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Category:Team Simba's Pride

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SUPER BOWL ROUND Spring 2012

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
requireschangesXANCP:Q9LCF2Smedleya, Team Simba's Pride2012-04-15 14:51:11 CDTGO:0009405 pathogenesis (P)PMID:19423625ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3 shows that XrvA contributes to the pathogenesis but is not completely dependent on it. Figure 5 also shows that XrvA has an influence on the expression levels of other known virulence genes.

challenge
requireschanges9XANT:Q0VHD4Smedleya, Team Simba's Pride2012-04-15 14:18:14 CDTGO:0072657 protein localization in membrane (P)PMID:21478322ECO:0000314 direct assay evidence used in manual assertion

Figure 5 shows that the Hpa2 protein is localized at the host cell membrane.

challenge
requireschanges9XANT:Q0VHC0Smedleya, Team Simba's Pride2012-04-15 14:17:18 CDTGO:0009405 pathogenesis (P)PMID:21478322ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 1 shows that HrpF1 contributes to pathogenesis of rice plants because it can compliment the double mutant of HrpF1 and Hpa2 (which is also shown to contribute to lesion formation).

challenge
requireschanges9XANT:Q0VHC0Smedleya, Team Simba's Pride2012-04-15 14:17:18 CDTGO:0072657 protein localization in membrane (P)PMID:21478322ECO:0000314 direct assay evidence used in manual assertion

Figure 5 shows that when HrpF1 is able to bind with Hpa2 in plant cells, it is localized in the plant cell membrane.

challenge
requireschanges9XANT:Q0VHD4Smedleya, Team Simba's Pride2012-04-15 14:05:17 CDTGO:0009405 pathogenesis (P)PMID:21478322ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 1 shows that Hpa2 contributes to pathogenesis of rice plants because it can compliment the double mutant of Hpa2 and HrpF (which is also shown to contribute to lesion formation).

challenge
unacceptableXANC5:Q3BYK0Smedleya, Team Simba's Pride2012-04-15 10:20:24 CDTGO:0006200 ATP catabolic process (P)PMID:19114489ECO:0000314 direct assay evidence used in manual assertion

Figure 2 shows that the ATP hydrolysis activity of the protein in vitro.

challenge
requireschangesXANC5:Q3BYK0Smedleya, Team Simba's Pride2012-04-15 10:20:24 CDTGO:0009405 pathogenesis (P)PMID:19114489ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2 shows that when mutated, the host has significantly reduced symptom formation.

challenge
requireschangesXANC5:Q3BYL5Smedleya, Team Simba's Pride2012-04-14 16:30:06 CDTGO:0009297 pilus assembly (P)PMID:15774889ECO:0000314 direct assay evidence used in manual assertion

Figure 5 shows an immunoblot using antibodies against HrpE to show that the pilus is primarily composed of HrpE.

challenge
acceptableRALSO:HRPBSmedleya, Team Simba's Pride2012-04-14 14:21:40 CDTGO:0030260 entry into host cell (P)PMID:10707351ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4 shows that a mutant hrpB cell has reduced entry into a host cell than compared to wild type.

challenge
requireschangesXANC5:Q3BYK8Smedleya, Team Simba's Pride2012-04-14 12:51:34 CDTGO:0009306 protein secretion (P)PMID:21576326ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 2 shows systematic mutations in the protein sequence that affect virulence via interactions (or lack thereof) with HrcU, a known type III secretion protein

challenge
requireschangesXANC5:Q3BYK6Smedleya, Team Simba's Pride2012-04-14 12:50:11 CDTGO:0009306 protein secretion (P)PMID:21219463ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3 shows that HrcU does not prevent the expression of secreted proteins, but rather prevents the secretion of these proteins when mutated.

challenge
updatedbyinstructorKOMXY:D2KKE6Smedleya, Team Simba's Pride2012-04-10 11:58:59 CDTGO:0006044 N-acetylglucosamine metabolic process (P)PMID:21655093ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 4 shows that when the gene is interrupted, the culture cannot grow on N-acetylglucosamine, showing an interruption in the metabolic pathway.

challenge


MSU Internal Competition

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
acceptablePSEPU:B5M4W4Smedleya, Team Simba's Pride2012-04-01 14:50:28 CDTGO:0042621 poly(3-hydroxyalkanoate) biosynthetic process (P)PMID:16085828ECO:0000315 mutant phenotype evidence used in manual assertion

Figure 3 shows that when phaG is inturrupted, polyhydroxyalkanoate synthesis is inhibited.

challenge
requireschangesMETEA:C5AZN7Smedleya, Team Simba's Pride2012-04-01 14:20:19 CDTGO:0003988 acetyl-CoA C-acyltransferase activity (F)PMID:11208803ECO:0000270 expression pattern evidence used in manual assertion

Table 2 shows the beta-ketothiolase activity of the AM1 strain. It also shows the same activity of a phaB mutant and the no activity for a phaA mutant.

challenge
acceptableAZOBR:Q8KXD5Smedleya, Team Simba's Pride2012-03-27 11:57:23 CDTGO:0042619 poly-hydroxybutyrate biosynthetic process (P)PMID:12039753ECO:0000315 mutant phenotype evidence used in manual assertion

As shown in Figure 6, when grown in excess carbon the normal strain produced polyhydroxybutyrate granules but the mutant did not under the same conditions.

challenge

Pages in category "Team Simba's Pride"

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