User:Mill2034

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
updatedbyinstructor	ARATH:DSP4	2013-03-28 12:19:44 CDT	GO:0005982 starch metabolic process (P)	PMID:19141707	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 1 shows SEX4 incubated with different amounts of prephosphorylated starch granules caused dephosphorylates the starch granule surface. Activity increased with starch added. Activity decreased when leaf extracts from mutants sex4 when compared to wild type extracts.	challenge
acceptable	ECO57:HHA	2013-04-09 20:56:09 CDT	GO:1900191 negative regulation of single-species biofilm formation (P)	PMID:23377937	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 2 shows when you have a hha mutant, biofilm formation increases but when you complement the mutant with hha+, biofilm formation goes down, as hha is a negative regulator of biofilm production	challenge
updatedbyinstructor	ECOLI:CPXR	2013-04-09 21:30:27 CDT	GO:0045893 positive regulation of transcription, DNA-dependent (P)	PMID:15743952	ECO:0000314 direct assay evidence used in manual assertion	Fig 5.	challenge
updatedbyinstructor	ARATH:AB1D	2013-04-10 16:42:22 CDT	GO:0016042 lipid catabolic process (P)	PMID:12065405	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 3 shows failure of lipid breakdown in germinated cotyledons in cts-1 mutants. Figure 5 shows TAG-derived fatty acids and acyl CoA levels in wild type and cts-1 and cts-2 mutants. There was much less breakdown of fatty acids in the mutants	challenge
acceptable	ARATH:MSI5	2013-04-13 13:53:29 CDT	GO:0010629 negative regulation of gene expression (P)	PMID:22102827	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 2 and 3 both show how the gene negatively regulates the expression of other genes by looking at the expression of those genes in wild type and mutant plants.	challenge
requireschanges	?	2013-04-13 14:02:27 CDT	GO:0010629 negative regulation of gene expression (Figure 8 shows that when a mutant for the gene is made, there is an increase in expression of the gene regulated by HDA6)	PMID:22102827	IMP: Inferred from Mutant Phenotype		challenge
unacceptable	HUMAN:Q6NVY4	2013-04-14 14:27:45 CDT	GO:0000975 regulatory region DNA binding (F)	PMID:23579274	ECO:0000314 direct assay evidence used in manual assertion	Figure 3 shows how the protein binds to DNA at a specific region in the DR5 promoter, through oligo binding and Western blots	challenge
updatedbyinstructor	ARATH:TCP18	2013-04-14 14:45:16 CDT	GO:0010223 secondary shoot formation (P)	PMID:23524661	ECO:0000315 mutant phenotype evidence used in manual assertion	Fig 1 & 3.	challenge

acceptable:2
unacceptable:1
requires_changes:1
flagged:0

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