seeded From UniProt

complete

part_of

GO:0032991

protein-containing complex

PMID:25378300[11]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005730

nucleolus

GO_REF:0000052

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000052

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

involved_in

GO:0090502

RNA phosphodiester bond hydrolysis, endonucleolytic

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0004523

P

Seeded From UniProt

complete

involved_in

GO:0090502

RNA phosphodiester bond hydrolysis, endonucleolytic

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0004523

P

Seeded From UniProt

complete

involved_in

GO:0007613

memory

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q5XIP6
ensembl:ENSRNOP00000027842

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q5XIP6
ensembl:ENSRNOP00000027842

C

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR008918

F

Seeded From UniProt

complete

enables

GO:0003824

catalytic activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR008918

F

Seeded From UniProt

complete

enables

GO:0004518

nuclease activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR006084
InterPro:IPR006085
InterPro:IPR006086

F

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR006084
InterPro:IPR006085

P

Seeded From UniProt

complete

enables

GO:0016788

hydrolase activity, acting on ester bonds

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR019974
InterPro:IPR023426

F

Seeded From UniProt

complete

involved_in

GO:0006284

base-excision repair

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000337265

P

Seeded From UniProt

complete

enables

GO:0017108

5'-flap endonuclease activity

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000337265

F

Seeded From UniProt

complete

enables

GO:0008409

5'-3' exonuclease activity

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000337265

F

Seeded From UniProt

complete

part_of

GO:0005739

mitochondrion

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000337265

C

Seeded From UniProt

complete

involved_in

GO:0043137

DNA replication, removal of RNA primer

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000337265

P

Seeded From UniProt

complete

enables

GO:0000287

magnesium ion binding

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000337265

F

Seeded From UniProt

complete

enables

GO:0003677

DNA binding

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000337265

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000104

ECO:0000256

match to sequence model evidence used in automatic assertion

UniRule:UR000337265

C

Seeded From UniProt

complete

involved_in

GO:0009650

UV protection

PMID:8007985[12]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0008309

double-stranded DNA exodeoxyribonuclease activity

PMID:8131753[13]

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0006302

double-strand break repair

PMID:8131753[13]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

PMID:8007985[12]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006260

DNA replication

PMID:9778254[14]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0004527

exonuclease activity

PMID:9778254[14]

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0004519

endonuclease activity

PMID:8131753[13]

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003690

double-stranded DNA binding

PMID:8131753[13]

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

enables

GO:0003684

damaged DNA binding

PMID:8007985[12]

ECO:0000304

author statement supported by traceable reference used in manual assertion

F

Seeded From UniProt

complete

involved_in

GO:0032201

telomere maintenance via semi-conservative replication

Reactome:R-HSA-174446

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0017108

5'-flap endonuclease activity

Reactome:R-HSA-69152
Reactome:R-HSA-5687664
Reactome:R-HSA-5651782
Reactome:R-HSA-174446
Reactome:R-HSA-110363

ECO:0000304

author statement supported by traceable reference used in manual assertion





F

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

Reactome:R-HSA-69152
Reactome:R-HSA-5687664
Reactome:R-HSA-5687653
Reactome:R-HSA-5687640
Reactome:R-HSA-5687484
Reactome:R-HSA-5651782
Reactome:R-HSA-5651739
Reactome:R-HSA-5651723
Reactome:R-HSA-5649883
Reactome:R-HSA-5649873
Reactome:R-HSA-174446
Reactome:R-HSA-110368
Reactome:R-HSA-110364
Reactome:R-HSA-110363

ECO:0000304

author statement supported by traceable reference used in manual assertion














C

Seeded From UniProt

complete

involved_in

GO:0000724

double-strand break repair via homologous recombination

Reactome:R-HSA-5693538

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

enables

GO:0004527

exonuclease activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0269

F

Seeded From UniProt

complete

involved_in

GO:0006281

DNA repair

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0234

P

Seeded From UniProt

complete

enables

GO:0016787

hydrolase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0378

F

Seeded From UniProt

complete

part_of

GO:0005739

mitochondrion

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0496
UniProtKB-SubCell:SL-0173

C

Seeded From UniProt

complete

involved_in

GO:0006260

DNA replication

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0235

P

Seeded From UniProt

complete

enables

GO:0046872

metal ion binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0479

F

Seeded From UniProt

complete

enables

GO:0004519

endonuclease activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0255

F

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539

C

Seeded From UniProt

complete

enables

GO:0004518

nuclease activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0540

F

Seeded From UniProt

complete

involved_in

GO:0006974

cellular response to DNA damage stimulus

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0227

P

Seeded From UniProt

complete

part_of

GO:0005730

nucleolus

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0188

C

Seeded From UniProt

complete

part_of

GO:0005654

nucleoplasm

GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-SubCell:SL-0190

C

Seeded From UniProt

complete

Notes

References

See Help:References for how to manage references in GONUTS.

  1. 1.0 1.1 1.2 Farina, A et al. (2008) Studies with the human cohesin establishment factor, ChlR1. Association of ChlR1 with Ctf18-RFC and Fen1. J. Biol. Chem. 283 20925-36 PubMed GONUTS page
  2. Grolimund, L et al. (2013) A quantitative telomeric chromatin isolation protocol identifies different telomeric states. Nat Commun 4 2848 PubMed GONUTS page
  3. Déjardin, J & Kingston, RE (2009) Purification of proteins associated with specific genomic Loci. Cell 136 175-86 PubMed GONUTS page
  4. Ghosh, D et al. (2010) Defining the membrane proteome of NK cells. J Mass Spectrom 45 1-25 PubMed GONUTS page
  5. 5.0 5.1 5.2 5.3 Zheng, L et al. (2008) Human DNA2 is a mitochondrial nuclease/helicase for efficient processing of DNA replication and repair intermediates. Mol. Cell 32 325-36 PubMed GONUTS page
  6. Shen, B et al. (1996) Essential amino acids for substrate binding and catalysis of human flap endonuclease 1. J. Biol. Chem. 271 9173-6 PubMed GONUTS page
  7. 7.0 7.1 Qiu, J et al. (2002) Arginine residues 47 and 70 of human flap endonuclease-1 are involved in DNA substrate interactions and cleavage site determination. J. Biol. Chem. 277 24659-66 PubMed GONUTS page
  8. 8.0 8.1 8.2 Robins, P et al. (1994) Structural and functional homology between mammalian DNase IV and the 5'-nuclease domain of Escherichia coli DNA polymerase I. J. Biol. Chem. 269 28535-8 PubMed GONUTS page
  9. Benrezkallah, D et al. (2015) Molecular dynamics of the salt dependence of a cold-adapted enzyme: endonuclease I. J. Biomol. Struct. Dyn. 33 2511-21 PubMed GONUTS page
  10. 10.0 10.1 10.2 10.3 10.4 10.5 10.6 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  11. Szczesny, B et al. (2014) Opposing roles of mitochondrial and nuclear PARP1 in the regulation of mitochondrial and nuclear DNA integrity: implications for the regulation of mitochondrial function. Nucleic Acids Res. 42 13161-73 PubMed GONUTS page
  12. 12.0 12.1 12.2 Murray, JM et al. (1994) Structural and functional conservation of the human homolog of the Schizosaccharomyces pombe rad2 gene, which is required for chromosome segregation and recovery from DNA damage. Mol. Cell. Biol. 14 4878-88 PubMed GONUTS page
  13. 13.0 13.1 13.2 13.3 Harrington, JJ & Lieber, MR (1994) The characterization of a mammalian DNA structure-specific endonuclease. EMBO J. 13 1235-46 PubMed GONUTS page
  14. 14.0 14.1 Hosfield, DJ et al. (1998) Structure of the DNA repair and replication endonuclease and exonuclease FEN-1: coupling DNA and PCNA binding to FEN-1 activity. Cell 95 135-46 PubMed GONUTS page