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ARATH:RDR6

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Species (Taxon ID) Arabidopsis thaliana (Mouse-ear cress). (3702)
Gene Name(s) RDR6 (synonyms: RDRP6, SDE1, SGS2)
Protein Name(s) RNA-dependent RNA polymerase 6

AtRDRP6 Protein SILENCING DEFECTIVE 1 Protein SUPPRESSOR OF GENE SILENCING 2 RNA-directed RNA polymerase 6

External Links
UniProt Q9SG02
EMBL AF239718
AF268093
AC012329
AL132964
CP002686
RefSeq NP_190519.1
UniGene At.65263
ProteinModelPortal Q9SG02
SMR Q9SG02
IntAct Q9SG02
MINT MINT-7014695
STRING 3702.AT3G49500.1-P
PaxDb Q9SG02
PRIDE Q9SG02
EnsemblPlants AT3G49500.1
GeneID 824112
KEGG ath:AT3G49500
TAIR AT3G49500
eggNOG NOG307726
HOGENOM HOG000239464
InParanoid Q9SG02
KO K11699
OMA FPVFDAC
PhylomeDB Q9SG02
BioCyc ARA:AT3G49500-MONOMER
Proteomes UP000006548
Genevestigator Q9SG02
GO GO:0005634
GO:0003887
GO:0003723
GO:0003968
GO:0048440
GO:0051607
GO:0031047
GO:0048467
GO:0048366
GO:0030422
GO:0010267
GO:0048544
GO:0016246
GO:0001172
GO:0009616
InterPro IPR007855
PANTHER PTHR23079
Pfam PF05183

Annotations

Qualifier GO ID GO term name Reference ECO ID ECO term name with/from Aspect Extension Notes Status

involved_in

GO:0051607

defense response to virus

PMID:16682354[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0048544

recognition of pollen

PMID:19767457[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0048467

gynoecium development

PMID:19767457[2]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0048440

carpel development

PMID:17468259[3]

ECO:0000316

genetic interaction evidence used in manual assertion

TAIR:gene:2177743

P

Seeded From UniProt

complete

involved_in

GO:0048366

leaf development

PMID:16006579[4]

ECO:0000316

genetic interaction evidence used in manual assertion

AGI_LocusCode:AT1G65620

P

Seeded From UniProt

complete

NOT|involved_in

GO:0035196

production of miRNAs involved in gene silencing by miRNA

PMID:16682356[5]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0031047

gene silencing by RNA

PMID:17384170[6]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0016246

RNA interference

PMID:10850496[7]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010267

production of ta-siRNAs involved in RNA interference

PMID:16682354[1]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0010267

production of ta-siRNAs involved in RNA interference

PMID:16131612[8]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0009616

virus induced gene silencing

PMID:17090584[9]

ECO:0000315

mutant phenotype evidence used in manual assertion

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:17384170[6]

ECO:0000314

direct assay evidence used in manual assertion

C

Seeded From UniProt

complete

enables

GO:0003968

RNA-directed 5'-3' RNA polymerase activity

PMID:10850496[7]

ECO:0000250

sequence similarity evidence used in manual assertion

F

Seeded From UniProt

Missing: with/from

involved_in

GO:0070919

production of siRNA involved in chromatin silencing by small RNA

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000554964
PomBase:SPAC6F12.09
TAIR:locus:2136068

P

Seeded From UniProt

complete

part_of

GO:0031380

nuclear RNA-directed RNA polymerase complex

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000554964
PomBase:SPAC6F12.09

C

Seeded From UniProt

complete

involved_in

GO:0030422

production of siRNA involved in RNA interference

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000554964
TAIR:locus:2006822
TAIR:locus:2136068
WB:WBGene00004508
dictyBase:DDB_G0280963

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000554964
PomBase:SPAC6F12.09
TAIR:locus:2114633
TAIR:locus:2136068
WB:WBGene00001214
WB:WBGene00004508

C

Seeded From UniProt

complete

enables

GO:0003968

RNA-directed 5'-3' RNA polymerase activity

PMID:21873635[10]

ECO:0000318

biological aspect of ancestor evidence used in manual assertion

PANTHER:PTN000554964
PomBase:SPAC6F12.09
WB:WBGene00004508

F

Seeded From UniProt

complete

involved_in

GO:0001172

transcription, RNA-templated

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0003968

P

Seeded From UniProt

complete

involved_in

GO:0001172

transcription, RNA-templated

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0003968

P

Seeded From UniProt

complete

involved_in

GO:0001172

transcription, RNA-templated

GO_REF:0000108

ECO:0000364

evidence based on logical inference from manual annotation used in automatic assertion

GO:0003968

P

Seeded From UniProt

complete

involved_in

GO:0001172

transcription, RNA-templated

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0003968

P

Seeded From UniProt

complete

involved_in

GO:0001172

transcription, RNA-templated

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0003968

P

Seeded From UniProt

complete

involved_in

GO:0071897

DNA biosynthetic process

GO_REF:0000108

ECO:0000366

evidence based on logical inference from automatic annotation used in automatic assertion

GO:0003887

P

Seeded From UniProt

complete

involved_in

GO:0016246

RNA interference

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q8LHH9
RAP2018-11-26:Os01t0527600-01

P

Seeded From UniProt

complete

involved_in

GO:0010492

maintenance of shoot apical meristem identity

GO_REF:0000107

ECO:0000265

sequence orthology evidence used in automatic assertion

UniProtKB:Q8LHH9
RAP2018-11-26:Os01t0527600-01

P

Seeded From UniProt

complete

enables

GO:0003676

nucleic acid binding

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR035979

F

Seeded From UniProt

complete

enables

GO:0003968

RNA-directed 5'-3' RNA polymerase activity

GO_REF:0000002

ECO:0000256

match to sequence model evidence used in automatic assertion

InterPro:IPR007855

F

Seeded From UniProt

complete

enables

GO:0003968

RNA-directed 5'-3' RNA polymerase activity

GO_REF:0000003

ECO:0000501

evidence used in automatic assertion

EC:2.7.7.48

F

Seeded From UniProt

complete

involved_in

GO:0030422

production of siRNA involved in RNA interference

PMID:15851028[11]

ECO:0000304

author statement supported by traceable reference used in manual assertion

P

Seeded From UniProt

complete

involved_in

GO:0006952

defense response

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0611

P

Seeded From UniProt

complete

part_of

GO:0005634

nucleus

GO_REF:0000037
GO_REF:0000039

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0539
UniProtKB-SubCell:SL-0191

C

Seeded From UniProt

complete

enables

GO:0003723

RNA binding

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0694

F

Seeded From UniProt

complete

enables

GO:0003968

RNA-directed 5'-3' RNA polymerase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0696

F

Seeded From UniProt

complete

involved_in

GO:0031047

gene silencing by RNA

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0943

P

Seeded From UniProt

complete

enables

GO:0016740

transferase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0808

F

Seeded From UniProt

complete

enables

GO:0003887

DNA-directed DNA polymerase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0239

F

Seeded From UniProt

complete

enables

GO:0016779

nucleotidyltransferase activity

GO_REF:0000037

ECO:0000322

imported manually asserted information used in automatic assertion

UniProtKB-KW:KW-0548

F

Seeded From UniProt

complete

edit table

Notes

References

See Help:References for how to manage references in GONUTS.

  1. ↑ 1.0 1.1 Adenot, X et al. (2006) DRB4-dependent TAS3 trans-acting siRNAs control leaf morphology through AGO7. Curr. Biol. 16 927-32 PubMed GONUTS page
  2. ↑ 2.0 2.1 Tantikanjana, T et al. (2009) A dual role for the S-locus receptor kinase in self-incompatibility and pistil development revealed by an Arabidopsis rdr6 mutation. Plant Cell 21 2642-54 PubMed GONUTS page
  3. ↑ Cui, X et al. (2007) Roles of Arabidopsis cyclin-dependent kinase C complexes in cauliflower mosaic virus infection, plant growth, and development. Plant Cell 19 1388-402 PubMed GONUTS page
  4. ↑ Li, H et al. (2005) The Putative RNA-dependent RNA polymerase RDR6 acts synergistically with ASYMMETRIC LEAVES1 and 2 to repress BREVIPEDICELLUS and MicroRNA165/166 in Arabidopsis leaf development. Plant Cell 17 2157-71 PubMed GONUTS page
  5. ↑ Fahlgren, N et al. (2006) Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis. Curr. Biol. 16 939-44 PubMed GONUTS page
  6. ↑ 6.0 6.1 Luo, Z & Chen, Z (2007) Improperly terminated, unpolyadenylated mRNA of sense transgenes is targeted by RDR6-mediated RNA silencing in Arabidopsis. Plant Cell 19 943-58 PubMed GONUTS page
  7. ↑ 7.0 7.1 Dalmay, T et al. (2000) An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus. Cell 101 543-53 PubMed GONUTS page
  8. ↑ Yoshikawa, M et al. (2005) A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. Genes Dev. 19 2164-75 PubMed GONUTS page
  9. ↑ Blevins, T et al. (2006) Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing. Nucleic Acids Res. 34 6233-46 PubMed GONUTS page
  10. ↑ 10.0 10.1 10.2 10.3 10.4 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
  11. ↑ Allen, E et al. (2005) microRNA-directed phasing during trans-acting siRNA biogenesis in plants. Cell 121 207-21 PubMed GONUTS page
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