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Category:Team Militant Sharks

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SUPER BOWL ROUND Spring 2012

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
acceptableECOLI:SDHDSiegersm, Team Militant Sharks2012-04-15 08:06:19 CDTGO:0008721 D-serine ammonia-lyase activity (F)PMID:5327100ECO:0000314 direct assay evidence used in manual assertion

D-serine ammonia-lyase (DsdA) catalyzes the deamination of D-serine to form pyruvate and ammonia.This is shown in Figure 7 and 8 because it shows the formation of pyruvate from the deamination of D-serine.

challenge
requireschangesORYSJ:NCASESiegersm, Team Militant Sharks2012-04-15 03:24:10 CDTGO:0017040 ceramidase activity (F)PMID:18547394ECO:0000270 expression pattern evidence used in manual assertion

In figure 4, it was observed that endogenous levels of phytoceramide with fatty acid chain lengths of C26 and C28 were elevated in Δypc1Δydc1 when expression of OsCDase was induced by growth in galactose. This suggests that OsCDase (ceramidase) may exhibit reverse ceramidase activity and catalyze the formation of phytoceramide with very long chain fatty acids

challenge
requireschangesECOLI:ASNBSiegersm, Team Militant Sharks2012-04-15 03:04:43 CDTGO:0004066 asparagine synthase (glutamine-hydrolyzing) activity (F)PMID:4895361ECO:0000270 expression pattern evidence used in manual assertion

Tables VI and VII show that when the gene was activated, it produced asparagine, and when it was inhibited, it stopped the production of Asparagine. Therefore, they concluded that Asparagine synthase was resonsible for the production of Asparagine.

challenge
requireschangesPSEA8:B7V368Siegersm, Team Militant Sharks2012-04-15 02:24:21 CDTGO:0047435 5-guanidino-2-oxopentanoate decarboxylase activity (The gene encodes a 2-ketoarginine decarboxylase. Even though the protein has not been purified yet, the phenotype of a knockout mutant in this gene supports the proposed activity. (Figure 3))PMID:17416670IMP: Inferred from Mutant Phenotype
challenge
requireschangesARATH:ABAH2Siegersm, Team Militant Sharks2012-04-15 01:24:37 CDTGO:0010295 (+)-abscisic acid 8'-hydroxylase activity (F)PMID:15064374ECO:0000270 expression pattern evidence used in manual assertion

They demonstrated that the transcript levels of all four CYP707A (abscisic acid 8'-hydroxylase) genes increased in response to ABA (Figs. 3 and ​and 9A) and under various stress conditions (Fig. 9). In other words, ABA activates its own inactivation to PA via transcriptional activation of CYP707A gene expression.

challenge
acceptableSTRCL:Q83Z62Howar123, Team Militant Sharks2012-04-13 17:31:34 CDTGO:0033050 clavulanic acid biosynthetic process (P)PMID:14693539ECO:0000315 mutant phenotype evidence used in manual assertion

Table 4 shows that when the orf12 gene is not present the cells can not produce clavulanic acid.

challenge
acceptableSTRCL:Q8KRB5Howar123, Team Militant Sharks2012-04-13 17:29:34 CDTGO:0033050 clavulanic acid biosynthetic process (P)PMID:14693539ECO:0000315 mutant phenotype evidence used in manual assertion

Table 4 shows that when the orf14 gene is not present the cells can not produce clavulanic acid

challenge
acceptableSTRCL:Q83Z60Howar123, Team Militant Sharks2012-04-13 17:26:02 CDTGO:0033050 clavulanic acid biosynthetic process (P)PMID:14693539ECO:0000315 mutant phenotype evidence used in manual assertion

Table 4 shows that when the orf17 gene is not present the cells can not produce clavulanic acid.

challenge
acceptableSTRCL:Q83Z61Howar123, Team Militant Sharks2012-04-13 17:24:31 CDTGO:0033050 clavulanic acid biosynthetic process (P)PMID:14693539ECO:0000315 mutant phenotype evidence used in manual assertion

Table 4 shows that when the orf16 gene is not present the cells can not produce clavulanic acid.

challenge
acceptableSTRCL:Q8KRB4Howar123, Team Militant Sharks2012-04-13 17:22:49 CDTGO:0033050 clavulanic acid biosynthetic process (P)PMID:14693539ECO:0000315 mutant phenotype evidence used in manual assertion

Table 4 shows that when the orf15 gene is not present the cells can not produce clavulanic acid.

challenge
requireschangesECOLI:BIOCHowar123, Team Militant Sharks2012-04-12 12:24:53 CDTGO:0019351 dethiobiotin biosynthetic process (P)PMID:20693992ECO:0000314 direct assay evidence used in manual assertion

Figure 2 shows that bioC is necessary for the production of DTB.

challenge


MSU Internal Competition

StatusPageUserDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
requireschangesALOAR:Q3L7F5Howar123, Team Militant Sharks2012-03-29 13:00:39 CDTGO:0030639 polyketide biosynthetic process (P)PMID:16144421ECO:0000314 direct assay evidence used in manual assertion

Figure 1D and Figure 5A shows that OKS uses 8 malonyl- CoA as a sole substrate to yield a 1:4 mixture of octaketides SEK4 and SEK4b.

challenge

Pages in category "Team Militant Sharks"

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