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User:Fowl1

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Phage Hunters Spring 2017

My Annotations

StatusPageDate/TimeGO Term (Aspect)ReferenceEvidenceNotesLinks
unacceptableBACSU:SKFA2017-04-09 15:07:30 CDTGO:0043934 sporulation (P)PMID:12817086ECO:0000315 mutant phenotype evidence used in manual assertion

In Figure 1C there is a graph that shows the amount of sporulation over time. The wild type that has a normal Skf gene shows a low amount of sporulation compared to the mutant Skf gene that shows a much larger amount of sporulation.

challenge
unacceptableBACSU:GLOX2017-04-23 11:02:03 CDTGO:0043799 sarcosine oxidase activity (F)PMID:9827558ECO:0000250 sequence similarity evidence used in manual assertion

After finding a gene product termed yjbR they noticed that it had a sequence similarity with bacteria sarcosine oxidases. From there they measured yjbR gene products substrate specificity (table 2). They found that there is higher rate of activites with N-methyl-d-alanine, d-proline, d-alanine, and d-2-aminobutyrate.

challenge
unacceptableBACSU:KAD2017-04-23 23:32:03 CDTGO:0009306 protein secretion (P)PMID:12634326ECO:0000315 mutant phenotype evidence used in manual assertion

The protein being tested AmyQ shows a lower concentration in the cell with the prsA3 mutation then compared to the wild type. Figure 2.

challenge

acceptable:0
unacceptable:3
requires_changes:0
flagged:0

Annotations challenged by Fowl1

StatusAuthor,GroupPageGO Term (Aspect)ReferenceEvidenceLinksPage history

0 annotations fixed by Fowl1

What do the icons mean in the status column?

assessment icons.jpg