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HUMAN:FEN1
Contents
Species (Taxon ID) | Homo sapiens (Human). (9606) | |
Gene Name(s) | FEN1 (ECO:0000255 with HAMAP-Rule:MF_03140) (synonyms: RAD2) | |
Protein Name(s) | Flap endonuclease 1 (ECO:0000255 with HAMAP-Rule:MF_03140)
FEN-1 (ECO:0000255 with HAMAP-Rule:MF_03140) DNase IV Flap structure-specific endonuclease 1 (ECO:0000255 with HAMAP-Rule:MF_03140) Maturation factor 1 MF1 hFEN-1 | |
External Links | ||
UniProt | P39748 | |
EMBL | X76771 L37374 AF523117 AC004770 BC000323 | |
CCDS | CCDS8010.1 | |
PIR | A56531 | |
RefSeq | NP_004102.1 | |
UniGene | Hs.409065 | |
PDB | 1U7B 1UL1 3Q8K 3Q8L 3Q8M 3UVU | |
PDBsum | 1U7B 1UL1 3Q8K 3Q8L 3Q8M 3UVU | |
ProteinModelPortal | P39748 | |
SMR | P39748 | |
BioGrid | 108528 | |
DIP | DIP-24216N | |
IntAct | P39748 | |
MINT | MINT-5004212 | |
STRING | 9606.ENSP00000305480 | |
BindingDB | P39748 | |
ChEMBL | CHEMBL5027 | |
PhosphoSite | P39748 | |
DMDM | 729475 | |
MaxQB | P39748 | |
PaxDb | P39748 | |
PeptideAtlas | P39748 | |
PRIDE | P39748 | |
DNASU | 2237 | |
Ensembl | ENST00000305885 | |
GeneID | 2237 | |
KEGG | hsa:2237 | |
UCSC | uc001nsg.3 | |
CTD | 2237 | |
GeneCards | GC11P061560 | |
HGNC | HGNC:3650 | |
HPA | CAB002262 HPA006748 | |
MIM | 600393 | |
neXtProt | NX_P39748 | |
PharmGKB | PA28090 | |
eggNOG | COG0258 | |
HOGENOM | HOG000193853 | |
HOVERGEN | HBG000844 | |
InParanoid | P39748 | |
KO | K04799 | |
OMA | GSQDYDS | |
OrthoDB | EOG72JWHG | |
PhylomeDB | P39748 | |
TreeFam | TF105701 | |
Reactome | REACT_2192 REACT_70 REACT_7999 | |
SignaLink | P39748 | |
ChiTaRS | FEN1 | |
EvolutionaryTrace | P39748 | |
GeneWiki | Flap_structure-specific_endonuclease_1 | |
GenomeRNAi | 2237 | |
NextBio | 9055 | |
PRO | PR:P39748 | |
Proteomes | UP000005640 | |
Bgee | P39748 | |
CleanEx | HS_FEN1 | |
ExpressionAtlas | P39748 | |
Genevestigator | P39748 | |
GO | GO:0016020 GO:0005739 GO:0005730 GO:0005654 GO:0005634 GO:0008409 GO:0017108 GO:0003684 GO:0003677 GO:0003690 GO:0008309 GO:0004519 GO:0004527 GO:0000287 GO:0030145 GO:0004523 GO:0006284 GO:0000737 GO:0000738 GO:0006281 GO:0006260 GO:0043137 GO:0006271 GO:0006302 GO:0007613 GO:0000278 GO:0090502 GO:0000723 GO:0000722 GO:0032201 GO:0009650 | |
Gene3D | 3.40.50.1010 | |
HAMAP | MF_00614 | |
InterPro | IPR020045 IPR023426 IPR008918 IPR029060 IPR006086 IPR019974 IPR006085 | |
Pfam | PF00867 PF00752 | |
SMART | SM00279 SM00484 SM00485 | |
SUPFAM | SSF47807 SSF88723 | |
PROSITE | PS00841 PS00842 |
Annotations
Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
---|---|---|---|---|---|---|---|---|---|---|
enables |
GO:0048256 |
flap endonuclease activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0045876 |
positive regulation of sister chromatid cohesion |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
colocalizes_with |
GO:0000784 |
nuclear chromosome, telomeric region |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0000784 |
nuclear chromosome, telomeric region |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0016020 |
membrane |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0043137 |
DNA replication, removal of RNA primer |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0017108 |
5'-flap endonuclease activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0017108 |
5'-flap endonuclease activity |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0017108 |
5'-flap endonuclease activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0008409 |
5'-3' exonuclease activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005739 |
mitochondrion |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0004523 |
RNA-DNA hybrid ribonuclease activity |
ECO:0000314 |
direct assay evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
Contributes to |
GO:0004519 |
endonuclease activity |
ECO:0000314 |
F |
Cold adapted enzyme based on salt dependence |
complete | ||||
enables |
GO:0003677 |
DNA binding |
ECO:0000315 |
mutant phenotype evidence used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0048256 |
flap endonuclease activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0263831 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0030145 |
manganese ion binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:102779 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0017108 |
5'-flap endonuclease activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
FB:FBgn0263831 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0008409 |
5'-3' exonuclease activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000118791 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000118792 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0004523 |
RNA-DNA hybrid ribonuclease activity |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000871763 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0000287 |
magnesium ion binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
MGI:MGI:102779 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0032991 |
protein-containing complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005730 |
nucleolus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0090502 |
RNA phosphodiester bond hydrolysis, endonucleolytic |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0004523 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0090502 |
RNA phosphodiester bond hydrolysis, endonucleolytic |
ECO:0000364 |
evidence based on logical inference from manual annotation used in automatic assertion |
GO:0004523 |
P |
Seeded From UniProt |
complete | ||
involved_in |
GO:0007613 |
memory |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q5XIP6 |
P |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000265 |
sequence orthology evidence used in automatic assertion |
UniProtKB:Q5XIP6 |
C |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003824 |
catalytic activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0004518 |
nuclease activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0016788 |
hydrolase activity, acting on ester bonds |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006284 |
base-excision repair |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000337265 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0017108 |
5'-flap endonuclease activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000337265 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0008409 |
5'-3' exonuclease activity |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000337265 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005739 |
mitochondrion |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000337265 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0043137 |
DNA replication, removal of RNA primer |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000337265 |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0000287 |
magnesium ion binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000337265 |
F |
Seeded From UniProt |
complete | ||
enables |
GO:0003677 |
DNA binding |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000337265 |
F |
Seeded From UniProt |
complete | ||
part_of |
GO:0005634 |
nucleus |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
UniRule:UR000337265 |
C |
Seeded From UniProt |
complete | ||
involved_in |
GO:0009650 |
UV protection |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0008309 |
double-stranded DNA exodeoxyribonuclease activity |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006302 |
double-strand break repair |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006260 |
DNA replication |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0004527 |
exonuclease activity |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0004519 |
endonuclease activity |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003690 |
double-stranded DNA binding |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0003684 |
damaged DNA binding |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0032201 |
telomere maintenance via semi-conservative replication |
Reactome:R-HSA-174446 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0017108 |
5'-flap endonuclease activity |
Reactome:R-HSA-69152 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
F |
Seeded From UniProt |
complete | |
part_of |
GO:0005654 |
nucleoplasm |
Reactome:R-HSA-69152 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
|
C |
Seeded From UniProt |
complete | |
involved_in |
GO:0000724 |
double-strand break repair via homologous recombination |
Reactome:R-HSA-5693538 |
ECO:0000304 |
author statement supported by traceable reference used in manual assertion |
P |
Seeded From UniProt |
complete | ||
enables |
GO:0004527 |
exonuclease activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006281 |
DNA repair |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0016787 |
hydrolase activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005739 |
mitochondrion |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006260 |
DNA replication |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
enables |
GO:0046872 |
metal ion binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
enables |
GO:0004519 |
endonuclease activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
enables |
GO:0004518 |
nuclease activity |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
involved_in |
GO:0006974 |
cellular response to DNA damage stimulus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
part_of |
GO:0005730 |
nucleolus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
part_of |
GO:0005654 |
nucleoplasm |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 1.2 Farina, A et al. (2008) Studies with the human cohesin establishment factor, ChlR1. Association of ChlR1 with Ctf18-RFC and Fen1. J. Biol. Chem. 283 20925-36 PubMed GONUTS page
- ↑ Grolimund, L et al. (2013) A quantitative telomeric chromatin isolation protocol identifies different telomeric states. Nat Commun 4 2848 PubMed GONUTS page
- ↑ Déjardin, J & Kingston, RE (2009) Purification of proteins associated with specific genomic Loci. Cell 136 175-86 PubMed GONUTS page
- ↑ Ghosh, D et al. (2010) Defining the membrane proteome of NK cells. J Mass Spectrom 45 1-25 PubMed GONUTS page
- ↑ 5.0 5.1 5.2 5.3 Zheng, L et al. (2008) Human DNA2 is a mitochondrial nuclease/helicase for efficient processing of DNA replication and repair intermediates. Mol. Cell 32 325-36 PubMed GONUTS page
- ↑ Shen, B et al. (1996) Essential amino acids for substrate binding and catalysis of human flap endonuclease 1. J. Biol. Chem. 271 9173-6 PubMed GONUTS page
- ↑ 7.0 7.1 Qiu, J et al. (2002) Arginine residues 47 and 70 of human flap endonuclease-1 are involved in DNA substrate interactions and cleavage site determination. J. Biol. Chem. 277 24659-66 PubMed GONUTS page
- ↑ 8.0 8.1 8.2 Robins, P et al. (1994) Structural and functional homology between mammalian DNase IV and the 5'-nuclease domain of Escherichia coli DNA polymerase I. J. Biol. Chem. 269 28535-8 PubMed GONUTS page
- ↑ Benrezkallah, D et al. (2015) Molecular dynamics of the salt dependence of a cold-adapted enzyme: endonuclease I. J. Biomol. Struct. Dyn. 33 2511-21 PubMed GONUTS page
- ↑ 10.0 10.1 10.2 10.3 10.4 10.5 10.6 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
- ↑ Szczesny, B et al. (2014) Opposing roles of mitochondrial and nuclear PARP1 in the regulation of mitochondrial and nuclear DNA integrity: implications for the regulation of mitochondrial function. Nucleic Acids Res. 42 13161-73 PubMed GONUTS page
- ↑ 12.0 12.1 12.2 Murray, JM et al. (1994) Structural and functional conservation of the human homolog of the Schizosaccharomyces pombe rad2 gene, which is required for chromosome segregation and recovery from DNA damage. Mol. Cell. Biol. 14 4878-88 PubMed GONUTS page
- ↑ 13.0 13.1 13.2 13.3 Harrington, JJ & Lieber, MR (1994) The characterization of a mammalian DNA structure-specific endonuclease. EMBO J. 13 1235-46 PubMed GONUTS page
- ↑ 14.0 14.1 Hosfield, DJ et al. (1998) Structure of the DNA repair and replication endonuclease and exonuclease FEN-1: coupling DNA and PCNA binding to FEN-1 activity. Cell 95 135-46 PubMed GONUTS page
d
- GO:0003684 ! damaged DNA binding
- GO:0003677 ! DNA binding
- GO:0006974 ! DNA damage response
- GO:0006281 ! DNA repair
- GO:0006260 ! DNA replication
- GO:0043137 ! DNA replication, removal of RNA primer
- GO:0006302 ! double-strand break repair
- GO:0003690 ! double-stranded DNA binding
- GO:0008309 ! double-stranded DNA exodeoxyribonuclease activity
- GO:0000724 ! double-strand break repair via homologous recombination
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