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CACAO
the intercollegiate annotation competition!
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| The Community Assessment of Community Annotation with Ontologies (CACAO) is a competition for teams of undergrads around the world to improve the functional annotation of genes. CACAO was developed and is currently run at Texas A&M University, along with many other institutions.
If you are interested in participating, please email us - ecoliwiki@gmail.com.
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Calendar of Rounds
| Inning |
Activity |
Start |
End |
Notes
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0
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instruction
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- Introduction
- Course Organization and Learning Objectives
- Web Resources/Google Docs
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0
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instruction
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- Training/Discuss Paper
- GONUTS accounts with teams
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1
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open
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- Training
- Team Paper discussion 1
- CACAO Annotation Round 1
- REQUIREMENT: One correct annotation per team
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1
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open
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- Open Week
- Team presentation soverview
- Assign 461 Presentation 1
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2
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annotation
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- CACAO Annotation round 2
- Team Presentation assigned
- 461 Presentation
- GOAL: 5 individual annotations submitted by the end of the round
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2
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challenge
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- Challenges
- Team Presentations
- GOAL: 2 challenges submitted by end of the round
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3
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annotation
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- Work on annotations
- 'Requirement': 40 annotation points accepted by end of the round.
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3
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challenge
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- Challenges
- Literature Training
- Assign Team Paper Homework
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4
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open
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SPRING BREAK
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4
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open
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5
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annotation
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- GOAL: 60 annotation points accepted by end of round.
- Team Presentation overview
- Assign 461 presentation 2
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5
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challenge
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- Team presentation assigned
- 461 Presentation #2
- challenges!
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6
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annotation
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- Team presentations
- GOAL: 70 annotations points accepted by end of the round.
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6
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open
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- LAST WEEK TO SUBMIT ANNOTATIONS AND CHALLENGES
- Requirement: 80 accepted annotation points by the end of the round.
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instruction
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- Chocoloate Day
- Class Recap
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CACAO Spring 2020
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- Don't forget - no binding terms (i.e. DNA binding, etc) & no response to terms (i.e. response to heat, etc)
Quick Links
Decision Tree: Experimental Codes (IMP, IDA, IGI, ISS)
Decision Tree: Sequence/Structure Codes (ISS, ISA, ISO, ISM)
Adding an Annotation Walkthrough
ECs for Common Experiments
- → Look through the helpful handouts for students shown above. This includes printable documents.
- For more help on evidence codes
Participating schools
Lecture Material
More background info can be found on the About CACAO page.
Virus-related GO terms
- For those of you interested in annotating proteins from viruses and phages:
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Subcategories
This category has the following 4 subcategories, out of 4 total.
