User:Ckting

My Annotations

Status	Page	Date/Time	GO Term (Aspect)	Reference	Evidence	Notes	Links
acceptable	RHORT:GLND	2013-09-28 14:49:44 CDT	GO:0090293 nitrogen catabolite regulation of transcription (P)	PMID:15687189	ECO:0000315 mutant phenotype evidence used in manual assertion	Table 2 shows that the presence of N-terminal region of GlnD allows glnD mutant R.rubrum to have nitrogenase activity via NifA activation.	challenge
acceptable	RHORT:GLND	2013-09-28 14:55:59 CDT	GO:0018177 protein uridylylation (P)	PMID:15687189	ECO:0000315 mutant phenotype evidence used in manual assertion	Table 3 shows the impact of glnD mutation on the ability of mutant R.rubrum to recover its nitrogenase activity via GlnB and GlnJ uridylylation after returning to light.	challenge
unacceptable	RHORT:GLND	2013-09-28 15:30:19 CDT	GO:0008773 [protein-PII] uridylyltransferase activity (F)	PMID:15687189	ECO:0000315 mutant phenotype evidence used in manual assertion	Fig 5 shows that no GlnJ protein was synthesized in glnD mutant R.rubrum.	challenge
updatedbyinstructor	RHORT:GLND	2013-10-11 11:16:03 CDT	GO:0045893 positive regulation of transcription, DNA-templated (P)	PMID:15687189	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 5 shows that no GlnJ protein was synthesized in glnD mutant R.rubrum	challenge
updatedbyinstructor	ALIFS:LUXY	2013-10-11 12:34:11 CDT	GO:0008218 bioluminescence (P)	PMID:3480518	ECO:0000314 direct assay evidence used in manual assertion	Fig 4 shows the presence of YFP in luciferase-FMN oxidoreductase assay emits light at 484nm and 534nm.	challenge
unacceptable	?	2013-10-11 12:47:52 CDT	GO:0048518 positive regulation of biological process (Fig 4 shows the addition of YFP to luciferase-FMN assay increases the light intensity.)	PMID:3480518	IDA: Inferred from Direct Assay		challenge
updatedbyinstructor	HYPSL:DMOA	2013-10-27 16:01:06 CDT	GO:0018633 dimethyl sulfide monooxygenase activity (F)	PMID:21216999	ECO:0000314 direct assay evidence used in manual assertion	Fig 3	challenge
unacceptable	CAMJE:CH60	2013-11-10 15:45:58 CST	GO:0009408 response to heat (P)	PMID:10206714	ECO:0000314 direct assay evidence used in manual assertion	Fig 6 shows that groESL mRNA expression increased significantly when C.jejuni cells were shifted to 48C.	challenge
unacceptable	CAMJE:CH60	2013-11-10 16:02:33 CST	GO:0019724 B cell mediated immunity (P)	PMID:10206714	ECO:0000314 direct assay evidence used in manual assertion	Fig 7 shows that rCjCpn60-His (GroEL protein) had an immuno-reactivity against anti-HSP60 monoclonal antibody.	challenge
requireschanges	CAMJJ:CDTA	2013-11-10 17:44:25 CST	GO:0071850 mitotic cell cycle arrest (P)	PMID:12933829	ECO:0000315 mutant phenotype evidence used in manual assertion	Figure 3 shows that CdtA subunit is involved in G2 arrest in HeLa cells.	challenge
unacceptable	HYPSL:DMOA	2013-11-10 17:54:19 CST	GO:0018633 dimethyl sulfide monooxygenase activity (F)	PMID:21216999	ECO:0000314 direct assay evidence used in manual assertion	Fig 3 shows that Dimethylsulfide (DMS) is oxidized by DMS monooxygenase.	challenge

acceptable:2
unacceptable:5
requires_changes:1
flagged:0

Annotations challenged by Ckting

Status	Author,Group	Page	GO Term (Aspect)	Reference	Evidence	Links	Page history
requireschanges	Riebefoy, Team 4 peas in a pod	VIBHB:LUXO	GO:0006355 - regulation of DNA-templated transcription (P)	PMID:10027982	ECO:0000315 mutant phenotype evidence used in manual assertion	challenge	C: 2

0 annotations fixed by Ckting

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