ARATH:RAP1

Species (Taxon ID)	Arabidopsis thaliana (Mouse-ear cress). (3702)
Gene Name(s)	RAP1 (synonyms: BHLH6, EN38, JAI1, JIN1, MYC2, RD22BP1, ZBF1)
Protein Name(s)	Transcription factor MYC2 AtMYC2 Basic helix-loop-helix protein 6 AtbHLH6 bHLH 6 Protein JASMONATE INSENSITIVE 1 R-homologous Arabidopsis protein 1 RAP-1 Transcription factor EN 38 Z-box binding factor 1 protein bHLH transcription factor bHLH006 rd22BP1
External Links
UniProt	Q39204
EMBL	X99548 AB000875 AJ843256 AC017118 CP002684 AY037203 BT003042 AF251691
IPI	IPI00543978
PIR	T52293
RefSeq	NP_174541.1
UniGene	At.22648
ProteinModelPortal	Q39204
SMR	Q39204
DIP	DIP-40533N
IntAct	Q39204
PaxDb	Q39204
PRIDE	Q39204
EnsemblPlants	AT1G32640.1
GeneID	840158
KEGG	ath:AT1G32640
GeneFarm	1895
TAIR	AT1G32640
eggNOG	NOG295658
HOGENOM	HOG000238207
InParanoid	Q39204
KO	K13422
OMA	KRNHPAA
PhylomeDB	Q39204
ProtClustDB	CLSN2682813
Genevestigator	Q39204
GO	GO:0005634 GO:0003677 GO:0003700 GO:0009738 GO:0009963 GO:0045893 GO:2000068 GO:0051090 GO:0043619 GO:0009737 GO:0010200 GO:0009269 GO:0009753 GO:0009611 GO:0006351
Gene3D	4.10.280.10
InterPro	IPR011598 IPR025610
Pfam	PF14215 PF00010
SMART	SM00353
SUPFAM	SSF47459
PROSITE	PS50888

Annotations

Qualifier	GO ID	GO term name	Reference	ECO ID	ECO term name	with/from	Aspect	Notes	Status
part_of	GO:0005634	nucleus	PMID:24890857^[1]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
enables	GO:0019900	kinase binding	PMID:24890857^[1]	ECO:0000353	physical interaction evidence used in manual assertion	UniProtKB:Q38997	F	Seeded From UniProt	complete
involved_in	GO:0051289	protein homotetramerization	PMID:28514654^[2]	ECO:0000314	direct assay evidence used in manual assertion		P	Seeded From UniProt	complete
enables	GO:0003677	DNA binding	PMID:28514654^[2]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
involved_in	GO:2000652	regulation of secondary cell wall biogenesis	PMID:30242037^[3]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:2000068	regulation of defense response to insect	PMID:17616737^[4]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0051090	regulation of DNA-binding transcription factor activity	PMID:17616737^[4]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0045893	positive regulation of transcription, DNA-templated	PMID:9368419^[5]	ECO:0000314	direct assay evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0045893	positive regulation of transcription, DNA-templated	PMID:21321051^[6]	ECO:0000314	direct assay evidence used in manual assertion		P	Seeded From UniProt	complete
enables	GO:0044212	transcription regulatory region DNA binding	PMID:30242037^[3]	ECO:0000353	physical interaction evidence used in manual assertion	AGI_LocusCode:AT2G46770	F	Seeded From UniProt	complete
involved_in	GO:0043619	regulation of transcription from RNA polymerase II promoter in response to oxidative stress	PMID:17616737^[4]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
enables	GO:0043565	sequence-specific DNA binding	PMID:25490915^[7]	ECO:0000353	physical interaction evidence used in manual assertion	AGI_LocusCode:AT2G24210	F	Seeded From UniProt	complete
enables	GO:0043565	sequence-specific DNA binding	PMID:25352272^[8]	ECO:0000353	physical interaction evidence used in manual assertion	AGI_LocusCode:At3g49680	F	Seeded From UniProt	complete
enables	GO:0043565	sequence-specific DNA binding	PMID:25490915^[7]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
involved_in	GO:0010374	stomatal complex development	PMID:29496884^[9]	ECO:0000316	genetic interaction evidence used in manual assertion	AGI_LocusCode:At4g17880 AGI_LocusCode:At5g46760	P	Seeded From UniProt	complete
involved_in	GO:0010200	response to chitin	PMID:17722694^[10]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0009963	positive regulation of flavonoid biosynthetic process	PMID:17616737^[4]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0009753	response to jasmonic acid	PMID:21242320^[11]	ECO:0000315	mutant phenotype evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0009737	response to abscisic acid	PMID:9368419^[5]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0009611	response to wounding	PMID:17675405^[12]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
involved_in	GO:0009269	response to desiccation	PMID:9368419^[5]	ECO:0000270	expression pattern evidence used in manual assertion		P	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:25490915^[7]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	PMID:21242320^[11]	ECO:0000314	direct assay evidence used in manual assertion		C	Seeded From UniProt	complete
enables	GO:0003700	DNA-binding transcription factor activity	PMID:12679534^[13]	ECO:0000250	sequence similarity evidence used in manual assertion		F	Seeded From UniProt	Missing: with/from
enables	GO:0003700	DNA-binding transcription factor activity	PMID:11118137^[14]	ECO:0000250	sequence similarity evidence used in manual assertion		F	Seeded From UniProt	Missing: with/from
enables	GO:0003677	DNA binding	PMID:9368419^[5]	ECO:0000314	direct assay evidence used in manual assertion		F	Seeded From UniProt	complete
enables	GO:0046983	protein dimerization activity	GO_REF:0000002	ECO:0000256	match to sequence model evidence used in automatic assertion	InterPro:IPR011598 InterPro:IPR036638	F	Seeded From UniProt	complete
involved_in	GO:0009611	response to wounding	PMID:9680973^[15]	ECO:0000304	author statement supported by traceable reference used in manual assertion		P	Seeded From UniProt	complete
part_of	GO:0005634	nucleus	GO_REF:0000037 GO_REF:0000039	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0539 UniProtKB-SubCell:SL-0191	C	Seeded From UniProt	complete
enables	GO:0003677	DNA binding	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0238	F	Seeded From UniProt	complete
involved_in	GO:0009738	abscisic acid-activated signaling pathway	GO_REF:0000037	ECO:0000322	imported manually asserted information used in automatic assertion	UniProtKB-KW:KW-0938	P	Seeded From UniProt	complete
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Notes

References

See Help:References for how to manage references in GONUTS.

↑ ^1.0 ^1.1 Im, JH et al. (2014) Inverse modulation of the energy sensor Snf1-related protein kinase 1 on hypoxia adaptation and salt stress tolerance in Arabidopsis thaliana. Plant Cell Environ. 37 2303-12 PubMed GONUTS page
↑ ^2.0 ^2.1 Lian, TF et al. (2017) Crystal Structure of Tetrameric Arabidopsis MYC2 Reveals the Mechanism of Enhanced Interaction with DNA. Cell Rep 19 1334-1342 PubMed GONUTS page
↑ ^3.0 ^3.1 Zhang, Q et al. (2018) Blue Light Regulates Secondary Cell Wall Thickening via MYC2/MYC4 Activation of the -Directed Transcriptional Network in Arabidopsis. Plant Cell 30 2512-2528 PubMed GONUTS page
↑ ^4.0 ^4.1 ^4.2 ^4.3 Dombrecht, B et al. (2007) MYC2 differentially modulates diverse jasmonate-dependent functions in Arabidopsis. Plant Cell 19 2225-45 PubMed GONUTS page
↑ ^5.0 ^5.1 ^5.2 ^5.3 Abe, H et al. (1997) Role of arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Plant Cell 9 1859-68 PubMed GONUTS page
↑ Niu, Y et al. (2011) Characterization of JAZ-interacting bHLH transcription factors that regulate jasmonate responses in Arabidopsis. J. Exp. Bot. 62 2143-54 PubMed GONUTS page
↑ ^7.0 ^7.1 ^7.2 Li, R et al. (2014) Virulence factors of geminivirus interact with MYC2 to subvert plant resistance and promote vector performance. Plant Cell 26 4991-5008 PubMed GONUTS page
↑ Li, B et al. (2014) Promoter-based integration in plant defense regulation. Plant Physiol. 166 1803-20 PubMed GONUTS page
↑ Han, X et al. (2018) Jasmonate Negatively Regulates Stomatal Development in Arabidopsis Cotyledons. Plant Physiol. 176 2871-2885 PubMed GONUTS page
↑ Libault, M et al. (2007) Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. Mol. Plant Microbe Interact. 20 900-11 PubMed GONUTS page
↑ ^11.0 ^11.1 Cheng, Z et al. (2011) The bHLH transcription factor MYC3 interacts with the Jasmonate ZIM-domain proteins to mediate jasmonate response in Arabidopsis. Mol Plant 4 279-88 PubMed GONUTS page
↑ Yan, Y et al. (2007) A downstream mediator in the growth repression limb of the jasmonate pathway. Plant Cell 19 2470-83 PubMed GONUTS page
↑ Heim, MA et al. (2003) The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol. Biol. Evol. 20 735-47 PubMed GONUTS page
↑ Riechmann, JL et al. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290 2105-10 PubMed GONUTS page
↑ Rojo, E et al. (1998) Reversible protein phosphorylation regulates jasmonic acid-dependent and -independent wound signal transduction pathways in Arabidopsis thaliana. Plant J. 13 153-65 PubMed GONUTS page

[PMID:24890857-1] 1.0 ^1.1 Im, JH et al. (2014) Inverse modulation of the energy sensor Snf1-related protein kinase 1 on hypoxia adaptation and salt stress tolerance in Arabidopsis thaliana. Plant Cell Environ. 37 2303-12 PubMed GONUTS page

[PMID:28514654-2] 2.0 ^2.1 Lian, TF et al. (2017) Crystal Structure of Tetrameric Arabidopsis MYC2 Reveals the Mechanism of Enhanced Interaction with DNA. Cell Rep 19 1334-1342 PubMed GONUTS page

[PMID:30242037-3] 3.0 ^3.1 Zhang, Q et al. (2018) Blue Light Regulates Secondary Cell Wall Thickening via MYC2/MYC4 Activation of the -Directed Transcriptional Network in Arabidopsis. Plant Cell 30 2512-2528 PubMed GONUTS page

[PMID:17616737-4] 4.0 ^4.1 ^4.2 ^4.3 Dombrecht, B et al. (2007) MYC2 differentially modulates diverse jasmonate-dependent functions in Arabidopsis. Plant Cell 19 2225-45 PubMed GONUTS page

[PMID:9368419-5] 5.0 ^5.1 ^5.2 ^5.3 Abe, H et al. (1997) Role of arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression. Plant Cell 9 1859-68 PubMed GONUTS page

[PMID:21321051-6] Niu, Y et al. (2011) Characterization of JAZ-interacting bHLH transcription factors that regulate jasmonate responses in Arabidopsis. J. Exp. Bot. 62 2143-54 PubMed GONUTS page

[PMID:25490915-7] 7.0 ^7.1 ^7.2 Li, R et al. (2014) Virulence factors of geminivirus interact with MYC2 to subvert plant resistance and promote vector performance. Plant Cell 26 4991-5008 PubMed GONUTS page

[PMID:25352272-8] Li, B et al. (2014) Promoter-based integration in plant defense regulation. Plant Physiol. 166 1803-20 PubMed GONUTS page

[PMID:29496884-9] Han, X et al. (2018) Jasmonate Negatively Regulates Stomatal Development in Arabidopsis Cotyledons. Plant Physiol. 176 2871-2885 PubMed GONUTS page

[PMID:17722694-10] Libault, M et al. (2007) Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. Mol. Plant Microbe Interact. 20 900-11 PubMed GONUTS page

[PMID:21242320-11] 11.0 ^11.1 Cheng, Z et al. (2011) The bHLH transcription factor MYC3 interacts with the Jasmonate ZIM-domain proteins to mediate jasmonate response in Arabidopsis. Mol Plant 4 279-88 PubMed GONUTS page

[PMID:17675405-12] Yan, Y et al. (2007) A downstream mediator in the growth repression limb of the jasmonate pathway. Plant Cell 19 2470-83 PubMed GONUTS page

[PMID:12679534-13] Heim, MA et al. (2003) The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol. Biol. Evol. 20 735-47 PubMed GONUTS page

[PMID:11118137-14] Riechmann, JL et al. (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290 2105-10 PubMed GONUTS page

[PMID:9680973-15] Rojo, E et al. (1998) Reversible protein phosphorylation regulates jasmonic acid-dependent and -independent wound signal transduction pathways in Arabidopsis thaliana. Plant J. 13 153-65 PubMed GONUTS page

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ARATH:RAP1

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