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YEAST:URN1
Contents
| Species (Taxon ID) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). (559292) | |
| Gene Name(s) | URN1 | |
| Protein Name(s) | Pre-mRNA-splicing factor URN1
U2-U5-U6 snRNP, RES complex and NTC-interacting pre-mRNA-splicing factor 1 | |
| External Links | ||
| UniProt | Q06525 | |
| EMBL | U40829 AY692740 BK006949 | |
| PIR | S69038 | |
| RefSeq | NP_015478.1 | |
| PDB | 2JUC | |
| PDBsum | 2JUC | |
| ProteinModelPortal | Q06525 | |
| SMR | Q06525 | |
| BioGrid | 36319 | |
| DIP | DIP-2017N | |
| IntAct | Q06525 | |
| MINT | MINT-401712 | |
| STRING | 4932.YPR152C | |
| MaxQB | Q06525 | |
| PaxDb | Q06525 | |
| EnsemblFungi | [example_ID YPR152C] | |
| GeneID | 856275 | |
| KEGG | sce:YPR152C | |
| CYGD | YPR152c | |
| SGD | S000006356 | |
| eggNOG | NOG305481 | |
| HOGENOM | HOG000141866 | |
| InParanoid | Q06525 | |
| OMA | EPTKYHY | |
| OrthoDB | EOG7CVQ71 | |
| BioCyc | YEAST:G3O-34283-MONOMER | |
| EvolutionaryTrace | Q06525 | |
| NextBio | 981586 | |
| Proteomes | UP000002311 | |
| Genevestigator | Q06525 | |
| GO | GO:0005681 GO:0006397 GO:0008380 | |
| Gene3D | 1.10.10.440 | |
| InterPro | IPR002713 IPR001202 | |
| Pfam | PF01846 PF00397 | |
| SMART | SM00441 SM00456 | |
| SUPFAM | SSF51045 SSF81698 | |
| PROSITE | PS51676 PS01159 PS50020 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
part_of |
GO:0005634 |
nucleus |
ECO:0007005 |
high throughput direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0071010 |
prespliceosome |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0008150 |
biological_process |
ECO:0000307 |
no biological data found used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003674 |
molecular_function |
ECO:0000307 |
no biological data found used in manual assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0071004 |
U2-type prespliceosome |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000221451 |
C |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0005685 |
U1 snRNP |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000221451 |
C |
Seeded From UniProt |
complete | ||
|
enables |
GO:0003723 |
RNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000221451 |
F |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0000398 |
mRNA splicing, via spliceosome |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000221451 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0045292 |
mRNA cis splicing, via spliceosome |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0008380 |
RNA splicing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006397 |
mRNA processing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005681 |
spliceosomal complex |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ Huh, WK et al. (2003) Global analysis of protein localization in budding yeast. Nature 425 686-91 PubMed GONUTS page
- ↑ Fabrizio, P et al. (2009) The evolutionarily conserved core design of the catalytic activation step of the yeast spliceosome. Mol. Cell 36 593-608 PubMed GONUTS page
- ↑ 3.0 3.1 3.2 3.3 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
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