ARATH:RBG7

Species (Taxon ID)	Arabidopsis thaliana (Mouse-ear cress). (3702)
Gene Name(s)	RBG7 (synonyms: CCR2, GR-RBP7, GRP7)
Protein Name(s)	Glycine-rich RNA-binding protein 7 AtGR-RBP7 AtRBG7 Glycine-rich protein 7 AtGRP7 Protein COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2 Protein CCR2
External Links
UniProt	Q03250
EMBL	Z14987 L00648 L04172 AC007119 CP002685 AF428381 AY054284 AY042826 AY072523 AK318968 AY085214
PIR	S30147
RefSeq	NP_179760.1
UniGene	At.22672 At.23628 At.24279 At.72988
ProteinModelPortal	Q03250
SMR	Q03250
BioGrid	2058
IntAct	Q03250
MINT	MINT-1163877
PaxDb	Q03250
PRIDE	Q03250
ProMEX	Q03250
EnsemblPlants	AT2G21660.1
GeneID	816705
KEGG	ath:AT2G21660
TAIR	AT2G21660
eggNOG	COG0724
HOGENOM	HOG000276232
InParanoid	Q03250
OMA	NVHVARN
Proteomes	UP000006548
ExpressionAtlas	Q03250
Genevestigator	Q03250
GO	GO:0048046 GO:0009507 GO:0005737 GO:0005829 GO:0005634 GO:0005777 GO:0009506 GO:0003690 GO:0003729 GO:0000166 GO:0003723 GO:0003697 GO:0000380 GO:0007623 GO:0032508 GO:0045087 GO:0006406 GO:0010119 GO:0046686 GO:0009409 GO:0009735 GO:0006970 GO:0009651 GO:0009414 GO:0010043 GO:0010501 GO:0010228
Gene3D	3.30.70.330
InterPro	IPR012677 IPR000504
Pfam	PF00076
SMART	SM00360
PROSITE	PS50102

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
involved_in	GO:0009651	response to salt stress	PMID:16207746^[1]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0009414	response to water deprivation	PMID:16207746^[1]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0009409	response to cold	PMID:16207746^[1]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	PMID:14756317^[2]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:14756317^[2]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
enables	GO:0003723	RNA binding	PMID:16207746^[1]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
part_of	GO:0048046	apoplast	PMID:21798377^[3]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
involved_in	GO:0046686	response to cadmium ion	PMID:16502469^[4]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0045087	innate immune response	PMID:18573194^[5]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0045087	innate immune response	PMID:17450127^[6]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0045087	innate immune response	PMID:17450127^[6]	ECO:0000314	direct assay evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0032508	DNA duplex unwinding	PMID:17169986^[7]	ECO:0000314	direct assay evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0010501	RNA secondary structure unwinding	PMID:17169986^[7]	ECO:0000314	direct assay evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0010228	vegetative to reproductive phase transition of meristem	PMID:18573194^[5]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0010119	regulation of stomatal movement	PMID:18410480^[8]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0010043	response to zinc ion	PMID:19880396^[9]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0009735	response to cytokinin	PMID:24064926^[10]	ECO:0000314	direct assay evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0009651	response to salt stress	PMID:17916636^[11]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
part_of	GO:0009507	chloroplast	PMID:18431481^[12]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
part_of	GO:0009506	plasmodesma	PMID:21533090^[13]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
involved_in	GO:0007623	circadian rhythm	PMID:9238008^[14]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0006970	response to osmotic stress	PMID:18410480^[8]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0006406	mRNA export from nucleus	PMID:18410480^[8]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
part_of	GO:0005829	cytosol	PMID:21166475^[15]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
part_of	GO:0005777	peroxisome	PMID:17951448^[16]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	PMID:18410480^[8]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:18410480^[8]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:9238008^[14]	ECO:0000250	sequence similarity evidence used in manual assertion		C	Seeded From UniProt	Missing: with/from
enables	GO:0003729	mRNA binding	PMID:27729395^[17]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
enables	GO:0003729	mRNA binding	PMID:23042250^[18]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
enables	GO:0003723	RNA binding	PMID:17169986^[7]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
enables	GO:0003723	RNA binding	PMID:8448367^[19]	ECO:0000250	sequence similarity evidence used in manual assertion		F	Seeded From UniProt	Missing: with/from
enables	GO:0003697	single-stranded DNA binding	PMID:16207746^[1]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
enables	GO:0003690	double-stranded DNA binding	PMID:16207746^[1]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
involved_in	GO:0000380	alternative mRNA splicing, via spliceosome	PMID:23042250^[18]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
part_of	GO:1990904	ribonucleoprotein complex	PMID:21873635^[20]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	FB:FBgn0001215 FB:FBgn0004237 FB:FBgn0004838 MGI:MGI:1916394 PANTHER:PTN002689974 UniProtKB:P09651 UniProtKB:P19338 UniProtKB:P22626 UniProtKB:Q14103 UniProtKB:Q96EP5 UniProtKB:Q99729	C	Seeded From UniProt	complete
enables	GO:0003723	RNA binding	PMID:21873635^[20]	ECO:0000318	biological aspect of ancestor evidence used in manual assertion	MGI:MGI:104819 MGI:MGI:1330294 MGI:MGI:893588 MGI:MGI:97286 PANTHER:PTN002689974 RGD:1306751 RGD:1310403 RGD:1310906 RGD:3153 RGD:69234 SGD:S000003391 SGD:S000005483 TAIR:locus:2019622 TAIR:locus:2076096 TAIR:locus:2079874 TAIR:locus:2083810 TAIR:locus:2122009 TAIR:locus:2159401 TAIR:locus:2179939 UniProtKB:P19338 UniProtKB:P22626 UniProtKB:P38159 UniProtKB:P62995 UniProtKB:Q03250 UniProtKB:Q13148 UniProtKB:Q14103 UniProtKB:Q9SVM8	F	Seeded From UniProt	complete
enables	GO:0003676	nucleic acid binding	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR000504 InterPro:IPR035979	F	Seeded From UniProt	complete
enables	GO:0003723	RNA binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0694	F	Seeded From UniProt	complete
involved_in	GO:0045087	innate immune response	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0399	P	Seeded From UniProt	complete
involved_in	GO:0006397	mRNA processing	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0507	P	Seeded From UniProt	complete
involved_in	GO:0008380	RNA splicing	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0508	P	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0539 UniProtKB-SubCell:SL-0191	C	Seeded From UniProt	complete
involved_in	GO:0006952	defense response	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0611	P	Seeded From UniProt	complete
part_of	GO:0005737	cytoplasm	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0963 UniProtKB-SubCell:SL-0086	C	Seeded From UniProt	complete
involved_in	GO:0002376	immune system process	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0391	P	Seeded From UniProt	complete
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 Kwak, KJ et al. (2005) Characterization of transgenic Arabidopsis plants overexpressing GR-RBP4 under high salinity, dehydration, or cold stress. J. Exp. Bot. 56 3007-16 PubMed GONUTS page
↑ ^2.0 ^2.1 Ziemienowicz, A et al. (2003) Arabidopsis transportin1 is the nuclear import receptor for the circadian clock-regulated RNA-binding protein AtGRP7. Plant Mol. Biol. 53 201-12 PubMed GONUTS page
↑ Ge, W et al. (2011) Proteomic analyses of apoplastic proteins from germinating Arabidopsis thaliana pollen. Biochim. Biophys. Acta 1814 1964-73 PubMed GONUTS page
↑ Sarry, JE et al. (2006) The early responses of Arabidopsis thaliana cells to cadmium exposure explored by protein and metabolite profiling analyses. Proteomics 6 2180-98 PubMed GONUTS page
↑ ^5.0 ^5.1 Streitner, C et al. (2008) The small glycine-rich RNA binding protein AtGRP7 promotes floral transition in Arabidopsis thaliana. Plant J. 56 239-50 PubMed GONUTS page
↑ ^6.0 ^6.1 Fu, ZQ et al. (2007) A type III effector ADP-ribosylates RNA-binding proteins and quells plant immunity. Nature 447 284-8 PubMed GONUTS page
↑ ^7.0 ^7.1 ^7.2 Kim, JS et al. (2007) Cold shock domain proteins and glycine-rich RNA-binding proteins from Arabidopsis thaliana can promote the cold adaptation process in Escherichia coli. Nucleic Acids Res. 35 506-16 PubMed GONUTS page
↑ ^8.0 ^8.1 ^8.2 ^8.3 ^8.4 Kim, JS et al. (2008) Glycine-rich RNA-binding protein 7 affects abiotic stress responses by regulating stomata opening and closing in Arabidopsis thaliana. Plant J. 55 455-66 PubMed GONUTS page
↑ Fukao, Y et al. (2009) Identification of zinc-responsive proteins in the roots of Arabidopsis thaliana using a highly improved method of two-dimensional electrophoresis. Plant Cell Physiol. 50 2234-9 PubMed GONUTS page
↑ Černý, M et al. (2013) Proteome and metabolome profiling of cytokinin action in Arabidopsis identifying both distinct and similar responses to cytokinin down- and up-regulation. J. Exp. Bot. 64 4193-206 PubMed GONUTS page
↑ Jiang, Y et al. (2007) Comparative proteomic analysis of NaCl stress-responsive proteins in Arabidopsis roots. J. Exp. Bot. 58 3591-607 PubMed GONUTS page
↑ Zybailov, B et al. (2008) Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. PLoS ONE 3 e1994 PubMed GONUTS page
↑ Fernandez-Calvino, L et al. (2011) Arabidopsis plasmodesmal proteome. PLoS ONE 6 e18880 PubMed GONUTS page
↑ ^14.0 ^14.1 Heintzen, C et al. (1997) AtGRP7, a nuclear RNA-binding protein as a component of a circadian-regulated negative feedback loop in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 94 8515-20 PubMed GONUTS page
↑ Ito, J et al. (2011) Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. J. Proteome Res. 10 1571-82 PubMed GONUTS page
↑ Reumann, S et al. (2007) Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. Plant Cell 19 3170-93 PubMed GONUTS page
↑ Reichel, M et al. (2016) In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Plant Cell 28 2435-2452 PubMed GONUTS page
↑ ^18.0 ^18.1 Streitner, C et al. (2012) An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana. Nucleic Acids Res. 40 11240-55 PubMed GONUTS page
↑ van Nocker, S & Vierstra, RD (1993) Two cDNAs from Arabidopsis thaliana encode putative RNA binding proteins containing glycine-rich domains. Plant Mol. Biol. 21 695-9 PubMed GONUTS page
↑ ^20.0 ^20.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

[PMID:16207746-1] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 ^1.5 Kwak, KJ et al. (2005) Characterization of transgenic Arabidopsis plants overexpressing GR-RBP4 under high salinity, dehydration, or cold stress. J. Exp. Bot. 56 3007-16 PubMed GONUTS page

[PMID:14756317-2] 2.0 ^2.1 Ziemienowicz, A et al. (2003) Arabidopsis transportin1 is the nuclear import receptor for the circadian clock-regulated RNA-binding protein AtGRP7. Plant Mol. Biol. 53 201-12 PubMed GONUTS page

[PMID:21798377-3] Ge, W et al. (2011) Proteomic analyses of apoplastic proteins from germinating Arabidopsis thaliana pollen. Biochim. Biophys. Acta 1814 1964-73 PubMed GONUTS page

[PMID:16502469-4] Sarry, JE et al. (2006) The early responses of Arabidopsis thaliana cells to cadmium exposure explored by protein and metabolite profiling analyses. Proteomics 6 2180-98 PubMed GONUTS page

[PMID:18573194-5] 5.0 ^5.1 Streitner, C et al. (2008) The small glycine-rich RNA binding protein AtGRP7 promotes floral transition in Arabidopsis thaliana. Plant J. 56 239-50 PubMed GONUTS page

[PMID:17450127-6] 6.0 ^6.1 Fu, ZQ et al. (2007) A type III effector ADP-ribosylates RNA-binding proteins and quells plant immunity. Nature 447 284-8 PubMed GONUTS page

[PMID:17169986-7] 7.0 ^7.1 ^7.2 Kim, JS et al. (2007) Cold shock domain proteins and glycine-rich RNA-binding proteins from Arabidopsis thaliana can promote the cold adaptation process in Escherichia coli. Nucleic Acids Res. 35 506-16 PubMed GONUTS page

[PMID:18410480-8] 8.0 ^8.1 ^8.2 ^8.3 ^8.4 Kim, JS et al. (2008) Glycine-rich RNA-binding protein 7 affects abiotic stress responses by regulating stomata opening and closing in Arabidopsis thaliana. Plant J. 55 455-66 PubMed GONUTS page

[PMID:19880396-9] Fukao, Y et al. (2009) Identification of zinc-responsive proteins in the roots of Arabidopsis thaliana using a highly improved method of two-dimensional electrophoresis. Plant Cell Physiol. 50 2234-9 PubMed GONUTS page

[PMID:24064926-10] Černý, M et al. (2013) Proteome and metabolome profiling of cytokinin action in Arabidopsis identifying both distinct and similar responses to cytokinin down- and up-regulation. J. Exp. Bot. 64 4193-206 PubMed GONUTS page

[PMID:17916636-11] Jiang, Y et al. (2007) Comparative proteomic analysis of NaCl stress-responsive proteins in Arabidopsis roots. J. Exp. Bot. 58 3591-607 PubMed GONUTS page

[PMID:18431481-12] Zybailov, B et al. (2008) Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. PLoS ONE 3 e1994 PubMed GONUTS page

[PMID:21533090-13] Fernandez-Calvino, L et al. (2011) Arabidopsis plasmodesmal proteome. PLoS ONE 6 e18880 PubMed GONUTS page

[PMID:9238008-14] 14.0 ^14.1 Heintzen, C et al. (1997) AtGRP7, a nuclear RNA-binding protein as a component of a circadian-regulated negative feedback loop in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U.S.A. 94 8515-20 PubMed GONUTS page

[PMID:21166475-15] Ito, J et al. (2011) Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. J. Proteome Res. 10 1571-82 PubMed GONUTS page

[PMID:17951448-16] Reumann, S et al. (2007) Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. Plant Cell 19 3170-93 PubMed GONUTS page

[PMID:27729395-17] Reichel, M et al. (2016) In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Plant Cell 28 2435-2452 PubMed GONUTS page

[PMID:23042250-18] 18.0 ^18.1 Streitner, C et al. (2012) An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana. Nucleic Acids Res. 40 11240-55 PubMed GONUTS page

[PMID:8448367-19] van Nocker, S & Vierstra, RD (1993) Two cDNAs from Arabidopsis thaliana encode putative RNA binding proteins containing glycine-rich domains. Plant Mol. Biol. 21 695-9 PubMed GONUTS page

[PMID:21873635-20] 20.0 ^20.1 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page

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ARATH:RBG7

Contents

Annotations

Notes

References

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