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YEAST:GAR1
Contents
| Species (Taxon ID) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). (559292) | |
| Gene Name(s) | GAR1 | |
| Protein Name(s) | H/ACA ribonucleoprotein complex subunit 1
snoRNP protein GAR1 | |
| External Links | ||
| UniProt | P28007 | |
| EMBL | X63617 U00060 AY558284 BK006934 | |
| PIR | S19634 | |
| RefSeq | NP_011957.1 | |
| PDB | 3U28 3UAI | |
| PDBsum | 3U28 3UAI | |
| ProteinModelPortal | P28007 | |
| SMR | P28007 | |
| BioGrid | 36524 | |
| DIP | DIP-4484N | |
| IntAct | P28007 | |
| MINT | MINT-551032 | |
| STRING | 4932.YHR089C | |
| MaxQB | P28007 | |
| PaxDb | P28007 | |
| PeptideAtlas | P28007 | |
| PRIDE | P28007 | |
| EnsemblFungi | [example_ID YHR089C] | |
| GeneID | 856489 | |
| KEGG | sce:YHR089C | |
| CYGD | YHR089c | |
| SGD | S000001131 | |
| eggNOG | COG3277 | |
| GeneTree | ENSGT00730000111223 | |
| InParanoid | P28007 | |
| KO | K11128 | |
| OMA | NKTAVGK | |
| OrthoDB | EOG7M0P4G | |
| BioCyc | YEAST:G3O-31136-MONOMER | |
| NextBio | 982191 | |
| PRO | PR:P28007 | |
| Proteomes | UP000002311 | |
| Genevestigator | P28007 | |
| GO | GO:0031429 GO:0005730 GO:0005732 GO:0034513 GO:0006364 GO:0031120 | |
| InterPro | IPR021154 IPR007504 IPR009000 | |
| PANTHER | PTHR23237 | |
| Pfam | PF04410 | |
| ProDom | PD020235 | |
| SUPFAM | SSF50447 | |
Annotations
| Qualifier | GO ID | GO term name | Reference | ECO ID | ECO term name | with/from | Aspect | Extension | Notes | Status |
|---|---|---|---|---|---|---|---|---|---|---|
|
involved_in |
GO:0031120 |
snRNA pseudouridine synthesis |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0031429 |
box H/ACA snoRNP complex |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0034513 |
box H/ACA snoRNA binding |
ECO:0000353 |
physical interaction evidence used in manual assertion |
SGD:S000007497 |
F |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0031429 |
box H/ACA snoRNP complex |
ECO:0000353 |
physical interaction evidence used in manual assertion |
SGD:S000007497 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0031120 |
snRNA pseudouridine synthesis |
ECO:0000314 |
direct assay evidence used in manual assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005732 |
small nucleolar ribonucleoprotein complex |
ECO:0000353 |
physical interaction evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005730 |
nucleolus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005730 |
nucleolus |
ECO:0000314 |
direct assay evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0031429 |
box H/ACA snoRNP complex |
ECO:0000353 |
physical interaction evidence used in manual assertion |
C |
Seeded From UniProt |
complete | |||
|
enables |
GO:0034513 |
box H/ACA snoRNA binding |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000579935 |
F |
Seeded From UniProt |
complete | ||
|
part_of |
GO:0031429 |
box H/ACA snoRNP complex |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000579935 |
C |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0000454 |
snoRNA guided rRNA pseudouridine synthesis |
ECO:0000318 |
biological aspect of ancestor evidence used in manual assertion |
PANTHER:PTN000579935 |
P |
Seeded From UniProt |
complete | ||
|
involved_in |
GO:0001522 |
pseudouridine synthesis |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0031429 |
box H/ACA snoRNP complex |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0042254 |
ribosome biogenesis |
ECO:0000256 |
match to sequence model evidence used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0006364 |
rRNA processing |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
enables |
GO:0003723 |
RNA binding |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
F |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005634 |
nucleus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
|
involved_in |
GO:0042254 |
ribosome biogenesis |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
P |
Seeded From UniProt |
complete | |||
|
part_of |
GO:0005730 |
nucleolus |
ECO:0000322 |
imported manually asserted information used in automatic assertion |
C |
Seeded From UniProt |
complete | |||
Notes
References
See Help:References for how to manage references in GONUTS.
- ↑ 1.0 1.1 Wu, G et al. (2011) U2 snRNA is inducibly pseudouridylated at novel sites by Pus7p and snR81 RNP. EMBO J. 30 79-89 PubMed GONUTS page
- ↑ Bagni, C & Lapeyre, B (1998) Gar1p binds to the small nucleolar RNAs snR10 and snR30 in vitro through a nontypical RNA binding element. J. Biol. Chem. 273 10868-73 PubMed GONUTS page
- ↑ Bally, M et al. (1988) SnR30: a new, essential small nuclear RNA from Saccharomyces cerevisiae. Nucleic Acids Res. 16 5291-303 PubMed GONUTS page
- ↑ Ma, X et al. (2005) Pseudouridylation of yeast U2 snRNA is catalyzed by either an RNA-guided or RNA-independent mechanism. EMBO J. 24 2403-13 PubMed GONUTS page
- ↑ 5.0 5.1 Girard, JP et al. (1992) GAR1 is an essential small nucleolar RNP protein required for pre-rRNA processing in yeast. EMBO J. 11 673-82 PubMed GONUTS page
- ↑ 6.0 6.1 Henras, A et al. (1998) Nhp2p and Nop10p are essential for the function of H/ACA snoRNPs. EMBO J. 17 7078-90 PubMed GONUTS page
- ↑ 7.0 7.1 7.2 Gaudet, P et al. (2011) Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief. Bioinformatics 12 449-62 PubMed GONUTS page
