ARATH:WRK40

Species (Taxon ID)	Arabidopsis thaliana (Mouse-ear cress). (3702)
Gene Name(s)	WRKY40
Protein Name(s)	Probable WRKY transcription factor 40 WRKY DNA-binding protein 40
External Links
UniProt	Q9SAH7
EMBL	AF480149 AC011713 CP002684 BT001914
PIR	A96841
RefSeq	NP_178199.1
UniGene	At.28188
ProteinModelPortal	Q9SAH7
SMR	Q9SAH7
BioGrid	29641
IntAct	Q9SAH7
STRING	3702.AT1G80840.1-P
PaxDb	Q9SAH7
PRIDE	Q9SAH7
EnsemblPlants	AT1G80840.1
GeneID	844423
KEGG	ath:AT1G80840
TAIR	AT1G80840
eggNOG	NOG310042
HOGENOM	HOG000052516
InParanoid	Q9SAH7
OMA	NDMMSAA
PhylomeDB	Q9SAH7
Proteomes	UP000006548
ExpressionAtlas	Q9SAH7
Genevestigator	Q9SAH7
GO	GO:0005634 GO:0043565 GO:0003700 GO:0042742 GO:0050832 GO:0031347 GO:0050691 GO:0010200 GO:0002237 GO:0009751 GO:0009611 GO:0006351
Gene3D	2.20.25.80
InterPro	IPR003657
Pfam	PF03106
SMART	SM00774
SUPFAM	SSF118290
PROSITE	PS50811

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
enables	GO:0044212	transcription regulatory region DNA binding	PMID:23509177^[1]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
involved_in	GO:0045892	negative regulation of transcription, DNA-templated	PMID:23509177^[1]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0050832	defense response to fungus	PMID:16603654^[2]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0042742	defense response to bacterium	PMID:12602888^[3]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0031347	regulation of defense response	PMID:12068113^[4]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0010200	response to chitin	PMID:17722694^[5]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0009751	response to salicylic acid	PMID:12602888^[3]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0009611	response to wounding	PMID:17953483^[6]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:16603654^[2]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
enables	GO:0003700	DNA-binding transcription factor activity	PMID:16603654^[2]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
enables	GO:0003700	DNA-binding transcription factor activity	PMID:11118137^[7]	ECO:0000250	sequence similarity evidence used in manual assertion		F	Seeded From UniProt	Missing: with/from
enables	GO:0003700	DNA-binding transcription factor activity	PMID:10785665^[8]	ECO:0000250	sequence similarity evidence used in manual assertion		F	Seeded From UniProt	Missing: with/from
involved_in	GO:0002237	response to molecule of bacterial origin	PMID:22188129^[9]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
enables	GO:0003700	DNA-binding transcription factor activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR003657 InterPro:IPR036576	F	Seeded From UniProt	complete
involved_in	GO:0006355	regulation of transcription, DNA-templated	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR003657 InterPro:IPR036576	P	Seeded From UniProt	complete
enables	GO:0043565	sequence-specific DNA binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR003657 InterPro:IPR036576	F	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0539 UniProtKB-SubCell:SL-0191	C	Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0238	F	Seeded From UniProt	complete
	GO:0045892	negative regulation of transcription, DNA-templated	PMID:23509177^[1]	ECO:0000315			P	Figure 5.	complete CACAO 8454
	GO:0044212	transcription regulatory region DNA binding	PMID:23509177^[1]	ECO:0000314			F	Figure 2.	complete CACAO 8455
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ ^1.0 ^1.1 ^1.2 ^1.3 Van Aken, O et al. (2013) AtWRKY40 and AtWRKY63 modulate the expression of stress-responsive nuclear genes encoding mitochondrial and chloroplast proteins. Plant Physiol. 162 254-71 PubMed GONUTS page
↑ ^2.0 ^2.1 ^2.2 Xu, X et al. (2006) Physical and functional interactions between pathogen-induced Arabidopsis WRKY18, WRKY40, and WRKY60 transcription factors. Plant Cell 18 1310-26 PubMed GONUTS page
↑ ^3.0 ^3.1 Dong, J et al. (2003) Expression profiles of the Arabidopsis WRKY gene superfamily during plant defense response. Plant Mol. Biol. 51 21-37 PubMed GONUTS page
↑ Chen, C & Chen, Z (2002) Potentiation of developmentally regulated plant defense response by AtWRKY18, a pathogen-induced Arabidopsis transcription factor. Plant Physiol. 129 706-16 PubMed GONUTS page
↑ Libault, M et al. (2007) Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. Mol. Plant Microbe Interact. 20 900-11 PubMed GONUTS page
↑ Walley, JW et al. (2007) Mechanical stress induces biotic and abiotic stress responses via a novel cis-element. PLoS Genet. 3 1800-12 PubMed GONUTS page
↑ Riechmann, JL et al. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290 2105-10 PubMed GONUTS page
↑ Eulgem, T et al. (2000) The WRKY superfamily of plant transcription factors. Trends Plant Sci. 5 199-206 PubMed GONUTS page
↑ Wenke, K et al. (2012) Volatiles of two growth-inhibiting rhizobacteria commonly engage AtWRKY18 function. Plant J. 70 445-59 PubMed GONUTS page

[PMID:23509177-1] 1.0 ^1.1 ^1.2 ^1.3 Van Aken, O et al. (2013) AtWRKY40 and AtWRKY63 modulate the expression of stress-responsive nuclear genes encoding mitochondrial and chloroplast proteins. Plant Physiol. 162 254-71 PubMed GONUTS page

[PMID:16603654-2] 2.0 ^2.1 ^2.2 Xu, X et al. (2006) Physical and functional interactions between pathogen-induced Arabidopsis WRKY18, WRKY40, and WRKY60 transcription factors. Plant Cell 18 1310-26 PubMed GONUTS page

[PMID:12602888-3] 3.0 ^3.1 Dong, J et al. (2003) Expression profiles of the Arabidopsis WRKY gene superfamily during plant defense response. Plant Mol. Biol. 51 21-37 PubMed GONUTS page

[PMID:12068113-4] Chen, C & Chen, Z (2002) Potentiation of developmentally regulated plant defense response by AtWRKY18, a pathogen-induced Arabidopsis transcription factor. Plant Physiol. 129 706-16 PubMed GONUTS page

[PMID:17722694-5] Libault, M et al. (2007) Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. Mol. Plant Microbe Interact. 20 900-11 PubMed GONUTS page

[PMID:17953483-6] Walley, JW et al. (2007) Mechanical stress induces biotic and abiotic stress responses via a novel cis-element. PLoS Genet. 3 1800-12 PubMed GONUTS page

[PMID:11118137-7] Riechmann, JL et al. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290 2105-10 PubMed GONUTS page

[PMID:10785665-8] Eulgem, T et al. (2000) The WRKY superfamily of plant transcription factors. Trends Plant Sci. 5 199-206 PubMed GONUTS page

[PMID:22188129-9] Wenke, K et al. (2012) Volatiles of two growth-inhibiting rhizobacteria commonly engage AtWRKY18 function. Plant J. 70 445-59 PubMed GONUTS page

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ARATH:WRK40

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